Wall clock time and date at job start Tue Mar 31 2020 14:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48496 * 109.46839 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46944 * 299.99436 * 3 2 1 6 6 H 1.48497 * 109.47275 * 59.99635 * 3 2 1 7 7 C 1.38811 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99322 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00555 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00168 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47250 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46751 * 60.00133 * 11 10 9 13 13 O 1.42901 * 109.47067 * 300.00157 * 11 10 9 14 14 C 1.52999 * 109.47360 * 179.97438 * 11 10 9 15 15 H 1.09004 * 109.46960 * 305.00287 * 14 11 10 16 16 C 1.50701 * 109.47205 * 184.99966 * 14 11 10 17 17 C 1.38230 * 119.98823 * 305.59101 * 16 14 11 18 18 C 1.38186 * 120.04943 * 179.76602 * 17 16 14 19 19 C 1.38498 * 120.02488 * 0.51015 * 18 17 16 20 20 F 1.35095 * 120.01472 * 179.76955 * 19 18 17 21 21 C 1.38397 * 119.97467 * 359.74501 * 19 18 17 22 22 C 1.38448 * 119.94978 * 359.97438 * 21 19 18 23 23 F 1.35102 * 120.01204 * 180.02562 * 22 21 19 24 24 N 1.46503 * 109.46817 * 65.00151 * 14 11 10 25 25 C 1.34426 * 126.82209 * 84.92490 * 24 14 11 26 26 N 1.30841 * 108.07584 * 179.89062 * 25 24 14 27 27 C 1.33239 * 109.82470 * 0.38265 * 26 25 24 28 28 N 1.30711 * 108.94997 * 359.76190 * 27 26 25 29 29 H 0.96995 * 119.99587 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99304 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47135 * 60.00290 * 10 9 7 32 32 H 1.08999 * 109.46863 * 300.00280 * 10 9 7 33 33 H 0.96694 * 114.00016 * 299.99760 * 13 11 10 34 34 H 1.08000 * 119.97654 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.99085 * 180.25717 * 18 17 16 36 36 H 1.08000 * 120.02999 * 180.02562 * 21 19 18 37 37 H 1.08001 * 125.96230 * 0.03631 * 25 24 14 38 38 H 1.08004 * 125.51932 * 179.80067 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4370 -4.7622 -0.8886 13 8 0.2428 -4.7438 1.1683 14 6 1.8289 -6.1448 0.0005 15 1 2.5205 -6.1646 -0.8418 16 6 0.8542 -7.2875 -0.1227 17 6 -0.1943 -7.4006 0.7710 18 6 -1.0916 -8.4453 0.6562 19 6 -0.9352 -9.3861 -0.3480 20 9 -1.8098 -10.4099 -0.4571 21 6 0.1173 -9.2768 -1.2401 22 6 1.0123 -8.2265 -1.1277 23 9 2.0399 -8.1183 -1.9982 24 7 2.5795 -6.2758 1.2519 25 6 2.1180 -6.7493 2.4223 26 7 3.0950 -6.7055 3.2915 27 6 4.1882 -6.2046 2.7176 28 7 3.9223 -5.9262 1.4685 29 1 -0.4849 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7146 0.8906 32 1 2.6848 -3.7145 -0.8894 33 1 0.7352 -4.7889 1.9992 34 1 -0.3148 -6.6697 1.5569 35 1 -1.9128 -8.5304 1.3524 36 1 0.2399 -10.0097 -2.0238 37 1 1.1163 -7.1059 2.6115 38 1 5.1400 -6.0538 3.2054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253895388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:24 Heat of formation + Delta-G solvation = 6.495452 kcal Electronic energy + Delta-G solvation = -27586.270414 eV Core-core repulsion = 23295.977964 eV Total energy + Delta-G solvation = -4290.292451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.45278 -49.41457 -42.32130 -39.74710 -37.79851 -34.42047 -34.14001 -31.69785 -31.32354 -31.12509 -30.73018 -28.76173 -25.91291 -23.88361 -23.33708 -22.98166 -21.81802 -21.66456 -21.03053 -18.62341 -17.85300 -17.60029 -17.21794 -17.11093 -16.34959 -16.12234 -15.99137 -15.69816 -15.40763 -15.03758 -14.77035 -14.71801 -14.50952 -14.22172 -14.05086 -13.66059 -13.23549 -13.02280 -12.67388 -12.46606 -12.35186 -12.10368 -12.00078 -11.71946 -11.13574 -10.97182 -10.84829 -10.32035 -10.09313 -10.07523 -9.84042 -9.79937 -9.53732 -9.47675 -9.09403 -8.94158 -6.97887 -5.79287 -3.09196 0.33926 0.55659 1.55845 2.11322 2.92648 2.94104 3.38899 3.41731 3.47510 3.49804 3.70614 3.91334 4.09995 4.23619 4.29917 4.41018 4.46624 4.62399 4.65936 4.73965 4.86537 5.18652 5.26121 5.33712 5.44102 5.46539 5.52136 5.61541 5.61830 5.71885 6.12038 6.15917 6.27229 6.36789 6.44679 6.58578 6.67950 7.52156 7.67953 8.01893 8.38482 9.50688 10.05029 10.41562 11.43005 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.003675 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.241715 B = 7617.856571 C = 8479.690462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.128 3.872 11 C 0.095 3.905 12 H 0.124 0.876 13 O -0.541 6.541 14 C 0.171 3.829 15 H 0.127 0.873 16 C -0.152 4.152 17 C -0.042 4.042 18 C -0.162 4.162 19 C 0.142 3.858 20 F -0.129 7.129 21 C -0.195 4.195 22 C 0.155 3.845 23 F -0.124 7.124 24 N -0.366 5.366 25 C 0.240 3.760 26 N -0.541 5.541 27 C 0.194 3.806 28 N -0.301 5.301 29 H 0.255 0.745 30 H 0.389 0.611 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.368 0.632 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.216 0.784 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 -21.934 1.262 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.000 4.000 11 C 0.034 3.966 12 H 0.142 0.858 13 O -0.346 6.346 14 C 0.067 3.933 15 H 0.145 0.855 16 C -0.155 4.155 17 C -0.060 4.060 18 C -0.181 4.181 19 C 0.122 3.878 20 F -0.107 7.107 21 C -0.215 4.215 22 C 0.135 3.865 23 F -0.102 7.102 24 N -0.157 5.157 25 C -0.056 4.056 26 N -0.268 5.268 27 C -0.109 4.109 28 N -0.127 5.127 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.216 0.784 34 H 0.182 0.818 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.232 0.768 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.192 -21.580 0.543 21.588 hybrid contribution 0.441 0.631 -0.017 0.770 sum 0.249 -20.949 0.526 20.957 Atomic orbital electron populations 1.69687 1.05085 1.25586 1.57424 1.24745 0.95526 0.97682 1.02751 0.86116 0.78826 0.84021 0.77230 1.20528 1.21775 1.21787 1.19241 0.91012 0.83988 1.43092 0.91233 1.42207 1.06024 0.99291 1.89464 1.21228 0.93138 0.86262 0.99391 1.22679 0.93015 0.90508 0.90351 0.85831 1.86589 1.36626 1.95774 1.15608 1.20863 0.92013 0.94699 0.85677 0.85543 1.19754 0.99783 0.97303 0.98615 1.21356 0.90699 0.95996 0.97957 1.21302 1.02168 0.95043 0.99565 1.17393 0.88334 0.86253 0.95789 1.91552 1.67010 1.56681 1.95472 1.20997 0.96330 1.00978 1.03196 1.17070 0.85990 0.94420 0.89012 1.91561 1.55956 1.95514 1.67152 1.50531 1.08570 1.46569 1.10075 1.26155 1.00689 0.96608 0.82150 1.70585 0.99722 1.23886 1.32592 1.26054 0.99004 0.96646 0.89151 1.78191 0.92204 1.23238 1.19086 0.93517 0.77673 0.95479 0.95329 0.78374 0.81835 0.83255 0.83021 0.76838 0.76654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -18.24 5.49 -59.91 -0.33 -18.57 16 10 C 0.13 2.51 5.81 -4.04 -0.02 2.49 16 11 C 0.10 1.40 2.78 -26.73 -0.07 1.32 16 12 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 13 O -0.54 -7.81 10.07 -35.23 -0.35 -8.17 16 14 C 0.17 2.07 2.88 -69.08 -0.20 1.87 16 15 H 0.13 1.59 7.15 -51.93 -0.37 1.22 16 16 C -0.15 -1.53 4.74 -104.55 -0.50 -2.03 16 17 C -0.04 -0.36 7.06 -39.60 -0.28 -0.64 16 18 C -0.16 -1.23 10.03 -39.50 -0.40 -1.62 16 19 C 0.14 1.20 7.30 -39.43 -0.29 0.91 16 20 F -0.13 -1.15 17.27 2.25 0.04 -1.11 16 21 C -0.20 -1.67 10.01 -39.45 -0.39 -2.07 16 22 C 0.16 1.55 7.25 -39.43 -0.29 1.26 16 23 F -0.12 -1.36 16.20 2.25 0.04 -1.33 16 24 N -0.37 -4.65 2.83 -57.24 -0.16 -4.81 16 25 C 0.24 2.74 9.63 -90.65 -0.87 1.87 16 26 N -0.54 -7.07 11.19 -15.83 -0.18 -7.24 16 27 C 0.19 2.50 13.03 -91.82 -1.20 1.30 16 28 N -0.30 -4.37 12.14 29.29 0.36 -4.02 16 29 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.39 10.36 7.54 -40.82 -0.31 10.05 16 31 H 0.03 0.57 7.23 -51.93 -0.38 0.19 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.37 4.95 6.99 45.56 0.32 5.27 16 34 H 0.16 1.30 4.51 -52.49 -0.24 1.06 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.22 1.72 5.40 -52.49 -0.28 1.44 16 38 H 0.22 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -33.33 330.55 -7.58 -40.91 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -2.92 Total: 11.99 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -4.75 Total: -2.73 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.41 Total: -62.09 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.35 Total: -8.17 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.08 Total: -2.43 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.33 -7.58 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253895388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.408 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds