Wall clock time and date at job start Tue Mar 31 2020 14:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48496 * 109.46839 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46944 * 299.99436 * 3 2 1 6 6 H 1.48497 * 109.47275 * 59.99635 * 3 2 1 7 7 C 1.38811 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99322 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00555 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00168 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47250 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46751 * 60.00133 * 11 10 9 13 13 O 1.42901 * 109.47067 * 300.00157 * 11 10 9 14 14 C 1.52999 * 109.47360 * 179.97438 * 11 10 9 15 15 H 1.09004 * 109.46960 * 305.00287 * 14 11 10 16 16 C 1.50701 * 109.47205 * 184.99966 * 14 11 10 17 17 C 1.38230 * 119.98823 * 305.59101 * 16 14 11 18 18 C 1.38186 * 120.04943 * 179.76602 * 17 16 14 19 19 C 1.38498 * 120.02488 * 0.51015 * 18 17 16 20 20 F 1.35095 * 120.01472 * 179.76955 * 19 18 17 21 21 C 1.38397 * 119.97467 * 359.74501 * 19 18 17 22 22 C 1.38448 * 119.94978 * 359.97438 * 21 19 18 23 23 F 1.35102 * 120.01204 * 180.02562 * 22 21 19 24 24 N 1.46503 * 109.46817 * 65.00151 * 14 11 10 25 25 C 1.34426 * 126.82209 * 84.92490 * 24 14 11 26 26 N 1.30841 * 108.07584 * 179.89062 * 25 24 14 27 27 C 1.33239 * 109.82470 * 0.38265 * 26 25 24 28 28 N 1.30711 * 108.94997 * 359.76190 * 27 26 25 29 29 H 0.96995 * 119.99587 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99304 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47135 * 60.00290 * 10 9 7 32 32 H 1.08999 * 109.46863 * 300.00280 * 10 9 7 33 33 H 0.96694 * 114.00016 * 299.99760 * 13 11 10 34 34 H 1.08000 * 119.97654 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.99085 * 180.25717 * 18 17 16 36 36 H 1.08000 * 120.02999 * 180.02562 * 21 19 18 37 37 H 1.08001 * 125.96230 * 0.03631 * 25 24 14 38 38 H 1.08004 * 125.51932 * 179.80067 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4370 -4.7622 -0.8886 13 8 0.2428 -4.7438 1.1683 14 6 1.8289 -6.1448 0.0005 15 1 2.5205 -6.1646 -0.8418 16 6 0.8542 -7.2875 -0.1227 17 6 -0.1943 -7.4006 0.7710 18 6 -1.0916 -8.4453 0.6562 19 6 -0.9352 -9.3861 -0.3480 20 9 -1.8098 -10.4099 -0.4571 21 6 0.1173 -9.2768 -1.2401 22 6 1.0123 -8.2265 -1.1277 23 9 2.0399 -8.1183 -1.9982 24 7 2.5795 -6.2758 1.2519 25 6 2.1180 -6.7493 2.4223 26 7 3.0950 -6.7055 3.2915 27 6 4.1882 -6.2046 2.7176 28 7 3.9223 -5.9262 1.4685 29 1 -0.4849 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7146 0.8906 32 1 2.6848 -3.7145 -0.8894 33 1 0.7352 -4.7889 1.9992 34 1 -0.3148 -6.6697 1.5569 35 1 -1.9128 -8.5304 1.3524 36 1 0.2399 -10.0097 -2.0238 37 1 1.1163 -7.1059 2.6115 38 1 5.1400 -6.0538 3.2054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253895388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:23 Heat of formation + Delta-G solvation = -14.802796 kcal Electronic energy + Delta-G solvation = -27587.193976 eV Core-core repulsion = 23295.977964 eV Total energy + Delta-G solvation = -4291.216012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.23962 -50.08602 -43.29105 -40.59799 -38.88880 -36.17280 -35.28521 -33.25286 -32.52808 -31.90676 -31.65307 -30.12531 -27.33321 -25.17146 -24.48274 -23.84703 -23.09972 -22.74917 -22.02758 -19.37721 -19.32235 -18.71522 -18.41700 -18.17162 -17.10469 -17.08433 -16.81469 -16.56289 -16.43705 -16.28539 -16.13507 -15.70928 -15.52557 -15.32367 -15.23232 -14.96136 -14.71029 -14.23092 -13.84576 -13.70434 -13.33917 -13.10417 -13.00756 -12.83046 -12.74403 -12.63064 -12.31465 -12.10041 -11.90954 -11.45090 -11.08568 -11.04404 -10.83194 -10.57767 -10.19731 -9.86410 -9.06729 -7.99090 -5.29050 -0.38668 -0.10963 0.60604 1.19920 1.45101 1.45483 1.55780 1.96464 2.22289 2.50070 2.68566 2.79426 3.15103 3.20195 3.34933 3.35937 3.40266 3.54056 3.69606 3.81576 3.87980 4.00201 4.09574 4.23925 4.27177 4.35070 4.61657 4.67989 4.80315 4.82469 4.95901 4.99064 5.02289 5.22496 5.43061 5.43898 5.60483 5.75252 6.21514 6.37584 7.05437 7.29794 8.01501 8.27668 9.23754 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.003675 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.241715 B = 7617.856571 C = 8479.690462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.251 4.251 8 H 0.068 0.932 9 N -0.735 5.735 10 C 0.130 3.870 11 C 0.110 3.890 12 H 0.125 0.875 13 O -0.541 6.541 14 C 0.184 3.816 15 H 0.118 0.882 16 C -0.157 4.157 17 C -0.042 4.042 18 C -0.149 4.149 19 C 0.140 3.860 20 F -0.130 7.130 21 C -0.191 4.191 22 C 0.142 3.858 23 F -0.134 7.134 24 N -0.372 5.372 25 C 0.249 3.751 26 N -0.559 5.559 27 C 0.193 3.807 28 N -0.340 5.340 29 H 0.253 0.747 30 H 0.379 0.621 31 H 0.019 0.981 32 H 0.024 0.976 33 H 0.373 0.627 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.246 0.754 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -23.040 1.842 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.801 3.199 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.379 5.379 10 C 0.003 3.997 11 C 0.050 3.950 12 H 0.143 0.857 13 O -0.346 6.346 14 C 0.080 3.920 15 H 0.136 0.864 16 C -0.160 4.160 17 C -0.060 4.060 18 C -0.167 4.167 19 C 0.120 3.880 20 F -0.109 7.109 21 C -0.210 4.210 22 C 0.122 3.878 23 F -0.113 7.113 24 N -0.163 5.163 25 C -0.047 4.047 26 N -0.287 5.287 27 C -0.110 4.110 28 N -0.167 5.167 29 H 0.062 0.938 30 H 0.212 0.788 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.222 0.778 34 H 0.189 0.811 35 H 0.193 0.807 36 H 0.184 0.816 37 H 0.262 0.738 38 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.558 -22.721 1.122 22.755 hybrid contribution 0.559 0.879 -0.175 1.056 sum 0.001 -21.842 0.947 21.862 Atomic orbital electron populations 1.69825 1.06470 1.26131 1.58893 1.25530 0.96394 1.00918 1.03202 0.85106 0.78088 0.79832 0.76908 1.19432 1.21645 1.21771 1.19568 0.91200 0.85420 1.42057 0.91378 1.42336 1.05734 1.00447 1.89364 1.21312 0.93910 0.86081 0.98429 1.22402 0.91990 0.89989 0.90659 0.85720 1.86586 1.36495 1.95831 1.15718 1.20575 0.91881 0.94070 0.85426 0.86382 1.19604 0.99956 0.96859 0.99566 1.21407 0.90365 0.96471 0.97747 1.21542 1.02107 0.93824 0.99268 1.17490 0.88192 0.86367 0.95953 1.91556 1.67015 1.56792 1.95489 1.21135 0.95802 1.00629 1.03472 1.17180 0.86346 0.95138 0.89134 1.91535 1.56542 1.95644 1.67553 1.50531 1.08237 1.46943 1.10546 1.26771 1.01491 0.95107 0.81314 1.70624 1.00197 1.24687 1.33180 1.26643 0.99972 0.95577 0.88768 1.78142 0.93492 1.24815 1.20213 0.93833 0.78765 0.96361 0.95785 0.77818 0.81127 0.80717 0.81573 0.73832 0.74158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.85 13.06 21.65 0.28 -58.56 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 3 Si 0.97 46.49 29.55 68.60 2.03 48.51 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 9 N -0.74 -37.40 5.49 -343.46 -1.89 -39.29 16 10 C 0.13 5.14 5.81 86.38 0.50 5.65 16 11 C 0.11 3.20 2.78 30.59 0.09 3.29 16 12 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 13 O -0.54 -15.03 10.07 -148.98 -1.50 -16.53 16 14 C 0.18 4.35 2.88 44.24 0.13 4.48 16 15 H 0.12 3.00 7.15 -2.39 -0.02 2.98 16 16 C -0.16 -2.95 4.74 -19.82 -0.09 -3.04 16 17 C -0.04 -0.61 7.06 22.26 0.16 -0.45 16 18 C -0.15 -1.80 10.03 22.32 0.22 -1.58 16 19 C 0.14 2.00 7.30 22.37 0.16 2.16 16 20 F -0.13 -1.99 17.27 44.97 0.78 -1.21 16 21 C -0.19 -2.90 10.01 22.36 0.22 -2.68 16 22 C 0.14 2.66 7.25 22.37 0.16 2.82 16 23 F -0.13 -2.91 16.20 44.97 0.73 -2.18 16 24 N -0.37 -9.16 2.83 -335.00 -0.95 -10.10 16 25 C 0.25 5.29 9.63 180.36 1.74 7.03 16 26 N -0.56 -13.89 11.19 -204.00 -2.28 -16.17 16 27 C 0.19 4.81 13.03 180.77 2.36 7.16 16 28 N -0.34 -9.80 12.14 -61.25 -0.74 -10.55 16 29 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.38 20.48 7.54 -92.71 -0.70 19.78 16 31 H 0.02 0.78 7.23 -2.39 -0.02 0.76 16 32 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.37 9.58 6.99 -74.06 -0.52 9.06 16 34 H 0.17 2.24 4.51 -2.91 -0.01 2.23 16 35 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 36 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.25 3.29 5.40 -2.91 -0.02 3.28 16 38 H 0.24 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -71.20 330.55 3.34 -67.86 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.06 Total: 30.23 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 6.95 Total: 7.99 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -5.58 Total: -134.67 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -1.50 Total: -16.53 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 1.51 Total: -3.39 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -71.20 3.34 -67.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253895388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.059 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds