Wall clock time and date at job start Tue Mar 31 2020 14:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86807 * 119.99899 * 2 1 4 4 H 1.48492 * 109.47184 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47125 * 300.00348 * 3 2 1 6 6 H 1.48506 * 109.46818 * 59.99851 * 3 2 1 7 7 C 1.39890 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00308 * 163.46703 * 7 2 1 9 9 C 1.41366 * 119.99844 * 343.46625 * 7 2 1 10 10 C 1.40805 * 120.57777 * 155.73337 * 9 7 2 11 11 N 1.31505 * 120.68838 * 180.02562 * 10 9 7 12 12 C 1.32160 * 122.06552 * 0.02562 * 11 10 9 13 13 F 1.35103 * 119.45594 * 179.97438 * 12 11 10 14 14 C 1.40038 * 121.08944 * 0.02562 * 12 11 10 15 15 C 1.48492 * 120.41271 * 179.97438 * 14 12 11 16 16 C 1.40837 * 126.21741 * 129.69158 * 15 14 12 17 17 N 1.30686 * 108.09911 * 179.81828 * 16 15 14 18 18 N 1.40010 * 108.52523 * 0.44561 * 17 16 15 19 19 C 1.46503 * 125.89648 * 179.74015 * 18 17 16 20 20 C 1.50702 * 109.46760 * 304.96984 * 19 18 17 21 21 C 1.38650 * 120.78991 * 269.72278 * 20 19 18 22 22 C 1.38199 * 119.16513 * 179.80315 * 21 20 19 23 23 N 1.31873 * 120.76217 * 0.48072 * 22 21 20 24 24 C 1.31873 * 121.72438 * 359.74330 * 23 22 21 25 25 C 1.38201 * 120.76282 * 0.02581 * 24 23 22 26 26 C 1.34857 * 108.20641 * 359.71013 * 18 17 16 27 27 C 1.38930 * 119.17552 * 359.97438 * 14 12 11 28 28 H 0.96995 * 119.99925 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.65106 * 0.29541 * 10 9 7 30 30 H 1.07999 * 125.95373 * 0.02562 * 16 15 14 31 31 H 1.09002 * 109.47181 * 64.96999 * 19 18 17 32 32 H 1.08998 * 109.46810 * 184.96967 * 19 18 17 33 33 H 1.08005 * 120.42025 * 359.97438 * 21 20 19 34 34 H 1.08000 * 119.62661 * 180.20311 * 22 21 20 35 35 H 1.07998 * 119.61354 * 179.97438 * 24 23 22 36 36 H 1.08009 * 120.41697 * 179.97438 * 25 24 23 37 37 H 1.07999 * 126.19304 * 179.97438 * 26 18 17 38 38 H 1.08000 * 120.93587 * 180.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3465 -0.0006 5 1 1.8838 2.3965 -1.2124 6 1 1.8838 2.3965 1.2126 7 6 2.0082 -1.2114 -0.0005 8 1 3.0547 -1.2306 -0.2667 9 6 1.3452 -2.4106 0.3473 10 6 1.8238 -3.6527 -0.1115 11 7 1.2086 -4.7695 0.2103 12 6 0.1263 -4.7808 0.9687 13 9 -0.4641 -5.9590 1.2664 14 6 -0.4193 -3.5917 1.4681 15 6 -1.6362 -3.6219 2.3185 16 6 -1.7965 -2.9856 3.5647 17 7 -3.0023 -3.2413 3.9989 18 7 -3.6506 -4.0525 3.0598 19 6 -5.0172 -4.5690 3.1688 20 6 -5.1683 -5.3202 4.4665 21 6 -4.9082 -6.6804 4.5336 22 6 -5.0536 -7.3351 5.7420 23 7 -5.4436 -6.6829 6.8198 24 6 -5.7039 -5.3904 6.7920 25 6 -5.5761 -4.6687 5.6204 26 6 -2.8001 -4.2758 2.0374 27 6 0.1922 -2.3833 1.1579 28 1 -0.4850 0.8400 -0.0004 29 1 2.7080 -3.6890 -0.7307 30 1 -1.0536 -2.3876 4.0715 31 1 -5.7226 -3.7383 3.1456 32 1 -5.2193 -5.2407 2.3345 33 1 -4.5933 -7.2211 3.6533 34 1 -4.8499 -8.3939 5.8035 35 1 -6.0215 -4.8905 7.6950 36 1 -5.7912 -3.6103 5.6039 37 1 -3.0034 -4.8659 1.1560 38 1 -0.2042 -1.4494 1.5281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239052014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:51 Heat of formation + Delta-G solvation = 96.011459 kcal Electronic energy + Delta-G solvation = -25453.634355 eV Core-core repulsion = 21597.992834 eV Total energy + Delta-G solvation = -3855.641521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.52947 -40.95766 -40.14523 -38.16863 -34.91869 -34.16205 -32.14086 -31.43181 -31.20846 -30.31248 -28.49093 -26.49626 -25.50064 -23.70120 -22.69444 -22.47963 -21.71186 -20.38911 -19.89041 -17.61256 -17.01501 -16.64953 -16.54927 -16.46732 -15.87303 -15.81200 -15.07425 -14.75615 -14.56933 -14.15546 -14.09573 -13.86330 -13.69113 -13.26898 -12.86152 -12.68626 -12.51990 -12.35792 -12.12957 -11.85091 -11.75701 -11.68798 -11.36067 -11.19329 -10.70149 -10.54922 -10.14904 -9.95185 -9.75093 -9.49280 -9.35011 -9.13192 -8.86960 -8.39268 -7.91456 -7.32395 -6.99392 -4.61115 0.87907 0.94155 2.02528 2.36461 2.67030 2.72940 2.96437 3.00493 3.02971 3.35988 3.65287 3.75561 4.15014 4.26493 4.36833 4.39617 4.78204 4.84210 4.95914 5.10735 5.13387 5.20598 5.31325 5.38830 5.40629 5.56670 5.69750 5.80898 5.97326 6.06710 6.17381 6.30982 6.46419 6.55807 6.83175 6.87807 6.95142 7.06206 7.22041 7.52714 7.68054 7.74559 7.79561 7.99122 8.25222 8.50857 8.51240 9.25542 9.91397 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.003020 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.586660 B = 9268.660795 C =10328.664984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.441 4.441 8 H 0.087 0.913 9 C 0.056 3.944 10 C 0.006 3.994 11 N -0.490 5.490 12 C 0.157 3.843 13 F -0.149 7.149 14 C -0.058 4.058 15 C -0.161 4.161 16 C 0.068 3.932 17 N -0.300 5.300 18 N -0.378 5.378 19 C 0.179 3.821 20 C -0.060 4.060 21 C -0.153 4.153 22 C 0.095 3.905 23 N -0.482 5.482 24 C 0.094 3.906 25 C -0.137 4.137 26 C 0.064 3.936 27 C -0.100 4.100 28 H 0.285 0.715 29 H 0.137 0.863 30 H 0.182 0.818 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.172 0.828 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.203 -4.098 6.472 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.105 0.895 9 C 0.052 3.948 10 C -0.156 4.156 11 N -0.202 5.202 12 C 0.003 3.997 13 F -0.129 7.129 14 C -0.063 4.063 15 C -0.173 4.173 16 C -0.119 4.119 17 N -0.120 5.120 18 N -0.161 5.161 19 C 0.057 3.943 20 C -0.069 4.069 21 C -0.173 4.173 22 C -0.062 4.062 23 N -0.192 5.192 24 C -0.063 4.063 25 C -0.157 4.157 26 C -0.080 4.080 27 C -0.126 4.126 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.199 0.801 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.153 0.847 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.189 0.811 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.222 -5.095 7.895 15.416 hybrid contribution 0.628 1.679 -1.283 2.204 sum -11.594 -3.416 6.612 13.777 Atomic orbital electron populations 1.69790 1.07688 1.29850 1.33495 1.26000 0.94837 1.01781 0.92026 0.86156 0.80995 0.80306 0.78797 1.18107 1.19790 1.19481 1.19582 0.97934 0.90472 1.39004 0.89454 1.18501 0.92290 0.93767 0.90282 1.22265 1.02064 0.86638 1.04597 1.66252 1.07634 1.33731 1.12586 1.17565 0.95715 0.79680 1.06703 1.91374 1.82516 1.46738 1.92230 1.18436 0.94928 0.93031 0.99929 1.18800 0.94854 1.06375 0.97282 1.23965 0.94178 0.99155 0.94631 1.77126 1.08008 1.12739 1.14123 1.48221 1.11617 1.40298 1.15919 1.20458 0.80432 0.97929 0.95466 1.20289 0.96947 0.93955 0.95715 1.22104 1.00389 0.94650 1.00166 1.22742 0.95175 1.00361 0.87919 1.67664 1.10702 1.09888 1.30906 1.22766 0.95968 0.89926 0.97618 1.22059 0.99277 1.01377 0.93032 1.22476 0.90364 1.01380 0.93767 1.21684 0.97202 0.95560 0.98114 0.90369 0.84586 0.80090 0.88763 0.87519 0.84653 0.82624 0.82638 0.84503 0.81126 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.43 10.90 55.54 0.61 -17.82 16 2 C 0.07 1.65 5.19 -17.35 -0.09 1.56 16 3 Si 0.91 16.97 29.59 -169.99 -5.03 11.94 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.44 -10.50 9.08 -37.77 -0.34 -10.84 16 8 H 0.09 1.97 7.90 -52.48 -0.41 1.55 16 9 C 0.06 1.38 5.59 -106.70 -0.60 0.79 16 10 C 0.01 0.14 10.96 -16.72 -0.18 -0.05 16 11 N -0.49 -12.10 10.34 -12.59 -0.13 -12.23 16 12 C 0.16 3.76 8.38 -16.74 -0.14 3.62 16 13 F -0.15 -3.36 16.37 2.25 0.04 -3.32 16 14 C -0.06 -1.32 5.76 -104.74 -0.60 -1.93 16 15 C -0.16 -3.17 5.39 -105.34 -0.57 -3.74 16 16 C 0.07 1.23 11.94 -17.06 -0.20 1.02 16 17 N -0.30 -5.11 12.37 30.80 0.38 -4.73 16 18 N -0.38 -5.64 3.66 -62.27 -0.23 -5.86 16 19 C 0.18 1.85 6.68 -5.19 -0.03 1.82 16 20 C -0.06 -0.65 5.35 -104.32 -0.56 -1.21 16 21 C -0.15 -1.59 9.82 -39.44 -0.39 -1.97 16 22 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 23 N -0.48 -5.79 10.36 -13.25 -0.14 -5.93 16 24 C 0.09 0.99 11.18 -17.55 -0.20 0.79 16 25 C -0.14 -1.43 9.82 -39.44 -0.39 -1.82 16 26 C 0.06 1.08 10.79 -16.87 -0.18 0.90 16 27 C -0.10 -2.39 8.49 -38.29 -0.32 -2.72 16 28 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 29 H 0.14 2.94 8.06 -52.48 -0.42 2.52 16 30 H 0.18 2.97 8.06 -52.49 -0.42 2.55 16 31 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.11 0.82 8.03 -51.93 -0.42 0.41 16 33 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 34 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 38 H 0.14 3.36 6.20 -52.49 -0.33 3.03 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -29.73 345.42 -7.96 -37.69 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.67 Total: 8.02 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -4.99 Total: -12.96 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.49 Total: -46.57 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.73 -7.96 -37.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239052014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.702 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds