Wall clock time and date at job start Tue Mar 31 2020 14:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.34962 * 117.00348 * 2 1 4 4 O 1.21698 * 120.00052 * 359.97438 * 3 2 1 5 5 C 1.41648 * 120.00238 * 180.02562 * 3 2 1 6 6 N 1.38364 * 126.04905 * 359.97438 * 5 3 2 7 7 H 0.96996 * 125.31572 * 0.03646 * 6 5 3 8 8 C 1.34161 * 109.37981 * 179.97438 * 6 5 3 9 9 C 1.38172 * 108.90240 * 359.97438 * 8 6 5 10 10 C 1.47056 * 126.40518 * 179.97438 * 9 8 6 11 11 O 1.21551 * 119.99641 * 186.28385 * 10 9 8 12 12 O 1.34780 * 119.99857 * 6.28112 * 10 9 8 13 13 C 1.38397 * 126.05337 * 179.97438 * 5 3 2 14 14 N 1.39069 * 126.68415 * 0.03869 * 13 5 3 15 15 C 1.34782 * 120.00000 * 125.96017 * 14 13 5 16 16 O 1.21271 * 119.99753 * 5.57347 * 15 14 13 17 17 C 1.50694 * 119.99941 * 185.57044 * 15 14 13 18 18 C 1.53001 * 109.46940 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47012 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.47161 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99672 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00285 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 120.00103 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46891 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46766 * 119.99995 * 24 22 20 27 27 H 1.48491 * 109.47035 * 239.99958 * 24 22 20 28 28 H 1.09008 * 109.46990 * 299.99996 * 1 2 3 29 29 H 1.09002 * 109.47313 * 59.99712 * 1 2 3 30 30 H 1.09004 * 109.47541 * 180.02562 * 1 2 3 31 31 H 1.08007 * 125.54868 * 179.72924 * 8 6 5 32 32 H 0.96709 * 116.99937 * 180.02562 * 12 10 9 33 33 H 0.96998 * 120.00284 * 305.95825 * 14 13 5 34 34 H 1.09002 * 109.47263 * 299.99872 * 17 15 14 35 35 H 1.09005 * 109.47424 * 59.99960 * 17 15 14 36 36 H 1.08989 * 109.47324 * 299.99782 * 18 17 15 37 37 H 1.08995 * 109.46989 * 60.00303 * 18 17 15 38 38 H 1.09002 * 109.47262 * 299.99891 * 19 18 17 39 39 H 1.09002 * 109.46854 * 59.99924 * 19 18 17 40 40 H 0.96995 * 120.00576 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0417 1.2025 0.0000 4 8 1.3790 2.2232 -0.0005 5 6 3.4563 1.2766 -0.0005 6 7 4.3279 0.2020 -0.0006 7 1 4.0665 -0.7320 -0.0008 8 6 5.5912 0.6536 -0.0018 9 6 5.5728 2.0352 -0.0031 10 6 6.7446 2.9237 -0.0040 11 8 6.5966 4.1247 0.1101 12 8 7.9825 2.4062 -0.1314 13 6 4.2111 2.4366 -0.0011 14 7 3.7295 3.7412 -0.0005 15 6 4.1401 4.6107 0.9440 16 8 5.0039 4.2874 1.7313 17 6 3.5256 5.9845 1.0216 18 6 4.1651 6.7649 2.1719 19 6 3.5417 8.1599 2.2503 20 6 4.1719 8.9288 3.3828 21 1 4.9399 8.4684 3.9865 22 6 3.7673 10.2197 3.6489 23 7 2.8310 10.7800 2.9147 24 14 4.5480 11.1726 5.0532 25 1 5.5677 10.3239 5.7206 26 1 5.1964 12.3976 4.5200 27 1 3.5012 11.5540 6.0349 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 6.4783 0.0374 0.0021 32 1 8.7217 3.0297 -0.1262 33 1 3.0982 4.0255 -0.6798 34 1 3.6982 6.5132 0.0842 35 1 2.4534 5.8937 1.1955 36 1 3.9929 6.2364 3.1094 37 1 5.2371 6.8557 1.9975 38 1 3.7142 8.6883 1.3126 39 1 2.4694 8.0695 2.4244 40 1 2.5460 11.6880 3.1021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598913043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:29 Heat of formation + Delta-G solvation = -205.409277 kcal Electronic energy + Delta-G solvation = -27236.454286 eV Core-core repulsion = 23015.767721 eV Total energy + Delta-G solvation = -4220.686565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.04027 -41.27824 -40.52960 -40.35320 -37.72746 -36.81399 -36.23625 -35.75484 -34.03762 -32.24881 -31.19488 -29.64780 -28.49528 -26.09465 -25.29821 -24.19661 -22.95143 -21.89412 -21.44872 -20.60134 -20.02546 -18.73718 -18.65381 -18.21662 -17.94222 -17.57292 -17.05615 -16.95839 -16.65123 -16.55436 -16.49322 -16.29986 -15.40714 -15.04382 -14.96038 -14.73437 -14.31810 -14.22493 -14.15077 -13.80643 -13.75186 -13.11952 -13.02414 -12.65411 -12.53851 -12.39871 -12.35859 -11.94858 -11.80397 -11.59276 -11.52003 -11.44373 -11.29273 -11.22259 -10.81869 -10.55396 -9.94186 -9.45362 -8.20406 -6.30888 -0.17607 0.49026 1.38283 1.39251 1.53319 1.55124 1.64741 1.73561 1.87373 2.14443 2.32833 2.41220 2.46444 3.11943 3.71452 3.76558 3.86741 4.09037 4.17516 4.23939 4.30806 4.32601 4.34303 4.69026 4.73409 4.79634 4.93579 4.96983 5.07769 5.17332 5.19618 5.26658 5.52080 5.63529 5.73639 5.78491 5.85322 6.21632 6.26385 6.39079 6.60144 6.83878 7.17588 7.28366 7.37501 8.91706 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.003018 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.825910 B = 9276.199598 C =10936.098771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.537 3.463 4 O -0.528 6.528 5 C -0.091 4.091 6 N -0.480 5.480 7 H 0.456 0.544 8 C 0.180 3.820 9 C -0.262 4.262 10 C 0.546 3.454 11 O -0.539 6.539 12 O -0.507 6.507 13 C 0.214 3.786 14 N -0.653 5.653 15 C 0.529 3.471 16 O -0.535 6.535 17 C -0.126 4.126 18 C -0.075 4.075 19 C 0.027 3.973 20 C -0.546 4.546 21 H 0.051 0.949 22 C 0.001 3.999 23 N -0.930 5.930 24 Si 0.966 3.034 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.139 0.861 31 H 0.250 0.750 32 H 0.427 0.573 33 H 0.422 0.578 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.040 0.960 37 H 0.038 0.962 38 H -0.001 1.001 39 H 0.001 0.999 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -32.248 -11.948 34.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.269 6.269 3 C 0.385 3.615 4 O -0.419 6.419 5 C -0.201 4.201 6 N -0.077 5.077 7 H 0.300 0.700 8 C 0.032 3.968 9 C -0.270 4.270 10 C 0.390 3.610 11 O -0.429 6.429 12 O -0.321 6.321 13 C 0.110 3.890 14 N -0.301 5.301 15 C 0.319 3.681 16 O -0.410 6.410 17 C -0.165 4.165 18 C -0.113 4.113 19 C -0.010 4.010 20 C -0.584 4.584 21 H 0.069 0.931 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.790 3.210 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.266 0.734 32 H 0.288 0.712 33 H 0.261 0.739 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.754 -32.084 -11.345 34.076 hybrid contribution -0.010 1.371 0.319 1.408 sum 1.744 -30.713 -11.026 32.678 Atomic orbital electron populations 1.23192 0.74852 1.05912 1.02372 1.86107 1.25161 1.31132 1.84514 1.18426 0.87065 0.82399 0.73611 1.90958 1.66203 1.36619 1.48071 1.17745 0.87689 0.87595 1.27044 1.41539 1.04617 1.09380 1.52151 0.69956 1.23240 0.88911 0.92433 0.92235 1.18786 0.89773 0.94110 1.24370 1.19866 0.83112 0.85940 0.72032 1.90979 1.86967 1.18386 1.46599 1.84424 1.16264 1.45835 1.85530 1.17228 0.90823 0.84143 0.96809 1.42658 1.47610 1.08076 1.31773 1.20940 0.81007 0.86857 0.79344 1.90622 1.30188 1.78325 1.41833 1.21623 1.01809 0.91146 1.01970 1.21103 0.98644 0.95522 0.96081 1.19014 0.95014 0.91431 0.95563 1.21687 1.21431 0.99358 1.15955 0.93098 1.25955 0.95602 0.98660 0.99425 1.70084 1.30893 1.14880 1.41173 0.85392 0.78515 0.78305 0.78798 1.19206 1.19919 1.19869 0.92811 0.92019 0.84350 0.73436 0.71185 0.73870 0.87849 0.87725 0.94090 0.94272 0.98221 0.98098 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.45 113.37 1.18 1.52 16 2 O -0.35 -5.30 10.44 -58.79 -0.61 -5.91 16 3 C 0.54 11.60 7.73 68.66 0.53 12.13 16 4 O -0.53 -14.94 15.61 19.19 0.30 -14.64 16 5 C -0.09 -1.80 6.88 38.99 0.27 -1.53 16 6 N -0.48 -4.37 5.99 -185.90 -1.11 -5.49 16 7 H 0.46 0.37 8.96 -92.71 -0.83 -0.46 16 8 C 0.18 1.79 11.71 84.32 0.99 2.77 16 9 C -0.26 -6.01 5.74 -20.06 -0.12 -6.12 16 10 C 0.55 15.11 7.94 70.13 0.56 15.66 16 11 O -0.54 -20.75 13.61 27.38 0.37 -20.38 16 12 O -0.51 -8.92 13.26 -56.91 -0.75 -9.67 16 13 C 0.21 5.70 6.18 38.95 0.24 5.94 16 14 N -0.65 -20.30 4.49 -302.12 -1.36 -21.66 16 15 C 0.53 20.64 6.46 87.65 0.57 21.21 16 16 O -0.54 -24.40 12.72 20.18 0.26 -24.14 16 17 C -0.13 -4.97 5.70 29.85 0.17 -4.80 16 18 C -0.08 -3.73 4.44 30.60 0.14 -3.59 16 19 C 0.03 1.54 4.97 29.85 0.15 1.69 16 20 C -0.55 -34.00 9.11 25.60 0.23 -33.77 16 21 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 22 C 0.00 0.08 5.46 84.65 0.46 0.54 16 23 N -0.93 -58.80 13.29 21.45 0.28 -58.52 16 24 Si 0.97 47.05 29.54 68.60 2.03 49.08 16 25 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 28 H 0.05 0.73 8.13 -2.38 -0.02 0.71 16 29 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.14 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.25 -0.17 8.06 -2.91 -0.02 -0.19 16 32 H 0.43 4.81 9.11 -74.05 -0.67 4.13 16 33 H 0.42 11.37 8.50 -92.71 -0.79 10.58 16 34 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.10 3.79 8.14 -2.38 -0.02 3.78 16 36 H 0.04 2.08 8.10 -2.39 -0.02 2.06 16 37 H 0.04 2.04 8.10 -2.39 -0.02 2.02 16 38 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 39 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -94.03 356.89 3.61 -90.42 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -1.16 Total: 9.27 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 5.37 Total: 11.64 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -2.19 Total: -85.66 kcal Atomic # 8 Polarization: -74.31 SS G_CDS: -0.44 Total: -74.75 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -94.03 3.61 -90.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598913043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.986 kcal (2) G-P(sol) polarization free energy of solvation -94.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds