Wall clock time and date at job start Tue Mar 31 2020 14:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29429 * 124.80167 * 2 1 4 4 C 1.30951 * 117.36078 * 180.02562 * 3 2 1 5 5 C 1.50690 * 122.90479 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47576 * 270.00456 * 5 4 3 7 7 C 1.52993 * 109.47420 * 64.99707 * 6 5 4 8 8 C 1.53000 * 109.47461 * 185.00033 * 6 5 4 9 9 C 1.35664 * 114.19019 * 359.97438 * 4 3 2 10 10 C 1.46679 * 126.12780 * 179.97438 * 9 4 3 11 11 O 1.21689 * 120.00566 * 0.02562 * 10 9 4 12 12 N 1.34785 * 119.99876 * 179.97438 * 10 9 4 13 13 C 1.47576 * 134.49390 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.11846 * 155.36116 * 13 12 10 15 15 O 1.42894 * 113.74258 * 269.15648 * 14 13 12 16 16 C 1.50696 * 113.73834 * 137.95019 * 14 13 12 17 17 H 1.07999 * 120.00319 * 1.93267 * 16 14 13 18 18 C 1.37885 * 119.99717 * 181.92651 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47805 * 134.45494 * 359.87297 * 12 10 9 25 25 S 1.70955 * 124.80400 * 180.35185 * 2 1 3 26 26 H 1.09001 * 109.46834 * 90.00006 * 1 2 3 27 27 H 1.08997 * 109.47543 * 210.00005 * 1 2 3 28 28 H 1.08999 * 109.47086 * 330.00672 * 1 2 3 29 29 H 1.09002 * 109.47066 * 30.00480 * 5 4 3 30 30 H 1.09004 * 109.47144 * 149.99635 * 5 4 3 31 31 H 1.09007 * 109.46865 * 304.99809 * 6 5 4 32 32 H 1.09004 * 109.47253 * 300.00278 * 7 6 5 33 33 H 1.09007 * 109.47018 * 60.00196 * 7 6 5 34 34 H 1.09000 * 109.47864 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.47236 * 59.99810 * 8 6 5 36 36 H 1.09005 * 109.47638 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47046 * 299.99694 * 8 6 5 38 38 H 1.08999 * 113.76805 * 41.06190 * 13 12 10 39 39 H 1.09000 * 113.87378 * 269.67731 * 13 12 10 40 40 H 0.96701 * 113.99575 * 178.07128 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.09008 * 113.77106 * 90.37414 * 24 12 10 43 43 H 1.08997 * 113.84172 * 318.91386 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5442 0.8932 -0.0005 5 6 4.5198 2.0417 -0.0012 6 6 4.8493 2.4303 -1.4438 7 6 3.5906 2.9680 -2.1273 8 6 5.9323 3.5110 -1.4462 9 6 3.9352 -0.4059 -0.0004 10 6 5.3188 -0.8926 -0.0015 11 8 6.2426 -0.1004 -0.0020 12 7 5.5673 -2.2173 -0.0007 13 6 6.7925 -3.0399 -0.0018 14 6 5.9288 -4.1404 0.6406 15 8 5.9269 -4.1097 2.0693 16 6 6.1860 -5.5165 0.0828 17 1 6.9435 -5.6597 -0.6735 18 6 5.4542 -6.5928 0.5382 19 7 5.6790 -7.7938 0.0518 20 14 4.1437 -6.3449 1.8461 21 1 4.7507 -6.5053 3.1918 22 1 3.5711 -4.9804 1.7208 23 1 3.0674 -7.3519 1.6653 24 6 4.7211 -3.4292 0.0033 25 16 2.4828 -1.4037 -0.0086 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 4.0769 2.8948 0.5128 30 1 5.4335 1.7425 0.5124 31 1 5.2093 1.5539 -1.9829 32 1 2.8191 2.1980 -2.1256 33 1 3.2306 3.8444 -1.5882 34 1 3.8252 3.2444 -3.1553 35 1 6.8291 3.1279 -0.9592 36 1 6.1674 3.7875 -2.4741 37 1 5.5723 4.3873 -0.9072 38 1 7.5774 -2.6597 0.6520 39 1 7.1542 -3.2912 -0.9989 40 1 5.3622 -4.7809 2.4763 41 1 5.1645 -8.5510 0.3725 42 1 4.4717 -3.7943 -0.9930 43 1 3.8548 -3.3595 0.6612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193983679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:24 Heat of formation + Delta-G solvation = -25.233463 kcal Electronic energy + Delta-G solvation = -25960.144791 eV Core-core repulsion = 22325.857201 eV Total energy + Delta-G solvation = -3634.287590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74308 -41.06131 -39.12025 -37.07984 -36.27790 -34.57566 -33.42355 -31.20861 -29.78000 -28.76930 -28.01685 -27.35711 -26.96005 -24.11676 -22.84831 -21.46802 -21.07151 -19.81945 -19.34257 -19.16361 -18.15296 -17.78597 -17.04469 -16.84761 -16.11934 -15.89951 -15.61809 -15.49022 -15.30852 -14.92363 -14.80468 -14.64650 -14.38692 -14.15879 -13.94209 -13.85899 -13.35828 -13.29882 -13.14768 -13.03018 -12.73669 -12.70678 -12.56423 -12.47728 -11.98248 -11.90491 -11.87261 -11.61713 -11.45226 -11.21265 -10.99307 -10.70326 -10.59180 -10.52329 -9.95762 -9.61805 -8.44300 -6.57452 -0.84031 0.11297 0.53509 1.24090 1.26226 1.31621 1.38654 1.67998 2.02672 2.16267 2.73843 2.92769 3.14982 3.43681 3.74185 3.80490 3.85306 3.96315 4.09800 4.24881 4.27418 4.30875 4.52446 4.53553 4.59011 4.64326 4.67790 4.70781 4.73408 4.81058 4.83377 4.84079 4.96797 4.98412 5.07789 5.17189 5.24448 5.30239 5.40961 5.43323 6.02006 6.47839 6.51686 6.58374 6.65408 6.91468 7.10998 8.70922 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.004333 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.580276 B = 6460.278412 C = 7665.715261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.063 3.937 3 N -0.489 5.489 4 C 0.156 3.844 5 C -0.050 4.050 6 C -0.079 4.079 7 C -0.135 4.135 8 C -0.138 4.138 9 C -0.324 4.324 10 C 0.607 3.393 11 O -0.561 6.561 12 N -0.634 5.634 13 C 0.131 3.869 14 C 0.191 3.809 15 O -0.560 6.560 16 C -0.545 4.545 17 H 0.060 0.940 18 C 0.033 3.967 19 N -0.920 5.920 20 Si 0.909 3.091 21 H -0.256 1.256 22 H -0.231 1.231 23 H -0.276 1.276 24 C 0.070 3.930 25 S 0.177 5.823 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.357 0.643 41 H 0.275 0.725 42 H 0.107 0.893 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.730 16.411 -1.005 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.212 4.212 3 N -0.204 5.204 4 C 0.017 3.983 5 C -0.089 4.089 6 C -0.099 4.099 7 C -0.192 4.192 8 C -0.195 4.195 9 C -0.448 4.448 10 C 0.397 3.603 11 O -0.443 6.443 12 N -0.368 5.368 13 C 0.010 3.990 14 C 0.150 3.850 15 O -0.371 6.371 16 C -0.582 4.582 17 H 0.078 0.922 18 C -0.169 4.169 19 N -0.557 5.557 20 Si 0.733 3.267 21 H -0.182 1.182 22 H -0.154 1.154 23 H -0.202 1.202 24 C -0.053 4.053 25 S 0.435 5.565 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.210 0.790 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.467 16.689 -1.118 20.861 hybrid contribution 0.172 -0.510 0.536 0.760 sum -12.295 16.179 -0.582 20.329 Atomic orbital electron populations 1.20777 0.81475 1.05998 1.05820 1.28370 1.03865 0.91113 0.97816 1.66222 1.03628 1.31825 1.18774 1.20769 0.90650 0.93086 0.93801 1.20549 0.95952 0.93415 0.99003 1.20902 0.96919 0.98343 0.93701 1.21772 0.96189 1.00947 1.00318 1.21744 0.97428 0.97911 1.02413 1.25285 0.97768 0.98094 1.23649 1.16610 0.86906 0.80528 0.76221 1.90711 1.45609 1.54340 1.53635 1.50009 1.12016 1.03291 1.71453 1.23286 0.88937 0.85827 1.01000 1.20519 0.92444 0.93369 0.78664 1.86470 1.71120 1.58853 1.20658 1.21301 1.22006 0.90794 1.24143 0.92228 1.25770 0.98625 0.94485 0.97990 1.69986 1.41709 1.00319 1.43716 0.86475 0.79814 0.80330 0.80071 1.18178 1.15436 1.20242 1.24669 0.96872 0.81172 1.02630 1.84190 0.95203 1.10683 1.66386 0.87205 0.87779 0.87922 0.89146 0.89884 0.93901 0.94054 0.91519 0.92046 0.93510 0.91593 0.91171 0.90549 0.87528 0.79038 0.91585 0.87483 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.46 71.24 0.75 -0.24 16 2 C 0.06 1.42 7.39 88.46 0.65 2.07 16 3 N -0.49 -13.17 9.64 -178.29 -1.72 -14.89 16 4 C 0.16 4.80 5.32 42.09 0.22 5.02 16 5 C -0.05 -1.41 4.50 29.84 0.13 -1.28 16 6 C -0.08 -2.05 2.91 -10.80 -0.03 -2.08 16 7 C -0.13 -2.96 8.97 71.98 0.65 -2.31 16 8 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 9 C -0.32 -11.00 6.46 23.88 0.15 -10.85 16 10 C 0.61 24.13 8.01 86.45 0.69 24.82 16 11 O -0.56 -24.17 15.00 -4.31 -0.06 -24.23 16 12 N -0.63 -25.33 3.61 -844.32 -3.05 -28.38 16 13 C 0.13 5.40 8.23 86.49 0.71 6.12 16 14 C 0.19 8.44 1.06 -10.87 -0.01 8.43 16 15 O -0.56 -25.23 13.35 -148.98 -1.99 -27.22 16 16 C -0.54 -27.85 9.19 25.60 0.24 -27.62 16 17 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 18 C 0.03 1.70 5.47 84.66 0.46 2.16 16 19 N -0.92 -51.27 13.96 21.45 0.30 -50.97 16 20 Si 0.91 36.60 24.31 68.60 1.67 38.26 16 21 H -0.26 -9.94 7.05 99.48 0.70 -9.24 16 22 H -0.23 -8.27 5.16 99.48 0.51 -7.75 16 23 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 24 C 0.07 2.69 5.83 86.45 0.50 3.19 16 25 S 0.18 4.73 19.95 -56.49 -1.13 3.60 16 26 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 2.76 6.01 -2.38 -0.01 2.75 16 31 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.04 1.01 6.75 -2.39 -0.02 1.00 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.11 4.12 8.09 -2.39 -0.02 4.10 16 40 H 0.36 14.96 3.57 -74.06 -0.26 14.70 16 41 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 42 H 0.11 3.93 8.09 -2.38 -0.02 3.91 16 43 H 0.08 2.99 5.18 -2.39 -0.01 2.98 16 Total: -1.00 -64.47 355.75 0.37 -64.11 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.57 Total: 34.59 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.78 Total: 5.14 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -4.47 Total: -94.24 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -2.05 Total: -51.45 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 1.67 Total: 38.26 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.13 Total: 3.60 kcal Total: -64.47 0.37 -64.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193983679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.873 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds