Wall clock time and date at job start Tue Mar 31 2020 14:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47106 * 2 1 4 4 O 1.33908 * 125.11474 * 270.19863 * 3 2 1 5 5 C 1.34923 * 111.37538 * 180.28959 * 4 3 2 6 6 C 1.38974 * 133.05622 * 179.75047 * 5 4 3 7 7 C 1.37847 * 119.97645 * 179.97438 * 6 5 4 8 8 C 1.38674 * 120.65699 * 359.97438 * 7 6 5 9 9 C 1.37862 * 120.19099 * 359.97438 * 8 7 6 10 10 C 1.39086 * 119.63551 * 0.02562 * 9 8 7 11 11 C 1.36396 * 125.11493 * 90.00162 * 3 2 1 12 12 C 1.46497 * 127.16885 * 0.02562 * 11 3 2 13 13 C 1.35469 * 120.00258 * 129.70603 * 12 11 3 14 14 C 1.41435 * 119.99760 * 180.02562 * 13 12 11 15 15 O 1.21820 * 120.00572 * 359.97438 * 14 13 12 16 16 N 1.34785 * 120.00007 * 179.97438 * 14 13 12 17 17 C 1.36806 * 119.99921 * 180.27204 * 16 14 13 18 18 H 1.07998 * 120.00230 * 20.33662 * 17 16 14 19 19 C 1.39037 * 119.99627 * 200.34073 * 17 16 14 20 20 N 1.31383 * 120.00646 * 21.33382 * 19 17 16 21 21 Si 1.86807 * 119.99799 * 201.33887 * 19 17 16 22 22 H 1.48503 * 109.46915 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47091 * 119.99794 * 21 19 17 24 24 H 1.48501 * 109.46818 * 239.99664 * 21 19 17 25 25 C 1.46501 * 119.99693 * 359.97438 * 16 14 13 26 26 C 1.47192 * 109.47263 * 83.84831 * 25 16 14 27 27 N 7.97499 * 116.25141 * 46.77026 * 2 1 3 28 28 H 1.09004 * 109.46811 * 299.99741 * 1 2 3 29 29 H 1.09002 * 109.47079 * 59.99938 * 1 2 3 30 30 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46451 * 239.99910 * 2 1 3 32 32 H 1.08994 * 109.47068 * 120.00705 * 2 1 3 33 33 H 1.07996 * 120.00731 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.67309 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.90626 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.18428 * 180.02562 * 9 8 7 37 37 H 1.08000 * 119.99190 * 309.71155 * 12 11 3 38 38 H 1.08000 * 120.00427 * 359.97438 * 13 12 11 39 39 H 0.96989 * 120.00278 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.46830 * 203.84454 * 25 16 14 41 41 H 1.09001 * 109.46934 * 323.84435 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2855 2.1483 -1.0954 5 6 2.7294 3.3814 -0.7749 6 6 3.1212 4.4763 -1.5360 7 6 3.5380 5.6337 -0.9141 8 6 3.5712 5.7205 0.4695 9 6 3.1853 4.6451 1.2410 10 6 2.7630 3.4723 0.6240 11 6 2.2939 2.1605 1.1157 12 6 2.1459 1.7400 2.5112 13 6 3.1662 1.9182 3.3843 14 6 3.0234 1.5117 4.7314 15 8 1.9827 1.0018 5.1068 16 7 4.0387 1.6885 5.6000 17 6 3.9025 1.2902 6.9017 18 1 3.1528 0.5597 7.1673 19 6 4.7294 1.8261 7.8827 20 7 5.3323 2.9753 7.6780 21 14 4.9832 0.9119 9.4919 22 1 4.1983 -0.3487 9.4741 23 1 6.4244 0.5959 9.6597 24 1 4.5280 1.7620 10.6212 25 6 5.2905 2.3012 5.1485 26 6 5.1600 3.7669 5.1836 27 7 5.0575 4.8989 5.2114 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.0990 4.4202 -2.6143 34 1 3.8417 6.4815 -1.5104 35 1 3.8994 6.6334 0.9441 36 1 3.2108 4.7129 2.3186 37 1 1.2232 1.2879 2.8438 38 1 4.0891 2.3699 3.0516 39 1 5.9088 3.3493 8.3625 40 1 6.1036 1.9931 5.8058 41 1 5.5055 1.9798 4.1294 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060332048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:01 Heat of formation + Delta-G solvation = 30.906270 kcal Electronic energy + Delta-G solvation = -26406.187699 eV Core-core repulsion = 22638.890559 eV Total energy + Delta-G solvation = -3767.297140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.50808 -40.81813 -38.88284 -37.70502 -36.40172 -35.95649 -34.29647 -33.78832 -32.17776 -31.30001 -29.64258 -29.18931 -27.26432 -25.34944 -24.42714 -23.79374 -22.21938 -21.25569 -20.03777 -19.67755 -18.78078 -18.10088 -17.82998 -17.55078 -17.28048 -16.66478 -16.44143 -16.00835 -15.47750 -15.22997 -15.12419 -14.90091 -14.81044 -14.74080 -14.33499 -14.05403 -13.87626 -13.54112 -13.45498 -13.28495 -13.10770 -13.04398 -12.91470 -12.80777 -12.50058 -12.40054 -12.19315 -12.07834 -12.05165 -11.84878 -11.26653 -11.17332 -10.54831 -10.28343 -9.95263 -9.63205 -8.92937 -8.47019 -5.98921 -0.27721 0.19313 0.36084 1.31120 1.46411 1.47686 1.60452 1.61457 1.88744 2.19145 2.33910 2.47849 2.71632 3.01138 3.15380 3.33111 3.52969 3.58939 3.91965 3.97609 4.06656 4.15108 4.16169 4.28312 4.30271 4.33593 4.47535 4.53069 4.59683 4.66398 4.78010 4.87058 4.99504 5.04185 5.18210 5.21032 5.28352 5.32477 5.35939 5.43307 5.45552 5.51892 5.69123 6.04114 6.14356 6.37868 6.95678 7.07160 7.27927 7.89174 8.57107 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.003722 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.776120 B = 7520.917609 C = 9131.069762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C 0.071 3.929 4 O -0.188 6.188 5 C 0.029 3.971 6 C -0.102 4.102 7 C -0.089 4.089 8 C -0.131 4.131 9 C -0.096 4.096 10 C -0.130 4.130 11 C -0.185 4.185 12 C 0.001 3.999 13 C -0.192 4.192 14 C 0.473 3.527 15 O -0.627 6.627 16 N -0.441 5.441 17 C -0.339 4.339 18 H 0.086 0.914 19 C 0.006 3.994 20 N -0.886 5.886 21 Si 0.991 3.009 22 H -0.268 1.268 23 H -0.261 1.261 24 H -0.287 1.287 25 C 0.220 3.780 26 C 0.254 3.746 27 N -0.498 5.498 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.162 0.838 34 H 0.174 0.826 35 H 0.144 0.856 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.277 0.723 40 H 0.126 0.874 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 -1.957 -19.697 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C 0.022 3.978 4 O -0.089 6.089 5 C -0.017 4.017 6 C -0.120 4.120 7 C -0.106 4.106 8 C -0.149 4.149 9 C -0.114 4.114 10 C -0.131 4.131 11 C -0.186 4.186 12 C -0.020 4.020 13 C -0.213 4.213 14 C 0.268 3.732 15 O -0.516 6.516 16 N -0.159 5.159 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.197 4.197 20 N -0.524 5.524 21 Si 0.814 3.186 22 H -0.192 1.192 23 H -0.185 1.185 24 H -0.214 1.214 25 C 0.094 3.906 26 C -0.064 4.064 27 N -0.178 5.178 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.179 0.821 34 H 0.191 0.809 35 H 0.162 0.838 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.087 0.913 40 H 0.143 0.857 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.707 -0.494 -19.596 19.615 hybrid contribution 0.133 -0.304 1.757 1.788 sum -0.574 -0.798 -17.839 17.866 Atomic orbital electron populations 1.21780 0.92598 1.03937 1.02202 1.20477 0.97376 0.84772 1.06032 1.23275 0.97322 0.95146 0.82092 1.83769 1.69138 1.22086 1.33938 1.19906 1.02529 0.86119 0.93137 1.20371 1.01548 0.89148 1.00971 1.21332 0.97663 0.97576 0.94038 1.21363 1.00369 0.98444 0.94722 1.20595 0.98873 0.92244 0.99699 1.19903 1.04429 0.94956 0.93773 1.19750 1.11509 0.94148 0.93235 1.21391 0.97519 0.93924 0.89165 1.21993 1.01107 1.05318 0.92847 1.17353 0.83366 0.84805 0.87681 1.90636 1.29152 1.50718 1.81084 1.43734 1.11392 1.51342 1.09385 1.19717 1.20774 1.22766 0.83361 0.89603 1.26038 0.96326 0.95031 1.02327 1.69921 1.30282 1.15064 1.37115 0.84915 0.78842 0.78218 0.76587 1.19247 1.18517 1.21367 1.19040 0.89532 0.79397 1.02658 1.29663 0.91909 0.95599 0.89181 1.80904 1.09131 1.14613 1.13185 0.93382 0.91953 0.89071 0.87117 0.87913 0.82067 0.80887 0.83849 0.87843 0.85522 0.85328 0.91270 0.85666 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.90 71.98 0.71 -1.74 16 2 C -0.05 -0.91 6.26 29.85 0.19 -0.72 16 3 C 0.07 1.81 6.57 25.25 0.17 1.98 16 4 O -0.19 -4.89 10.53 -4.92 -0.05 -4.94 16 5 C 0.03 0.78 7.39 22.93 0.17 0.95 16 6 C -0.10 -2.03 10.06 22.35 0.22 -1.80 16 7 C -0.09 -1.60 10.01 22.28 0.22 -1.37 16 8 C -0.13 -3.09 10.04 22.28 0.22 -2.86 16 9 C -0.10 -2.93 10.09 22.38 0.23 -2.70 16 10 C -0.13 -4.02 6.34 -20.08 -0.13 -4.14 16 11 C -0.19 -5.74 5.98 -19.04 -0.11 -5.86 16 12 C 0.00 0.05 9.12 23.78 0.22 0.26 16 13 C -0.19 -7.46 8.57 22.42 0.19 -7.26 16 14 C 0.47 22.77 7.33 85.03 0.62 23.39 16 15 O -0.63 -34.69 15.77 -4.73 -0.07 -34.76 16 16 N -0.44 -21.26 2.59 -655.69 -1.70 -22.95 16 17 C -0.34 -17.85 9.26 84.11 0.78 -17.07 16 18 H 0.09 4.86 7.43 -2.91 -0.02 4.84 16 19 C 0.01 0.30 4.84 84.95 0.41 0.71 16 20 N -0.89 -44.53 9.61 21.68 0.21 -44.32 16 21 Si 0.99 39.73 29.60 68.60 2.03 41.76 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 25 C 0.22 8.79 4.78 84.57 0.40 9.20 16 26 C 0.25 11.32 13.15 89.43 1.18 12.49 16 27 N -0.50 -23.74 18.54 20.02 0.37 -23.37 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 1.91 7.87 -2.39 -0.02 1.90 16 33 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.10 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.13 4.64 7.45 -2.91 -0.02 4.62 16 38 H 0.13 4.51 6.06 -2.91 -0.02 4.49 16 39 H 0.28 13.31 8.31 -92.72 -0.77 12.54 16 40 H 0.13 4.99 6.63 -2.39 -0.02 4.97 16 41 H 0.13 4.00 6.45 -2.39 -0.02 3.98 16 Total: -1.00 -70.78 362.64 7.55 -63.23 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 1.07 Total: 21.90 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 5.69 Total: 3.45 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -1.12 Total: -90.64 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.13 Total: -39.70 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -70.78 7.55 -63.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.135 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds