Wall clock time and date at job start Tue Mar 31 2020 14:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28468 * 124.88300 * 2 1 4 4 C 1.31795 * 110.11159 * 180.18315 * 3 2 1 5 5 C 1.47708 * 126.51345 * 179.82171 * 4 3 2 6 6 O 1.21576 * 120.00240 * 179.69112 * 5 4 3 7 7 N 1.34779 * 120.00320 * 359.68645 * 5 4 3 8 8 C 1.46490 * 120.00496 * 180.02562 * 7 5 4 9 9 H 1.09005 * 110.68275 * 38.32536 * 8 7 5 10 10 C 1.55475 * 110.61243 * 161.46818 * 8 7 5 11 11 C 1.55845 * 103.33094 * 118.41534 * 10 8 7 12 12 H 1.08998 * 116.12847 * 159.23435 * 11 10 8 13 13 C 1.55387 * 105.04328 * 288.04461 * 11 10 8 14 14 C 1.54857 * 103.48522 * 72.07176 * 13 11 10 15 15 C 1.55841 * 110.62970 * 275.34232 * 8 7 5 16 16 H 1.09002 * 116.13100 * 82.35475 * 15 8 7 17 17 N 1.50232 * 101.05219 * 208.57223 * 15 8 7 18 18 C 1.36938 * 130.83776 * 233.92681 * 17 15 8 19 19 H 1.08002 * 120.00490 * 352.07947 * 18 17 15 20 20 C 1.38812 * 119.99896 * 172.07683 * 18 17 15 21 21 N 1.31622 * 119.99820 * 157.97200 * 20 18 17 22 22 Si 1.86802 * 120.00225 * 338.24860 * 20 18 17 23 23 H 1.48497 * 109.46821 * 94.21965 * 22 20 18 24 24 H 1.48493 * 109.47198 * 214.21852 * 22 20 18 25 25 H 1.48499 * 109.46938 * 334.22229 * 22 20 18 26 26 C 1.41504 * 106.97835 * 359.55896 * 4 3 2 27 27 C 1.35064 * 124.88705 * 179.68908 * 2 1 3 28 28 Cl 1.73599 * 126.40005 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.46730 * 270.30852 * 1 2 3 30 30 H 1.09001 * 109.47293 * 30.31008 * 1 2 3 31 31 H 1.08999 * 109.46666 * 150.31407 * 1 2 3 32 32 H 0.97005 * 119.99053 * 359.97438 * 7 5 4 33 33 H 1.09010 * 110.60939 * 0.02562 * 10 8 7 34 34 H 1.09001 * 110.75959 * 236.90791 * 10 8 7 35 35 H 1.09003 * 110.71778 * 313.51694 * 13 11 10 36 36 H 1.08998 * 110.49784 * 190.52445 * 13 11 10 37 37 H 1.08998 * 110.62421 * 241.37678 * 14 13 11 38 38 H 1.09005 * 110.75795 * 118.42734 * 14 13 11 39 39 H 0.97003 * 119.99972 * 179.97438 * 21 20 18 40 40 H 1.08001 * 127.26218 * 180.26313 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4741 0.7178 -0.0040 5 6 4.6266 1.6417 -0.0090 6 8 5.7595 1.2004 -0.0067 7 7 4.4225 2.9739 -0.0162 8 6 5.5654 3.8901 -0.0218 9 1 6.3660 3.5032 -0.6524 10 6 5.1293 5.3065 -0.4919 11 6 5.4416 6.2065 0.7414 12 1 5.5498 7.2727 0.5425 13 6 4.3653 5.8312 1.7974 14 6 4.7986 4.4213 2.2693 15 6 6.0794 4.1356 1.4288 16 1 6.7494 3.3780 1.8354 17 7 6.6540 5.5178 1.3007 18 6 7.8981 6.0022 1.6056 19 1 8.6078 5.3776 2.1278 20 6 8.2471 7.2959 1.2433 21 7 9.2196 7.9169 1.8765 22 14 7.3314 8.1585 -0.1376 23 1 6.2312 8.9763 0.4332 24 1 8.2694 9.0391 -0.8791 25 1 6.7656 7.1457 -1.0646 26 6 3.5287 -0.6961 0.0037 27 6 2.2376 -1.1079 0.0060 28 17 1.6806 -2.7521 0.0143 29 1 -0.3633 0.0055 1.0276 30 1 -0.3634 0.8872 -0.5186 31 1 -0.3632 -0.8928 -0.5090 32 1 3.5186 3.3259 -0.0185 33 1 4.0633 5.3239 -0.7195 34 1 5.7129 5.6234 -1.3563 35 1 3.3750 5.7966 1.3432 36 1 4.3833 6.5366 2.6282 37 1 4.0231 3.6876 2.0492 38 1 5.0310 4.4249 3.3343 39 1 9.4638 8.8209 1.6232 40 1 4.4128 -1.3164 0.0071 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095731580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:42 Heat of formation + Delta-G solvation = 83.032404 kcal Electronic energy + Delta-G solvation = -25405.567980 eV Core-core repulsion = 21670.391101 eV Total energy + Delta-G solvation = -3735.176879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.83811 -41.61628 -39.79311 -37.98071 -35.56606 -34.65298 -34.30443 -31.73099 -31.50557 -30.94091 -29.97651 -28.28446 -25.98049 -24.43721 -22.89642 -22.66477 -22.05505 -21.21194 -20.38413 -19.37785 -18.78431 -17.81782 -17.59114 -17.46600 -16.82801 -16.53865 -15.57209 -15.47968 -15.28070 -15.19043 -15.11903 -14.82186 -14.20090 -13.84182 -13.81470 -13.51484 -13.43827 -13.14016 -13.09254 -12.86921 -12.79265 -12.56025 -12.48951 -12.24526 -11.95216 -11.89395 -11.46834 -11.27014 -11.20201 -11.01710 -10.87028 -10.37137 -10.12621 -10.05530 -9.18352 -8.12193 -5.33809 0.34766 0.37773 0.76638 1.28800 1.42436 1.48037 1.51940 2.13397 2.27326 2.45705 2.95841 3.11698 3.24363 3.68099 3.83090 3.85041 3.99352 4.12811 4.21341 4.29209 4.31232 4.34061 4.43440 4.47771 4.53793 4.63694 4.63840 4.71165 4.87073 5.01249 5.06765 5.07739 5.19500 5.30580 5.35104 5.39365 5.57255 5.60771 6.12664 6.39492 6.62125 6.70068 7.17502 7.49150 8.21433 9.08413 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.002900 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.438388 B = 9652.505416 C = 9962.768469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.263 5.263 3 N -0.236 5.236 4 C -0.024 4.024 5 C 0.601 3.399 6 O -0.568 6.568 7 N -0.684 5.684 8 C 0.144 3.856 9 H 0.067 0.933 10 C -0.128 4.128 11 C 0.106 3.894 12 H 0.078 0.922 13 C -0.121 4.121 14 C -0.118 4.118 15 C 0.126 3.874 16 H 0.073 0.927 17 N -0.629 5.629 18 C -0.214 4.214 19 H 0.055 0.945 20 C -0.052 4.052 21 N -0.968 5.968 22 Si 0.942 3.058 23 H -0.278 1.278 24 H -0.319 1.319 25 H -0.231 1.231 26 C -0.169 4.169 27 C 0.052 3.948 28 Cl 0.026 6.974 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.417 0.583 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.259 0.741 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.385 -18.963 -6.485 33.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.055 5.055 3 N -0.075 5.075 4 C -0.182 4.182 5 C 0.386 3.614 6 O -0.445 6.445 7 N -0.336 5.336 8 C 0.038 3.962 9 H 0.085 0.915 10 C -0.168 4.168 11 C 0.001 3.999 12 H 0.096 0.904 13 C -0.160 4.160 14 C -0.157 4.157 15 C 0.019 3.981 16 H 0.091 0.909 17 N -0.353 5.353 18 C -0.342 4.342 19 H 0.073 0.927 20 C -0.245 4.245 21 N -0.616 5.616 22 Si 0.772 3.228 23 H -0.206 1.206 24 H -0.248 1.248 25 H -0.154 1.154 26 C -0.198 4.198 27 C -0.099 4.099 28 Cl 0.054 6.946 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.256 0.744 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -27.219 -18.314 -6.435 33.432 hybrid contribution 0.883 0.022 -0.219 0.910 sum -26.336 -18.292 -6.655 32.749 Atomic orbital electron populations 1.22791 0.69691 1.07754 1.06903 1.45919 1.09559 1.00857 1.49155 1.73618 1.02418 1.12697 1.18748 1.21540 0.90871 0.93762 1.12065 1.17062 0.86408 0.82003 0.75881 1.90815 1.24131 1.77740 1.51786 1.45769 1.10391 1.04424 1.73009 1.22284 0.87687 0.88896 0.97379 0.91476 1.23387 1.02771 0.92880 0.97720 1.23321 0.86872 0.95539 0.94139 0.90416 1.22848 0.98391 0.96361 0.98388 1.22821 0.97008 0.97144 0.98712 1.23337 0.93645 0.86298 0.94850 0.90914 1.46896 1.07851 1.05511 1.75027 1.18525 0.89747 0.97044 1.28854 0.92687 1.25467 0.99380 0.97157 1.02466 1.69997 1.35796 1.13181 1.42641 0.85985 0.76652 0.78431 0.81692 1.20624 1.24846 1.15443 1.21597 0.96564 0.93661 1.08002 1.21891 0.90695 0.84890 1.12412 1.98419 1.89288 1.09758 1.97176 0.87259 0.86219 0.86531 0.74438 0.86900 0.91343 0.87829 0.93070 0.89304 0.93346 0.93189 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.14 127.77 1.42 1.70 16 2 N -0.26 -3.79 3.70 -359.15 -1.33 -5.12 16 3 N -0.24 -4.60 11.66 -48.18 -0.56 -5.16 16 4 C -0.02 -0.60 7.13 42.46 0.30 -0.29 16 5 C 0.60 18.13 7.81 86.75 0.68 18.81 16 6 O -0.57 -21.83 16.68 -3.95 -0.07 -21.90 16 7 N -0.68 -18.28 3.61 -436.88 -1.58 -19.86 16 8 C 0.14 4.90 3.08 46.83 0.14 5.05 16 9 H 0.07 2.64 7.75 -2.38 -0.02 2.62 16 10 C -0.13 -4.04 5.99 32.43 0.19 -3.85 16 11 C 0.11 4.13 3.54 46.06 0.16 4.29 16 12 H 0.08 3.27 3.47 -2.39 -0.01 3.26 16 13 C -0.12 -3.78 6.42 32.05 0.21 -3.57 16 14 C -0.12 -3.82 6.33 32.21 0.20 -3.62 16 15 C 0.13 5.07 5.34 46.23 0.25 5.32 16 16 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 17 N -0.63 -30.34 2.85 -616.11 -1.76 -32.10 16 18 C -0.21 -12.73 10.94 84.03 0.92 -11.81 16 19 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 20 C -0.05 -3.15 5.50 84.86 0.47 -2.68 16 21 N -0.97 -63.44 13.97 21.65 0.30 -63.14 16 22 Si 0.94 46.29 24.62 68.60 1.69 47.98 16 23 H -0.28 -12.99 6.82 99.48 0.68 -12.31 16 24 H -0.32 -16.25 7.11 99.48 0.71 -15.54 16 25 H -0.23 -10.08 4.73 99.48 0.47 -9.61 16 26 C -0.17 -3.69 10.80 22.45 0.24 -3.45 16 27 C 0.05 0.85 7.44 83.57 0.62 1.47 16 28 Cl 0.03 0.29 28.67 -2.72 -0.08 0.21 16 29 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.12 0.06 7.71 -2.39 -0.02 0.04 16 32 H 0.42 8.60 7.78 -92.70 -0.72 7.88 16 33 H 0.11 2.50 7.32 -2.38 -0.02 2.48 16 34 H 0.07 2.31 6.59 -2.39 -0.02 2.30 16 35 H 0.10 2.29 7.80 -2.39 -0.02 2.27 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 2.35 6.51 -2.39 -0.02 2.33 16 38 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 40 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -79.08 335.95 2.54 -76.53 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.11 Total: 15.18 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.81 Total: 7.36 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -4.92 Total: -125.38 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.07 Total: -21.90 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.69 Total: 47.98 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal Total: -79.08 2.54 -76.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095731580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.567 kcal (2) G-P(sol) polarization free energy of solvation -79.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds