Wall clock time and date at job start Tue Mar 31 2020 14:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 N 1.46901 * 109.47249 * 239.99380 * 2 1 3 5 5 C 1.46905 * 110.99615 * 60.00485 * 4 2 1 6 6 C 1.53001 * 109.46891 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47049 * 179.97438 * 6 5 4 8 8 S 1.81001 * 109.47128 * 180.02562 * 7 6 5 9 9 C 1.76199 * 99.99759 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00475 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99731 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00086 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99889 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47140 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47292 * 119.99954 * 13 11 9 16 16 H 1.48499 * 109.47098 * 239.99772 * 13 11 9 17 17 C 1.50708 * 109.46840 * 119.99687 * 2 1 3 18 18 C 1.38256 * 119.99862 * 129.03397 * 17 2 1 19 19 C 1.38206 * 120.00144 * 179.72794 * 18 17 2 20 20 C 1.38262 * 119.99880 * 0.27402 * 19 18 17 21 21 C 1.38212 * 119.99905 * 359.97438 * 20 19 18 22 22 C 1.38209 * 119.99990 * 309.22767 * 17 2 1 23 23 N 1.48020 * 120.00076 * 0.04124 * 22 17 2 24 24 O 1.21806 * 119.99625 * 161.62913 * 23 22 17 25 25 O 1.21799 * 119.99947 * 341.62335 * 23 22 17 26 26 H 1.08997 * 109.47313 * 270.40927 * 1 2 3 27 27 H 1.08996 * 109.47065 * 30.41492 * 1 2 3 28 28 H 1.09000 * 109.46746 * 150.40992 * 1 2 3 29 29 H 1.09002 * 109.46694 * 204.87639 * 3 2 1 30 30 H 1.08991 * 109.47020 * 324.87241 * 3 2 1 31 31 H 1.08998 * 109.47364 * 84.87535 * 3 2 1 32 32 H 1.00890 * 111.00667 * 296.04843 * 4 2 1 33 33 H 1.08996 * 109.46961 * 299.99535 * 5 4 2 34 34 H 1.08999 * 109.47048 * 59.99831 * 5 4 2 35 35 H 1.08996 * 109.47246 * 299.99738 * 6 5 4 36 36 H 1.08999 * 109.47105 * 60.00243 * 6 5 4 37 37 H 1.09002 * 109.47051 * 300.00554 * 7 6 5 38 38 H 1.09003 * 109.46715 * 59.99794 * 7 6 5 39 39 H 0.97001 * 120.00143 * 179.97438 * 12 11 9 40 40 H 1.08003 * 119.99700 * 0.02562 * 18 17 2 41 41 H 1.07999 * 120.00790 * 180.25972 * 19 18 17 42 42 H 1.08002 * 119.99977 * 179.97438 * 20 19 18 43 43 H 1.07998 * 120.00277 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 1.5487 -0.0265 -2.4211 6 6 2.0783 -0.7744 -3.6462 7 6 1.5873 -0.0810 -4.9187 8 16 2.2132 -0.9663 -6.3681 9 6 1.5168 0.0187 -7.6524 10 1 0.9095 0.8770 -7.4057 11 6 1.7479 -0.3091 -8.9812 12 7 2.4877 -1.3555 -9.2818 13 14 1.0091 0.7347 -10.3428 14 1 0.2239 1.8444 -9.7451 15 1 2.0977 1.2946 -11.1834 16 1 0.1178 -0.1056 -11.1823 17 6 2.0323 -0.7104 1.2306 18 6 2.9736 -1.7161 1.1124 19 6 3.4385 -2.3637 2.2413 20 6 2.9579 -2.0098 3.4885 21 6 2.0130 -1.0079 3.6062 22 6 1.5489 -0.3593 2.4769 23 7 0.5373 0.7139 2.6029 24 8 -0.1308 0.8048 3.6174 25 8 0.3730 1.5060 1.6924 26 1 -0.3634 0.0073 1.0276 27 1 -0.3633 0.8862 -0.5202 28 1 -0.3633 -0.8937 -0.5075 29 1 3.0401 1.4742 -0.4323 30 1 1.3687 2.0651 -0.5913 31 1 2.0745 1.8157 1.0235 32 1 1.7503 -1.6649 -1.1909 33 1 0.4589 -0.0267 -2.4379 34 1 1.9122 1.0010 -2.4378 35 1 3.1682 -0.7739 -3.6292 36 1 1.7152 -1.8020 -3.6296 37 1 0.4974 -0.0819 -4.9354 38 1 1.9501 0.9467 -4.9354 39 1 2.6489 -1.5848 -10.2104 40 1 3.3493 -1.9922 0.1382 41 1 4.1769 -3.1464 2.1495 42 1 3.3208 -2.5162 4.3707 43 1 1.6373 -0.7317 4.5803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292155607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:34 Heat of formation + Delta-G solvation = 46.335103 kcal Electronic energy + Delta-G solvation = -24910.126668 eV Core-core repulsion = 21278.942524 eV Total energy + Delta-G solvation = -3631.184144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.82183 -40.20246 -38.17717 -36.73541 -34.15275 -32.44500 -32.37785 -31.17851 -29.79379 -27.66740 -26.81942 -25.80012 -25.07528 -23.59996 -22.63495 -21.19775 -19.94703 -19.40796 -18.86251 -18.07196 -17.47953 -16.90210 -16.05380 -15.74332 -15.22723 -14.90513 -14.80423 -14.66079 -14.33485 -14.15003 -13.57563 -13.23121 -13.15094 -12.88010 -12.69544 -12.68520 -12.31373 -12.06881 -11.73233 -11.47927 -11.39987 -11.35933 -11.21200 -11.08259 -10.84255 -10.69653 -10.65177 -10.60860 -10.35501 -9.98966 -9.58692 -9.52683 -9.06713 -8.63332 -8.30406 -6.52990 -6.23174 -3.93160 -0.42003 0.54012 1.02047 1.16025 2.88039 3.21017 3.21944 3.30011 3.48943 3.73504 3.91249 4.15088 4.22555 4.29793 4.46033 4.61856 4.62946 4.80531 4.87678 5.13081 5.13588 5.26166 5.28757 5.35980 5.38838 5.48365 5.49797 5.59464 5.63826 5.73423 5.74926 5.77277 5.85093 5.93221 5.95704 6.06914 6.15925 6.30073 6.31542 6.57879 6.70506 6.89311 7.16827 7.43495 7.61043 8.36999 9.23534 10.85090 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.026203 B = 0.002234 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.308408 B =12528.907610 C =13364.234731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.146 3.854 3 C -0.127 4.127 4 N -0.677 5.677 5 C 0.061 3.939 6 C -0.095 4.095 7 C -0.112 4.112 8 S -0.134 6.134 9 C -0.515 4.515 10 H 0.073 0.927 11 C 0.070 3.930 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.004 4.004 18 C -0.104 4.104 19 C -0.068 4.068 20 C -0.125 4.125 21 C -0.059 4.059 22 C -0.041 4.041 23 N 0.024 4.976 24 O -0.181 6.181 25 O -0.129 6.129 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.340 0.660 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.266 0.734 40 H 0.162 0.838 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -1.324 27.383 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 C -0.184 4.184 4 N -0.308 5.308 5 C -0.069 4.069 6 C -0.134 4.134 7 C -0.261 4.261 8 S 0.094 5.906 9 C -0.663 4.663 10 H 0.091 0.909 11 C -0.139 4.139 12 N -0.506 5.506 13 Si 0.744 3.256 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.006 4.006 18 C -0.123 4.123 19 C -0.086 4.086 20 C -0.143 4.143 21 C -0.078 4.078 22 C -0.124 4.124 23 N 0.538 4.462 24 O -0.389 6.389 25 O -0.347 6.347 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.179 0.821 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.834 -2.539 27.141 27.406 hybrid contribution -2.471 1.659 -0.729 3.064 sum 0.363 -0.880 26.411 26.428 Atomic orbital electron populations 1.22979 0.95095 1.02655 1.02428 1.19880 0.92928 0.94876 0.86884 1.22075 1.01387 0.92054 1.02917 1.60797 1.63079 1.06025 1.00925 1.22084 0.97635 0.99136 0.88020 1.21246 1.01790 0.98855 0.91487 1.23212 1.02334 1.02242 0.98319 1.84606 1.68961 1.40904 0.96103 1.22733 1.36642 1.15100 0.91814 0.90907 1.25018 0.95096 0.95551 0.98185 1.70029 1.36352 1.25252 1.18948 0.86116 0.78846 0.79807 0.80784 1.19588 1.20555 1.20593 1.19919 0.93831 0.94481 0.92332 1.21375 0.95548 0.94385 1.00956 1.21718 0.97124 0.97643 0.92107 1.21221 0.97087 0.97154 0.98855 1.20992 0.95186 0.93895 0.97753 1.20894 0.98636 0.96454 0.96457 1.43559 1.01035 1.01562 1.00050 1.94537 1.44996 1.79329 1.20016 1.94569 1.71481 1.36968 1.31659 0.92877 0.90217 0.93161 0.91940 0.91183 0.91384 0.84156 0.94633 0.90394 0.90738 0.91931 0.92324 0.92042 0.92381 0.82092 0.83887 0.83750 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 6.26 37.16 0.23 -1.67 16 2 C 0.15 1.50 0.68 -132.75 -0.09 1.41 16 3 C -0.13 -1.36 6.45 37.16 0.24 -1.12 16 4 N -0.68 -7.09 4.81 -101.13 -0.49 -7.58 16 5 C 0.06 0.76 5.09 -3.82 -0.02 0.74 16 6 C -0.09 -1.46 5.48 -26.73 -0.15 -1.61 16 7 C -0.11 -2.21 5.67 37.16 0.21 -2.00 16 8 S -0.13 -3.48 21.44 -107.50 -2.30 -5.78 16 9 C -0.51 -14.75 9.50 30.94 0.29 -14.46 16 10 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 11 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 12 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 13 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.00 -0.04 4.72 -104.62 -0.49 -0.53 16 18 C -0.10 -0.77 9.12 -39.59 -0.36 -1.13 16 19 C -0.07 -0.36 10.05 -39.58 -0.40 -0.76 16 20 C -0.12 -0.63 10.05 -39.58 -0.40 -1.03 16 21 C -0.06 -0.43 9.58 -39.58 -0.38 -0.81 16 22 C -0.04 -0.40 6.04 -79.95 -0.48 -0.88 16 23 N 0.02 0.28 3.26 33.96 0.11 0.39 16 24 O -0.18 -2.27 18.58 -29.46 -0.55 -2.81 16 25 O -0.13 -1.59 10.75 -29.46 -0.32 -1.91 16 26 H 0.05 0.62 4.40 -51.98 -0.23 0.39 16 27 H 0.08 0.90 7.26 -51.93 -0.38 0.52 16 28 H 0.05 0.54 7.88 -51.93 -0.41 0.13 16 29 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.07 0.75 7.16 -51.93 -0.37 0.38 16 31 H 0.07 0.75 5.47 -51.93 -0.28 0.47 16 32 H 0.34 3.25 7.95 -39.30 -0.31 2.94 16 33 H 0.04 0.45 6.93 -51.93 -0.36 0.09 16 34 H 0.08 1.00 6.90 -51.93 -0.36 0.64 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16 38 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.16 1.13 6.71 -52.48 -0.35 0.78 16 41 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 43 H 0.15 0.89 7.73 -52.49 -0.41 0.48 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -32.15 358.39 -10.28 -42.43 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.96 Total: 0.50 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -1.89 Total: -21.94 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.36 Total: -32.42 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.86 Total: -4.72 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.78 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.15 -10.28 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292155607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.761 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds