Wall clock time and date at job start Tue Mar 31 2020 14:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00350 * 2 1 4 4 H 1.48497 * 109.47153 * 269.99639 * 3 2 1 5 5 H 1.48497 * 109.46916 * 29.99755 * 3 2 1 6 6 H 1.48506 * 109.47238 * 149.99360 * 3 2 1 7 7 C 1.37879 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99887 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99848 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47213 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.46986 * 180.02562 * 11 10 9 13 13 O 1.42105 * 110.54530 * 291.62628 * 12 11 10 14 14 O 1.42101 * 110.54333 * 68.37799 * 12 11 10 15 15 N 1.65599 * 104.44748 * 180.02562 * 12 11 10 16 16 C 1.47425 * 125.64936 * 269.68994 * 15 12 11 17 17 C 1.54692 * 104.94634 * 204.07337 * 16 15 12 18 18 C 1.55160 * 101.67551 * 323.28141 * 17 16 15 19 19 C 1.47027 * 125.65022 * 90.00236 * 15 12 11 20 20 H 1.08999 * 109.88319 * 59.48066 * 19 15 12 21 21 C 1.50703 * 109.88088 * 298.47447 * 19 15 12 22 22 C 1.38654 * 120.78831 * 319.72143 * 21 19 15 23 23 C 1.38205 * 119.15757 * 179.75477 * 22 21 19 24 24 N 1.31865 * 120.76651 * 0.53254 * 23 22 21 25 25 C 1.31872 * 121.72796 * 359.73664 * 24 23 22 26 26 C 1.38213 * 120.75962 * 359.97438 * 25 24 23 27 27 H 0.97010 * 119.99674 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46554 * 60.00704 * 9 7 2 29 29 H 1.08995 * 109.47565 * 300.00769 * 9 7 2 30 30 H 1.09004 * 109.46811 * 60.00336 * 10 9 7 31 31 H 1.09005 * 109.47229 * 300.00471 * 10 9 7 32 32 H 1.09003 * 109.46593 * 60.00151 * 11 10 9 33 33 H 1.08994 * 109.46870 * 300.00519 * 11 10 9 34 34 H 1.08999 * 110.36802 * 323.00980 * 16 15 12 35 35 H 1.09005 * 110.36320 * 85.32502 * 16 15 12 36 36 H 1.08994 * 111.10467 * 205.10904 * 17 16 15 37 37 H 1.08999 * 110.81273 * 81.31713 * 17 16 15 38 38 H 1.08998 * 110.71576 * 276.97355 * 18 17 16 39 39 H 1.08997 * 110.71814 * 153.69682 * 18 17 16 40 40 H 1.08004 * 120.41801 * 359.97438 * 22 21 19 41 41 H 1.07997 * 119.61464 * 180.24669 * 23 22 21 42 42 H 1.07997 * 119.62203 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.41254 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6368 0.0001 12 16 6.1560 -4.3470 -0.0005 13 8 5.8597 -4.9811 1.2363 14 8 5.8599 -4.9801 -1.2377 15 7 7.8056 -4.2021 0.0003 16 6 8.6626 -4.1328 -1.1972 17 6 10.0518 -4.6204 -0.7224 18 6 10.1201 -4.0275 0.7098 19 6 8.6587 -4.1278 1.1955 20 1 8.5296 -5.0259 1.7995 21 6 8.2999 -2.9092 2.0063 22 6 8.0081 -1.7043 1.3853 23 6 7.6783 -0.6093 2.1614 24 7 7.6497 -0.6988 3.4767 25 6 7.9268 -1.8268 4.1013 26 6 8.2593 -2.9648 3.3910 27 1 -0.4850 0.8402 -0.0004 28 1 3.8751 -0.6798 0.8896 29 1 3.8745 -0.6808 -0.8904 30 1 3.6578 -3.1506 -0.8897 31 1 3.6584 -3.1504 0.8903 32 1 5.9147 -2.1229 0.8901 33 1 5.9148 -2.1229 -0.8898 34 1 8.2767 -4.7877 -1.9783 35 1 8.7267 -3.1065 -1.5589 36 1 10.8454 -4.2164 -1.3508 37 1 10.0920 -5.7094 -0.6967 38 1 10.4465 -2.9880 0.6816 39 1 10.7785 -4.6227 1.3425 40 1 8.0346 -1.6235 0.3086 41 1 7.4457 0.3317 1.6853 42 1 7.8927 -1.8619 5.1801 43 1 8.4848 -3.8857 3.9082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109337607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:31 Heat of formation + Delta-G solvation = -39.302540 kcal Electronic energy + Delta-G solvation = -26287.094924 eV Core-core repulsion = 22652.197253 eV Total energy + Delta-G solvation = -3634.897671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.67704 -38.63532 -37.04043 -35.86656 -34.85939 -33.20504 -32.24897 -31.50729 -31.16095 -28.82069 -28.33348 -24.18155 -23.65809 -23.42017 -22.12898 -21.40235 -20.43026 -18.96595 -17.88185 -17.40727 -16.83358 -16.36715 -16.04920 -16.01101 -15.62909 -15.48321 -14.48451 -14.30544 -14.20333 -13.97794 -13.84755 -13.63180 -13.57294 -12.95011 -12.86626 -12.35876 -12.17886 -12.08488 -11.99896 -11.94454 -11.84166 -11.71358 -11.58812 -11.51079 -11.11685 -11.01077 -10.95893 -10.13209 -9.97741 -9.89053 -9.67288 -9.60309 -9.31157 -9.24003 -9.10995 -8.58370 -6.08104 -4.07388 0.26374 0.95037 0.99426 2.60568 3.26881 3.34951 3.37186 3.61927 3.84450 3.92475 4.17667 4.20840 4.34811 4.40948 4.45103 4.61470 4.67578 4.83498 4.94007 4.97264 5.00300 5.07719 5.13498 5.25743 5.34914 5.39299 5.45012 5.46964 5.50194 5.62111 5.70536 5.72080 5.77845 5.81923 6.05168 6.14262 6.21267 6.24169 6.51555 6.65241 7.11548 7.26363 7.71082 7.83878 8.47764 8.96019 9.53058 11.05199 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.004555 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.350803 B = 6146.012962 C = 7302.008396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.095 4.095 11 C -0.620 4.620 12 S 2.611 3.389 13 O -0.951 6.951 14 O -0.954 6.954 15 N -1.010 6.010 16 C 0.112 3.888 17 C -0.127 4.127 18 C -0.117 4.117 19 C 0.192 3.808 20 H 0.095 0.905 21 C -0.071 4.071 22 C -0.168 4.168 23 C 0.103 3.897 24 N -0.480 5.480 25 C 0.101 3.899 26 C -0.154 4.154 27 H 0.264 0.736 28 H 0.020 0.980 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.945 -6.885 1.949 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.092 0.908 9 C -0.040 4.040 10 C -0.135 4.135 11 C -0.752 4.752 12 S 2.709 3.291 13 O -0.942 6.942 14 O -0.945 6.945 15 N -0.846 5.846 16 C -0.013 4.013 17 C -0.166 4.166 18 C -0.156 4.156 19 C 0.086 3.914 20 H 0.113 0.887 21 C -0.081 4.081 22 C -0.189 4.189 23 C -0.053 4.053 24 N -0.189 5.189 25 C -0.056 4.056 26 C -0.174 4.174 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.175 0.825 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 25.007 -6.893 2.420 26.053 hybrid contribution 0.562 0.982 -0.494 1.235 sum 25.570 -5.911 1.925 26.315 Atomic orbital electron populations 1.69911 1.06289 1.26975 1.50685 1.25011 0.94746 0.99141 0.94411 0.86792 0.80474 0.83649 0.78491 1.20224 1.21226 1.18941 1.21120 0.89212 0.94763 1.51396 0.90778 1.19504 0.97329 0.90524 0.96671 1.21305 0.86443 1.03093 1.02631 1.30884 1.09664 1.23397 1.11236 1.05102 0.71568 0.78176 0.74283 1.93568 1.82270 1.73135 1.45197 1.93570 1.82317 1.73254 1.45325 1.58955 1.23486 1.90120 1.12070 1.22056 0.90271 1.01515 0.87501 1.22735 0.96451 1.01563 0.95892 1.22691 0.93679 1.02470 0.96809 1.20207 0.90806 0.94823 0.85593 0.88709 1.20731 0.97297 0.95547 0.94521 1.22090 1.01439 0.93412 1.01913 1.22849 0.94397 0.98652 0.89440 1.67708 1.12538 1.27633 1.10982 1.22827 0.94130 0.87935 1.00678 1.22028 1.01039 1.00525 0.93818 0.92623 0.96213 0.96622 0.91039 0.91163 0.85242 0.85351 0.89386 0.91450 0.89667 0.90327 0.90184 0.89707 0.84501 0.82449 0.82482 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.53 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.00 -0.04 4.04 -27.88 -0.11 -0.15 16 10 C -0.10 -1.92 5.16 -26.73 -0.14 -2.05 16 11 C -0.62 -9.50 5.05 37.16 0.19 -9.31 16 12 S 2.61 39.48 5.37 -107.50 -0.58 38.91 16 13 O -0.95 -16.97 17.60 -57.54 -1.01 -17.99 16 14 O -0.95 -16.76 17.28 -57.54 -0.99 -17.75 16 15 N -1.01 -10.95 2.70 -105.76 -0.29 -11.24 16 16 C 0.11 0.90 7.06 -2.65 -0.02 0.89 16 17 C -0.13 -0.73 7.07 -24.70 -0.17 -0.90 16 18 C -0.12 -0.71 6.47 -24.89 -0.16 -0.87 16 19 C 0.19 1.77 2.97 -68.10 -0.20 1.56 16 20 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 21 C -0.07 -0.74 4.58 -104.32 -0.48 -1.21 16 22 C -0.17 -1.79 6.17 -39.44 -0.24 -2.03 16 23 C 0.10 1.25 10.97 -17.55 -0.19 1.06 16 24 N -0.48 -6.39 10.36 -13.25 -0.14 -6.53 16 25 C 0.10 1.12 11.18 -17.54 -0.20 0.92 16 26 C -0.15 -1.54 9.79 -39.44 -0.39 -1.93 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 29 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.13 1.90 5.21 -51.92 -0.27 1.63 16 33 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.09 0.77 7.67 -51.93 -0.40 0.37 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.14 1.20 7.44 -52.48 -0.39 0.81 16 41 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 43 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -36.76 359.50 -10.49 -47.25 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.46 Total: -0.25 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -2.55 Total: -27.63 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.35 Total: -44.93 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -2.01 Total: -35.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 39.48 SS G_CDS: -0.58 Total: 38.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.76 -10.49 -47.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109337607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.950 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds