Wall clock time and date at job start Tue Mar 31 2020 14:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.34962 * 117.00348 * 2 1 4 4 O 1.21698 * 120.00052 * 359.97438 * 3 2 1 5 5 C 1.41648 * 120.00238 * 180.02562 * 3 2 1 6 6 N 1.38364 * 126.04905 * 359.97438 * 5 3 2 7 7 H 0.96996 * 125.31572 * 0.03646 * 6 5 3 8 8 C 1.34161 * 109.37981 * 179.97438 * 6 5 3 9 9 C 1.38172 * 108.90240 * 359.97438 * 8 6 5 10 10 C 1.47056 * 126.40518 * 179.97438 * 9 8 6 11 11 O 1.21551 * 119.99641 * 186.28385 * 10 9 8 12 12 O 1.34780 * 119.99857 * 6.28112 * 10 9 8 13 13 C 1.38397 * 126.05337 * 179.97438 * 5 3 2 14 14 N 1.39069 * 126.68415 * 0.03869 * 13 5 3 15 15 C 1.34782 * 120.00000 * 125.96017 * 14 13 5 16 16 O 1.21271 * 119.99753 * 5.57347 * 15 14 13 17 17 C 1.50694 * 119.99941 * 185.57044 * 15 14 13 18 18 C 1.53001 * 109.46940 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47012 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.47161 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99672 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00285 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 120.00103 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46891 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46766 * 119.99995 * 24 22 20 27 27 H 1.48491 * 109.47035 * 239.99958 * 24 22 20 28 28 H 1.09008 * 109.46990 * 299.99996 * 1 2 3 29 29 H 1.09002 * 109.47313 * 59.99712 * 1 2 3 30 30 H 1.09004 * 109.47541 * 180.02562 * 1 2 3 31 31 H 1.08007 * 125.54868 * 179.72924 * 8 6 5 32 32 H 0.96709 * 116.99937 * 180.02562 * 12 10 9 33 33 H 0.96998 * 120.00284 * 305.95825 * 14 13 5 34 34 H 1.09002 * 109.47263 * 299.99872 * 17 15 14 35 35 H 1.09005 * 109.47424 * 59.99960 * 17 15 14 36 36 H 1.08989 * 109.47324 * 299.99782 * 18 17 15 37 37 H 1.08995 * 109.46989 * 60.00303 * 18 17 15 38 38 H 1.09002 * 109.47262 * 299.99891 * 19 18 17 39 39 H 1.09002 * 109.46854 * 59.99924 * 19 18 17 40 40 H 0.96995 * 120.00576 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0417 1.2025 0.0000 4 8 1.3790 2.2232 -0.0005 5 6 3.4563 1.2766 -0.0005 6 7 4.3279 0.2020 -0.0006 7 1 4.0665 -0.7320 -0.0008 8 6 5.5912 0.6536 -0.0018 9 6 5.5728 2.0352 -0.0031 10 6 6.7446 2.9237 -0.0040 11 8 6.5966 4.1247 0.1101 12 8 7.9825 2.4062 -0.1314 13 6 4.2111 2.4366 -0.0011 14 7 3.7295 3.7412 -0.0005 15 6 4.1401 4.6107 0.9440 16 8 5.0039 4.2874 1.7313 17 6 3.5256 5.9845 1.0216 18 6 4.1651 6.7649 2.1719 19 6 3.5417 8.1599 2.2503 20 6 4.1719 8.9288 3.3828 21 1 4.9399 8.4684 3.9865 22 6 3.7673 10.2197 3.6489 23 7 2.8310 10.7800 2.9147 24 14 4.5480 11.1726 5.0532 25 1 5.5677 10.3239 5.7206 26 1 5.1964 12.3976 4.5200 27 1 3.5012 11.5540 6.0349 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 6.4783 0.0374 0.0021 32 1 8.7217 3.0297 -0.1262 33 1 3.0982 4.0255 -0.6798 34 1 3.6982 6.5132 0.0842 35 1 2.4534 5.8937 1.1955 36 1 3.9929 6.2364 3.1094 37 1 5.2371 6.8557 1.9975 38 1 3.7142 8.6883 1.3126 39 1 2.4694 8.0695 2.4244 40 1 2.5460 11.6880 3.1021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598913043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:30 Heat of formation + Delta-G solvation = -174.176234 kcal Electronic energy + Delta-G solvation = -27235.099919 eV Core-core repulsion = 23015.767721 eV Total energy + Delta-G solvation = -4219.332198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.22330 -40.43187 -39.46215 -39.16393 -36.89069 -35.82934 -34.74368 -33.99882 -31.97144 -31.37746 -30.19615 -28.11063 -27.50303 -24.64219 -23.95449 -23.33672 -21.41939 -21.00676 -19.74357 -19.48897 -19.26328 -17.78138 -17.40327 -17.02039 -16.73293 -16.22613 -16.08104 -15.96032 -15.61180 -15.40358 -15.15066 -14.53807 -14.33942 -14.04955 -13.75211 -13.42827 -13.38054 -13.12753 -12.72489 -12.45135 -12.17462 -11.70770 -11.42356 -11.23493 -11.11390 -11.04376 -10.74205 -10.47840 -10.45703 -10.41241 -10.14075 -9.56346 -9.52999 -9.17791 -9.09714 -8.91741 -8.49876 -8.23202 -5.88791 -3.89502 0.65971 1.32073 2.31556 2.43449 2.63849 3.04000 3.13590 3.28520 3.39145 3.39671 3.46450 3.52902 4.39685 4.51023 4.56975 4.77951 4.80829 4.87156 4.93113 5.22367 5.25449 5.47148 5.55763 5.78227 5.88504 5.89924 5.93083 6.06116 6.42174 6.60114 6.69970 6.73824 6.88923 7.08425 7.30929 7.41537 7.59527 7.82746 7.96850 8.09279 8.13203 8.57337 8.60874 9.17907 9.73776 11.22883 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.003018 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.825910 B = 9276.199598 C =10936.098771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.364 6.364 3 C 0.537 3.463 4 O -0.492 6.492 5 C -0.090 4.090 6 N -0.507 5.507 7 H 0.434 0.566 8 C 0.130 3.870 9 C -0.219 4.219 10 C 0.546 3.454 11 O -0.480 6.480 12 O -0.525 6.525 13 C 0.253 3.747 14 N -0.662 5.662 15 C 0.526 3.474 16 O -0.499 6.499 17 C -0.131 4.131 18 C -0.093 4.093 19 C 0.020 3.980 20 C -0.514 4.514 21 H 0.056 0.944 22 C 0.054 3.946 23 N -0.898 5.898 24 Si 0.891 3.109 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.197 0.803 32 H 0.413 0.587 33 H 0.416 0.584 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 -29.390 -11.895 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.282 6.282 3 C 0.384 3.616 4 O -0.380 6.380 5 C -0.200 4.200 6 N -0.103 5.103 7 H 0.274 0.726 8 C -0.016 4.016 9 C -0.229 4.229 10 C 0.388 3.612 11 O -0.366 6.366 12 O -0.338 6.338 13 C 0.149 3.851 14 N -0.311 5.311 15 C 0.316 3.684 16 O -0.370 6.370 17 C -0.171 4.171 18 C -0.131 4.131 19 C -0.017 4.017 20 C -0.552 4.552 21 H 0.074 0.926 22 C -0.146 4.146 23 N -0.538 5.538 24 Si 0.719 3.281 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.214 0.786 32 H 0.271 0.729 33 H 0.254 0.746 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.145 -29.123 -11.249 31.241 hybrid contribution 0.191 0.642 0.377 0.768 sum 1.336 -28.481 -10.873 30.515 Atomic orbital electron populations 1.22905 0.76147 1.03672 1.02897 1.86108 1.23992 1.32885 1.85181 1.18277 0.86816 0.82153 0.74401 1.90975 1.65378 1.35301 1.46350 1.17953 0.87534 0.87184 1.27281 1.41536 1.05406 1.09132 1.54246 0.72607 1.22601 0.87706 0.94182 0.97066 1.18629 0.90926 0.91921 1.21415 1.19465 0.81822 0.86399 0.73514 1.91005 1.86081 1.15939 1.43538 1.84473 1.16968 1.45987 1.86401 1.16819 0.89327 0.84507 0.94460 1.43062 1.48060 1.07329 1.32682 1.21268 0.81466 0.86740 0.78950 1.90654 1.28598 1.77610 1.40111 1.21793 1.01411 0.90591 1.03318 1.21431 0.99830 0.97138 0.94667 1.19141 0.95916 0.89606 0.97056 1.21323 1.20829 0.98217 1.14858 0.92559 1.25022 0.95235 0.97758 0.96588 1.69976 1.29960 1.14230 1.39648 0.86547 0.79254 0.79897 0.82402 1.19708 1.21090 1.21106 0.91800 0.91878 0.88035 0.78576 0.72870 0.74643 0.89210 0.89179 0.92886 0.92466 0.96551 0.96600 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.45 101.05 1.06 1.30 16 2 O -0.36 -3.13 10.44 -41.21 -0.43 -3.56 16 3 C 0.54 6.09 7.73 32.03 0.25 6.33 16 4 O -0.49 -6.93 15.61 -19.42 -0.30 -7.23 16 5 C -0.09 -0.97 6.88 -83.56 -0.58 -1.54 16 6 N -0.51 -3.26 5.99 -10.11 -0.06 -3.32 16 7 H 0.43 1.20 8.96 -40.82 -0.37 0.84 16 8 C 0.13 0.91 11.71 -16.56 -0.19 0.71 16 9 C -0.22 -2.66 5.74 -104.92 -0.60 -3.27 16 10 C 0.55 7.62 7.94 34.31 0.27 7.90 16 11 O -0.48 -8.87 13.61 -27.37 -0.37 -9.24 16 12 O -0.53 -5.06 13.26 -40.71 -0.54 -5.60 16 13 C 0.25 3.43 6.18 -83.10 -0.51 2.91 16 14 N -0.66 -9.99 4.49 -9.42 -0.04 -10.03 16 15 C 0.53 9.84 6.46 -10.99 -0.07 9.77 16 16 O -0.50 -10.88 12.72 -18.68 -0.24 -11.12 16 17 C -0.13 -2.49 5.70 -27.89 -0.16 -2.65 16 18 C -0.09 -2.18 4.44 -26.73 -0.12 -2.30 16 19 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 20 C -0.51 -15.52 9.11 -34.44 -0.31 -15.84 16 21 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 22 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.90 -28.01 13.29 55.43 0.74 -27.27 16 24 Si 0.89 22.74 29.54 -169.99 -5.02 17.72 16 25 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 28 H 0.06 0.46 8.13 -51.92 -0.42 0.04 16 29 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.20 0.56 8.06 -52.48 -0.42 0.13 16 32 H 0.41 2.55 9.11 45.56 0.42 2.96 16 33 H 0.42 5.36 8.50 -40.82 -0.35 5.02 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 37 H 0.06 1.42 8.10 -51.93 -0.42 0.99 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -41.13 356.89 -6.16 -47.30 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.06 Total: 1.69 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.21 Total: 5.29 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.63 Total: -40.62 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.88 Total: -36.75 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -41.13 -6.16 -47.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598913043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.880 kcal (2) G-P(sol) polarization free energy of solvation -41.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds