Wall clock time and date at job start Tue Mar 31 2020 14:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29429 * 124.80167 * 2 1 4 4 C 1.30951 * 117.36078 * 180.02562 * 3 2 1 5 5 C 1.50690 * 122.90479 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47576 * 270.00456 * 5 4 3 7 7 C 1.52993 * 109.47420 * 64.99707 * 6 5 4 8 8 C 1.53000 * 109.47461 * 185.00033 * 6 5 4 9 9 C 1.35664 * 114.19019 * 359.97438 * 4 3 2 10 10 C 1.46679 * 126.12780 * 179.97438 * 9 4 3 11 11 O 1.21689 * 120.00566 * 0.02562 * 10 9 4 12 12 N 1.34785 * 119.99876 * 179.97438 * 10 9 4 13 13 C 1.47576 * 134.49390 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.11846 * 155.36116 * 13 12 10 15 15 O 1.42894 * 113.74258 * 269.15648 * 14 13 12 16 16 C 1.50696 * 113.73834 * 137.95019 * 14 13 12 17 17 H 1.07999 * 120.00319 * 1.93267 * 16 14 13 18 18 C 1.37885 * 119.99717 * 181.92651 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47805 * 134.45494 * 359.87297 * 12 10 9 25 25 S 1.70955 * 124.80400 * 180.35185 * 2 1 3 26 26 H 1.09001 * 109.46834 * 90.00006 * 1 2 3 27 27 H 1.08997 * 109.47543 * 210.00005 * 1 2 3 28 28 H 1.08999 * 109.47086 * 330.00672 * 1 2 3 29 29 H 1.09002 * 109.47066 * 30.00480 * 5 4 3 30 30 H 1.09004 * 109.47144 * 149.99635 * 5 4 3 31 31 H 1.09007 * 109.46865 * 304.99809 * 6 5 4 32 32 H 1.09004 * 109.47253 * 300.00278 * 7 6 5 33 33 H 1.09007 * 109.47018 * 60.00196 * 7 6 5 34 34 H 1.09000 * 109.47864 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.47236 * 59.99810 * 8 6 5 36 36 H 1.09005 * 109.47638 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47046 * 299.99694 * 8 6 5 38 38 H 1.08999 * 113.76805 * 41.06190 * 13 12 10 39 39 H 1.09000 * 113.87378 * 269.67731 * 13 12 10 40 40 H 0.96701 * 113.99575 * 178.07128 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.09008 * 113.77106 * 90.37414 * 24 12 10 43 43 H 1.08997 * 113.84172 * 318.91386 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5442 0.8932 -0.0005 5 6 4.5198 2.0417 -0.0012 6 6 4.8493 2.4303 -1.4438 7 6 3.5906 2.9680 -2.1273 8 6 5.9323 3.5110 -1.4462 9 6 3.9352 -0.4059 -0.0004 10 6 5.3188 -0.8926 -0.0015 11 8 6.2426 -0.1004 -0.0020 12 7 5.5673 -2.2173 -0.0007 13 6 6.7925 -3.0399 -0.0018 14 6 5.9288 -4.1404 0.6406 15 8 5.9269 -4.1097 2.0693 16 6 6.1860 -5.5165 0.0828 17 1 6.9435 -5.6597 -0.6735 18 6 5.4542 -6.5928 0.5382 19 7 5.6790 -7.7938 0.0518 20 14 4.1437 -6.3449 1.8461 21 1 4.7507 -6.5053 3.1918 22 1 3.5711 -4.9804 1.7208 23 1 3.0674 -7.3519 1.6653 24 6 4.7211 -3.4292 0.0033 25 16 2.4828 -1.4037 -0.0086 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 4.0769 2.8948 0.5128 30 1 5.4335 1.7425 0.5124 31 1 5.2093 1.5539 -1.9829 32 1 2.8191 2.1980 -2.1256 33 1 3.2306 3.8444 -1.5882 34 1 3.8252 3.2444 -3.1553 35 1 6.8291 3.1279 -0.9592 36 1 6.1674 3.7875 -2.4741 37 1 5.5723 4.3873 -0.9072 38 1 7.5774 -2.6597 0.6520 39 1 7.1542 -3.2912 -0.9989 40 1 5.3622 -4.7809 2.4763 41 1 5.1645 -8.5510 0.3725 42 1 4.4717 -3.7943 -0.9930 43 1 3.8548 -3.3595 0.6612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193983679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:24 Heat of formation + Delta-G solvation = -5.041695 kcal Electronic energy + Delta-G solvation = -25959.269210 eV Core-core repulsion = 22325.857201 eV Total energy + Delta-G solvation = -3633.412009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41724 -39.60055 -37.56128 -36.02398 -34.54749 -32.62410 -32.40923 -29.73125 -28.68766 -27.40823 -27.06077 -25.77788 -25.24155 -23.11405 -21.37165 -20.17016 -19.73697 -18.29259 -18.03625 -17.47555 -16.48989 -16.30705 -15.62628 -15.52902 -14.83946 -14.73851 -14.40965 -13.90705 -13.80324 -13.69443 -13.53047 -13.21238 -12.94404 -12.78039 -12.61706 -12.56282 -12.37132 -12.22477 -12.21305 -11.75076 -11.54448 -11.30742 -11.03434 -10.86254 -10.83092 -10.68293 -10.54146 -10.21742 -9.90379 -9.74250 -9.41743 -9.31359 -9.09855 -8.80306 -8.69438 -8.12226 -6.49061 -4.55943 0.32231 1.24443 1.67597 2.51848 2.93273 2.94979 3.08270 3.20706 3.44457 3.94576 3.96413 4.54509 4.73552 4.80968 4.95738 4.98823 5.02852 5.05851 5.20408 5.26045 5.31838 5.46890 5.59765 5.65212 5.75575 5.79106 5.84094 5.90093 5.93272 5.96499 5.99717 6.10477 6.12654 6.24108 6.31875 6.37121 6.41446 6.45366 6.50504 7.11388 7.65973 7.95444 8.10227 8.40492 8.45412 8.55050 9.07922 10.62952 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.004333 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.580276 B = 6460.278412 C = 7665.715261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.037 3.963 3 N -0.475 5.475 4 C 0.145 3.855 5 C -0.049 4.049 6 C -0.082 4.082 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.280 4.280 10 C 0.610 3.390 11 O -0.538 6.538 12 N -0.630 5.630 13 C 0.133 3.867 14 C 0.200 3.800 15 O -0.552 6.552 16 C -0.538 4.538 17 H 0.093 0.907 18 C 0.082 3.918 19 N -0.873 5.873 20 Si 0.853 3.147 21 H -0.265 1.265 22 H -0.256 1.256 23 H -0.281 1.281 24 C 0.055 3.945 25 S 0.174 5.826 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.353 0.647 41 H 0.272 0.728 42 H 0.100 0.900 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 14.492 -1.534 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.238 4.238 3 N -0.190 5.190 4 C 0.007 3.993 5 C -0.089 4.089 6 C -0.101 4.101 7 C -0.201 4.201 8 C -0.199 4.199 9 C -0.404 4.404 10 C 0.398 3.602 11 O -0.418 6.418 12 N -0.363 5.363 13 C 0.011 3.989 14 C 0.158 3.842 15 O -0.363 6.363 16 C -0.575 4.575 17 H 0.111 0.889 18 C -0.123 4.123 19 N -0.509 5.509 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.181 1.181 23 H -0.207 1.207 24 C -0.068 4.068 25 S 0.432 5.568 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.205 0.795 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.360 14.762 -1.645 17.557 hybrid contribution -0.785 0.035 0.752 1.088 sum -10.146 14.798 -0.893 17.964 Atomic orbital electron populations 1.20464 0.85077 1.04284 1.03951 1.27513 1.02142 0.92511 1.01659 1.66109 1.04301 1.31411 1.17171 1.20536 0.89816 0.93224 0.95718 1.20541 0.96946 0.93213 0.98198 1.20941 0.95624 0.98747 0.94833 1.21850 0.97534 1.01111 0.99557 1.21777 0.98624 0.98070 1.01467 1.25521 0.98094 0.96895 1.19907 1.16276 0.85818 0.81066 0.77039 1.90734 1.44398 1.54020 1.52694 1.50056 1.12479 1.02962 1.70843 1.23305 0.88729 0.86130 1.00698 1.20509 0.90237 0.94451 0.78959 1.86475 1.70656 1.58738 1.20393 1.21208 1.22737 0.88873 1.24701 0.88908 1.24991 0.96387 0.95114 0.95842 1.69851 1.40031 0.99232 1.41749 0.87417 0.82559 0.79063 0.82860 1.19152 1.18072 1.20709 1.24885 0.97665 0.81953 1.02340 1.84362 0.96268 1.10196 1.65945 0.89418 0.89954 0.89256 0.90658 0.87675 0.91116 0.92707 0.92738 0.93302 0.92156 0.92840 0.92898 0.90205 0.88401 0.79529 0.91795 0.88236 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.46 36.01 0.38 -0.27 16 2 C 0.04 0.47 7.39 -13.29 -0.10 0.37 16 3 N -0.47 -6.96 9.64 -7.70 -0.07 -7.03 16 4 C 0.15 2.31 5.32 -83.89 -0.45 1.86 16 5 C -0.05 -0.72 4.50 -27.89 -0.13 -0.84 16 6 C -0.08 -1.09 2.91 -90.63 -0.26 -1.35 16 7 C -0.14 -1.71 8.97 37.15 0.33 -1.38 16 8 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 9 C -0.28 -4.85 6.46 -37.10 -0.24 -5.09 16 10 C 0.61 12.02 8.01 -12.85 -0.10 11.92 16 11 O -0.54 -11.29 15.00 5.20 0.08 -11.21 16 12 N -0.63 -12.58 3.61 -179.65 -0.65 -13.23 16 13 C 0.13 2.68 8.23 -2.97 -0.02 2.66 16 14 C 0.20 4.42 1.06 -90.84 -0.10 4.32 16 15 O -0.55 -12.68 13.35 -35.23 -0.47 -13.15 16 16 C -0.54 -13.44 9.19 -34.44 -0.32 -13.75 16 17 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 18 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.87 -23.79 13.96 55.43 0.77 -23.02 16 20 Si 0.85 18.18 24.31 -169.99 -4.13 14.05 16 21 H -0.27 -5.54 7.05 56.52 0.40 -5.14 16 22 H -0.26 -5.06 5.16 56.52 0.29 -4.77 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 C 0.06 1.09 5.83 -2.83 -0.02 1.07 16 25 S 0.17 2.52 19.95 -107.50 -2.15 0.38 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 1.71 6.01 -51.93 -0.31 1.40 16 31 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.05 0.73 6.75 -51.93 -0.35 0.37 16 33 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 40 H 0.35 7.71 3.57 45.56 0.16 7.87 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.10 1.87 8.09 -51.92 -0.42 1.45 16 43 H 0.07 1.37 5.18 -51.93 -0.27 1.10 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -29.10 355.75 -7.96 -37.06 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.93 Total: 10.55 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.78 Total: 0.25 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.05 Total: -43.28 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.39 Total: -24.36 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -4.13 Total: 14.05 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.15 Total: 0.38 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.10 -7.96 -37.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193983679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.018 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds