Wall clock time and date at job start Tue Mar 31 2020 14:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86807 * 119.99899 * 2 1 4 4 H 1.48492 * 109.47184 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47125 * 300.00348 * 3 2 1 6 6 H 1.48506 * 109.46818 * 59.99851 * 3 2 1 7 7 C 1.39890 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00308 * 163.46703 * 7 2 1 9 9 C 1.41366 * 119.99844 * 343.46625 * 7 2 1 10 10 C 1.40805 * 120.57777 * 155.73337 * 9 7 2 11 11 N 1.31505 * 120.68838 * 180.02562 * 10 9 7 12 12 C 1.32160 * 122.06552 * 0.02562 * 11 10 9 13 13 F 1.35103 * 119.45594 * 179.97438 * 12 11 10 14 14 C 1.40038 * 121.08944 * 0.02562 * 12 11 10 15 15 C 1.48492 * 120.41271 * 179.97438 * 14 12 11 16 16 C 1.40837 * 126.21741 * 129.69158 * 15 14 12 17 17 N 1.30686 * 108.09911 * 179.81828 * 16 15 14 18 18 N 1.40010 * 108.52523 * 0.44561 * 17 16 15 19 19 C 1.46503 * 125.89648 * 179.74015 * 18 17 16 20 20 C 1.50702 * 109.46760 * 304.96984 * 19 18 17 21 21 C 1.38650 * 120.78991 * 269.72278 * 20 19 18 22 22 C 1.38199 * 119.16513 * 179.80315 * 21 20 19 23 23 N 1.31873 * 120.76217 * 0.48072 * 22 21 20 24 24 C 1.31873 * 121.72438 * 359.74330 * 23 22 21 25 25 C 1.38201 * 120.76282 * 0.02581 * 24 23 22 26 26 C 1.34857 * 108.20641 * 359.71013 * 18 17 16 27 27 C 1.38930 * 119.17552 * 359.97438 * 14 12 11 28 28 H 0.96995 * 119.99925 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.65106 * 0.29541 * 10 9 7 30 30 H 1.07999 * 125.95373 * 0.02562 * 16 15 14 31 31 H 1.09002 * 109.47181 * 64.96999 * 19 18 17 32 32 H 1.08998 * 109.46810 * 184.96967 * 19 18 17 33 33 H 1.08005 * 120.42025 * 359.97438 * 21 20 19 34 34 H 1.08000 * 119.62661 * 180.20311 * 22 21 20 35 35 H 1.07998 * 119.61354 * 179.97438 * 24 23 22 36 36 H 1.08009 * 120.41697 * 179.97438 * 25 24 23 37 37 H 1.07999 * 126.19304 * 179.97438 * 26 18 17 38 38 H 1.08000 * 120.93587 * 180.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3465 -0.0006 5 1 1.8838 2.3965 -1.2124 6 1 1.8838 2.3965 1.2126 7 6 2.0082 -1.2114 -0.0005 8 1 3.0547 -1.2306 -0.2667 9 6 1.3452 -2.4106 0.3473 10 6 1.8238 -3.6527 -0.1115 11 7 1.2086 -4.7695 0.2103 12 6 0.1263 -4.7808 0.9687 13 9 -0.4641 -5.9590 1.2664 14 6 -0.4193 -3.5917 1.4681 15 6 -1.6362 -3.6219 2.3185 16 6 -1.7965 -2.9856 3.5647 17 7 -3.0023 -3.2413 3.9989 18 7 -3.6506 -4.0525 3.0598 19 6 -5.0172 -4.5690 3.1688 20 6 -5.1683 -5.3202 4.4665 21 6 -4.9082 -6.6804 4.5336 22 6 -5.0536 -7.3351 5.7420 23 7 -5.4436 -6.6829 6.8198 24 6 -5.7039 -5.3904 6.7920 25 6 -5.5761 -4.6687 5.6204 26 6 -2.8001 -4.2758 2.0374 27 6 0.1922 -2.3833 1.1579 28 1 -0.4850 0.8400 -0.0004 29 1 2.7080 -3.6890 -0.7307 30 1 -1.0536 -2.3876 4.0715 31 1 -5.7226 -3.7383 3.1456 32 1 -5.2193 -5.2407 2.3345 33 1 -4.5933 -7.2211 3.6533 34 1 -4.8499 -8.3939 5.8035 35 1 -6.0215 -4.8905 7.6950 36 1 -5.7912 -3.6103 5.6039 37 1 -3.0034 -4.8659 1.1560 38 1 -0.2042 -1.4494 1.5281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239052014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:50 Heat of formation + Delta-G solvation = 80.177084 kcal Electronic energy + Delta-G solvation = -25454.320985 eV Core-core repulsion = 21597.992834 eV Total energy + Delta-G solvation = -3856.328151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.32430 -42.19677 -41.01716 -39.95402 -35.96761 -35.87379 -33.62041 -32.43756 -32.18986 -32.10084 -29.87659 -27.61866 -27.31274 -24.50912 -24.16271 -23.74268 -23.29855 -21.65998 -21.30835 -19.24821 -18.44588 -18.11273 -17.69264 -17.49000 -17.36968 -16.75163 -16.59694 -16.41918 -15.83195 -15.47335 -15.31196 -14.95873 -14.65327 -14.62479 -14.20509 -14.00854 -13.93858 -13.75541 -13.60660 -13.55743 -13.36730 -13.00319 -12.80806 -12.48677 -12.28643 -11.94280 -11.73385 -11.20364 -10.83441 -10.61395 -10.52675 -10.33329 -10.22642 -10.12296 -9.66769 -8.92755 -8.72341 -6.44772 0.03668 0.16352 0.42513 0.83269 0.97830 1.44269 1.50025 1.59443 1.64031 1.86996 2.19955 2.63853 2.84010 3.28855 3.34828 3.53519 3.55740 3.61240 3.85170 3.95842 4.07284 4.15584 4.25297 4.28508 4.38011 4.38974 4.64737 4.67580 4.73515 4.81937 4.84309 4.91881 5.11592 5.15683 5.25069 5.27870 5.56005 5.70383 5.71425 5.84045 5.98199 6.03162 6.44177 6.65490 6.69632 6.71071 6.95778 7.40563 8.20761 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.003020 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.586660 B = 9268.660795 C =10328.664984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.461 4.461 8 H 0.094 0.906 9 C 0.037 3.963 10 C -0.009 4.009 11 N -0.504 5.504 12 C 0.136 3.864 13 F -0.144 7.144 14 C -0.044 4.044 15 C -0.203 4.203 16 C 0.057 3.943 17 N -0.305 5.305 18 N -0.363 5.363 19 C 0.169 3.831 20 C -0.071 4.071 21 C -0.157 4.157 22 C 0.083 3.917 23 N -0.507 5.507 24 C 0.084 3.916 25 C -0.142 4.142 26 C 0.080 3.920 27 C -0.118 4.118 28 H 0.294 0.706 29 H 0.152 0.848 30 H 0.187 0.813 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.148 0.852 37 H 0.192 0.808 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.164 -3.492 6.491 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.180 4.180 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.113 0.887 9 C 0.033 3.967 10 C -0.171 4.171 11 N -0.216 5.216 12 C -0.018 4.018 13 F -0.124 7.124 14 C -0.049 4.049 15 C -0.215 4.215 16 C -0.129 4.129 17 N -0.125 5.125 18 N -0.145 5.145 19 C 0.050 3.950 20 C -0.080 4.080 21 C -0.177 4.177 22 C -0.073 4.073 23 N -0.217 5.217 24 C -0.072 4.072 25 C -0.163 4.163 26 C -0.067 4.067 27 C -0.143 4.143 28 H 0.105 0.895 29 H 0.169 0.831 30 H 0.204 0.796 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.193 0.807 35 H 0.193 0.807 36 H 0.166 0.834 37 H 0.209 0.791 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.216 -4.511 7.933 16.061 hybrid contribution 0.791 1.442 -1.265 2.075 sum -12.425 -3.069 6.668 14.432 Atomic orbital electron populations 1.69832 1.09091 1.31293 1.33060 1.26830 0.95491 1.04738 0.90939 0.85069 0.79638 0.75708 0.78908 1.17670 1.19183 1.18990 1.19895 0.98445 0.91095 1.39566 0.88748 1.18816 0.92829 0.94463 0.90635 1.22506 1.02805 0.86435 1.05308 1.66230 1.08171 1.34160 1.13065 1.17765 0.96125 0.80300 1.07609 1.91365 1.82399 1.46380 1.92252 1.18555 0.95407 0.92023 0.98915 1.18805 0.95138 1.09374 0.98201 1.24056 0.94876 0.99536 0.94460 1.77085 1.07568 1.13162 1.14735 1.48574 1.12652 1.38706 1.14563 1.20948 0.78165 0.99295 0.96626 1.20405 0.97414 0.94284 0.95913 1.22342 0.99953 0.94734 1.00699 1.23141 0.94903 1.01428 0.87854 1.67691 1.11521 1.10684 1.31760 1.23154 0.95717 0.89742 0.98612 1.22254 0.99046 1.01955 0.92999 1.22714 0.89668 0.99955 0.94375 1.21642 0.97883 0.95755 0.99070 0.89498 0.83053 0.79623 0.86797 0.84327 0.83017 0.80729 0.80663 0.83447 0.79068 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.96 10.90 21.82 0.24 -37.72 16 2 C 0.04 1.69 5.19 85.24 0.44 2.13 16 3 Si 0.99 33.94 29.59 68.60 2.03 35.97 16 4 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 5 H -0.27 -8.91 7.11 99.48 0.71 -8.21 16 6 H -0.27 -8.89 7.11 99.48 0.71 -8.18 16 7 C -0.46 -22.11 9.08 23.44 0.21 -21.89 16 8 H 0.09 4.25 7.90 -2.91 -0.02 4.22 16 9 C 0.04 1.87 5.59 -21.21 -0.12 1.75 16 10 C -0.01 -0.45 10.96 85.37 0.94 0.49 16 11 N -0.50 -25.22 10.34 -193.74 -2.00 -27.23 16 12 C 0.14 6.53 8.38 85.08 0.71 7.25 16 13 F -0.14 -6.47 16.37 44.97 0.74 -5.74 16 14 C -0.04 -2.04 5.76 -19.94 -0.11 -2.15 16 15 C -0.20 -7.94 5.39 -20.33 -0.11 -8.05 16 16 C 0.06 2.05 11.94 85.50 1.02 3.08 16 17 N -0.30 -10.01 12.37 -56.46 -0.70 -10.71 16 18 N -0.36 -10.04 3.66 -350.93 -1.28 -11.33 16 19 C 0.17 2.99 6.68 85.63 0.57 3.56 16 20 C -0.07 -1.38 5.35 -19.67 -0.11 -1.48 16 21 C -0.16 -2.93 9.82 22.36 0.22 -2.71 16 22 C 0.08 1.65 11.18 84.68 0.95 2.59 16 23 N -0.51 -11.58 10.36 -195.85 -2.03 -13.61 16 24 C 0.08 1.66 11.18 84.68 0.95 2.61 16 25 C -0.14 -2.72 9.82 22.36 0.22 -2.50 16 26 C 0.08 2.54 10.79 83.81 0.90 3.44 16 27 C -0.12 -5.78 8.49 23.11 0.20 -5.58 16 28 H 0.29 12.42 8.30 -92.71 -0.77 11.65 16 29 H 0.15 6.63 8.06 -2.91 -0.02 6.61 16 30 H 0.19 6.23 8.06 -2.91 -0.02 6.21 16 31 H 0.11 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.14 1.59 8.03 -2.39 -0.02 1.57 16 33 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.19 5.20 8.06 -2.91 -0.02 5.18 16 38 H 0.13 6.48 6.20 -2.91 -0.02 6.46 16 Total: -1.00 -63.85 345.42 4.98 -58.87 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 1.11 Total: 28.98 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 6.88 Total: -17.47 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -5.78 Total: -100.60 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.74 Total: -5.74 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.97 kcal Total: -63.85 4.98 -58.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239052014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.044 kcal (2) G-P(sol) polarization free energy of solvation -63.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds