Wall clock time and date at job start Tue Mar 31 2020 13:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53034 * 109.46433 * 2 1 4 4 C 1.53192 * 109.31355 * 178.62541 * 3 2 1 5 5 N 1.46927 * 108.77703 * 54.63721 * 4 3 2 6 6 S 1.65594 * 120.63408 * 126.36711 * 5 4 3 7 7 O 1.42099 * 106.40025 * 336.46139 * 6 5 4 8 8 O 1.42105 * 106.40337 * 203.54086 * 6 5 4 9 9 N 1.65599 * 107.21735 * 89.99875 * 6 5 4 10 10 C 1.38736 * 119.99876 * 57.78991 * 9 6 5 11 11 C 1.38746 * 120.29332 * 35.53039 * 10 9 6 12 12 C 1.38174 * 120.02338 * 179.75089 * 11 10 9 13 13 C 1.38904 * 120.62065 * 0.55187 * 12 11 10 14 14 C 1.36438 * 120.59939 * 359.70392 * 13 12 11 15 15 C 1.40732 * 119.95645 * 0.02562 * 14 13 12 16 16 C 1.41047 * 120.31202 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99957 * 206.65551 * 16 15 14 18 18 C 1.39927 * 119.99437 * 26.65126 * 16 15 14 19 19 N 1.30873 * 120.00276 * 12.15736 * 18 16 15 20 20 Si 1.86800 * 119.99488 * 192.15045 * 18 16 15 21 21 H 1.48499 * 109.47256 * 90.00664 * 20 18 16 22 22 H 1.48503 * 109.47132 * 210.00657 * 20 18 16 23 23 H 1.48498 * 109.47325 * 330.00063 * 20 18 16 24 24 C 1.46930 * 118.73503 * 306.64426 * 5 4 3 25 25 C 1.52755 * 109.01065 * 53.30812 * 24 5 4 26 26 H 1.09000 * 109.46786 * 60.00221 * 1 2 3 27 27 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47087 * 300.00117 * 1 2 3 29 29 H 1.09006 * 109.45830 * 119.97666 * 2 1 3 30 30 H 1.09000 * 109.49688 * 58.67544 * 3 2 1 31 31 H 1.09000 * 109.52394 * 298.59401 * 3 2 1 32 32 H 1.08998 * 109.58542 * 294.84821 * 4 3 2 33 33 H 1.09004 * 109.70483 * 174.49292 * 4 3 2 34 34 H 0.97003 * 119.99896 * 237.78175 * 9 6 5 35 35 H 1.08000 * 119.99171 * 0.02562 * 11 10 9 36 36 H 1.07993 * 119.68751 * 180.27514 * 12 11 10 37 37 H 1.07998 * 119.69286 * 179.72232 * 13 12 11 38 38 H 1.08004 * 120.02570 * 179.97438 * 14 13 12 39 39 H 0.97000 * 120.00144 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.58694 * 173.14568 * 24 5 4 41 41 H 1.09007 * 109.58590 * 293.56882 * 24 5 4 42 42 H 1.09005 * 109.56870 * 185.55295 * 25 24 5 43 43 H 1.09004 * 109.36282 * 65.49878 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4429 0.0000 4 6 3.5715 1.4390 0.0347 5 7 4.0678 0.6237 -1.0823 6 16 5.1654 1.2429 -2.1565 7 8 5.0238 2.6558 -2.1053 8 8 5.0238 0.4904 -3.3536 9 7 6.6747 0.9025 -1.5660 10 6 7.0433 -0.4123 -1.3207 11 6 6.5953 -1.4310 -2.1492 12 6 6.9701 -2.7379 -1.9028 13 6 7.7859 -3.0482 -0.8222 14 6 8.2368 -2.0671 0.0119 15 6 7.8749 -0.7269 -0.2194 16 6 8.3372 0.2934 0.6378 17 1 7.7660 1.2028 0.7520 18 6 9.5359 0.1271 1.3402 19 7 10.3451 -0.8539 1.0308 20 14 9.9812 1.3056 2.7195 21 1 9.4456 0.7888 4.0045 22 1 11.4586 1.4246 2.8112 23 1 9.3937 2.6403 2.4393 24 6 3.5669 -0.7495 -1.2317 25 6 2.0396 -0.7230 -1.2490 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8931 -0.5135 0.8903 30 1 1.6575 1.9639 0.8777 31 1 1.6978 1.9502 -0.9020 32 1 3.9145 1.0140 0.9780 33 1 3.9439 2.4587 -0.0636 34 1 7.3010 1.6225 -1.3918 35 1 5.9570 -1.2019 -2.9898 36 1 6.6218 -3.5260 -2.5538 37 1 8.0659 -4.0753 -0.6409 38 1 8.8703 -2.3188 0.8496 39 1 11.1762 -0.9689 1.5176 40 1 3.9342 -1.1728 -2.1666 41 1 3.9095 -1.3567 -0.3937 42 1 1.6569 -1.7436 -1.2602 43 1 1.6974 -0.1958 -2.1395 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340976885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:36 Heat of formation + Delta-G solvation = -71.038100 kcal Electronic energy + Delta-G solvation = -26770.757950 eV Core-core repulsion = 23134.484122 eV Total energy + Delta-G solvation = -3636.273828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.63121 -38.10188 -36.81801 -35.44650 -34.00852 -33.66069 -33.63249 -31.00371 -29.67126 -28.00347 -27.70603 -25.23049 -23.27095 -22.62900 -21.40073 -20.74671 -20.19291 -18.69380 -17.70015 -17.30725 -16.86844 -16.42304 -15.46009 -15.08331 -14.64776 -14.37945 -14.27398 -14.19617 -14.05277 -13.66881 -13.34844 -12.84008 -12.78956 -12.49921 -12.28913 -12.11400 -11.89198 -11.68626 -11.65478 -11.58158 -11.56259 -11.31091 -11.19722 -11.08641 -10.94440 -10.81801 -10.54653 -10.33428 -10.30060 -10.05078 -9.70129 -9.34316 -9.27674 -8.80720 -7.50866 -7.14546 -6.77344 -4.45988 1.03001 2.68864 2.89032 3.01482 3.04000 3.14265 3.28667 3.84564 3.96864 4.54538 4.68832 4.74462 4.78710 4.87653 5.21449 5.28512 5.48072 5.51643 5.53004 5.59123 5.61975 5.78014 5.81897 5.89883 6.00381 6.08396 6.11923 6.15906 6.17624 6.26851 6.39228 6.44908 6.47656 6.75118 6.81868 6.96502 7.08490 7.16625 7.41093 7.57152 7.88939 7.99081 8.07693 8.15780 8.53018 8.74852 8.85444 10.09854 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.004896 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.351357 B = 5717.524804 C = 6159.190106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.125 4.125 4 C 0.120 3.880 5 N -0.998 5.998 6 S 2.781 3.219 7 O -0.995 6.995 8 O -0.980 6.980 9 N -1.036 6.036 10 C 0.029 3.971 11 C -0.141 4.141 12 C -0.212 4.212 13 C -0.117 4.117 14 C -0.142 4.142 15 C 0.104 3.896 16 C -0.457 4.457 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.794 5.794 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C 0.121 3.879 25 C -0.126 4.126 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.416 0.584 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.281 0.719 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.271 0.943 1.230 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.164 4.164 4 C -0.005 4.005 5 N -0.837 5.837 6 S 2.792 3.208 7 O -0.979 6.979 8 O -0.964 6.964 9 N -0.789 5.789 10 C -0.068 4.068 11 C -0.163 4.163 12 C -0.232 4.232 13 C -0.136 4.136 14 C -0.163 4.163 15 C 0.098 3.902 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.420 5.420 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.004 4.004 25 C -0.165 4.165 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.253 0.747 35 H 0.143 0.857 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.379 1.270 0.410 12.451 hybrid contribution 0.830 0.556 1.127 1.506 sum -11.549 1.827 1.538 11.794 Atomic orbital electron populations 1.21827 0.95396 1.01529 1.01537 1.21095 0.95175 0.96085 0.98692 1.21920 0.95405 0.96719 1.02329 1.21376 0.94188 0.95382 0.89599 1.57910 1.58696 1.22809 1.44309 1.02158 0.72494 0.72215 0.73932 1.93544 1.86157 1.30802 1.87416 1.93529 1.86140 1.72477 1.44220 1.52728 1.30572 1.13235 1.82326 1.17273 1.10353 0.81239 0.97930 1.21181 1.03232 0.93253 0.98593 1.20225 1.06429 0.94918 1.01631 1.20502 0.98886 0.97720 0.96536 1.21069 1.02647 0.91683 1.00867 1.17504 0.90920 0.93013 0.88718 1.19386 1.04901 1.02877 1.21596 0.90438 1.25897 0.95718 0.95781 0.96930 1.69805 1.08932 1.27900 1.35364 0.86285 0.78128 0.81074 0.81112 1.19320 1.20272 1.18595 1.21391 0.93698 0.81909 1.03409 1.21880 0.95779 1.00741 0.98131 0.92859 0.92767 0.92849 0.90873 0.91019 0.91653 0.91248 0.89296 0.74744 0.85708 0.88956 0.89334 0.85800 0.90801 0.88801 0.91135 0.90914 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.09 -0.97 2.68 -90.58 -0.24 -1.21 16 3 C -0.12 -1.39 5.36 -26.61 -0.14 -1.54 16 4 C 0.12 1.64 6.48 -3.71 -0.02 1.62 16 5 N -1.00 -15.74 3.33 -113.76 -0.38 -16.12 16 6 S 2.78 51.85 5.85 -107.50 -0.63 51.22 16 7 O -1.00 -19.84 16.73 -57.17 -0.96 -20.79 16 8 O -0.98 -20.03 13.89 -57.17 -0.79 -20.82 16 9 N -1.04 -20.97 5.38 32.72 0.18 -20.80 16 10 C 0.03 0.65 6.40 -83.29 -0.53 0.11 16 11 C -0.14 -3.07 8.01 -39.42 -0.32 -3.39 16 12 C -0.21 -4.50 10.04 -39.36 -0.39 -4.89 16 13 C -0.12 -2.58 9.96 -39.98 -0.40 -2.98 16 14 C -0.14 -3.45 8.62 -39.29 -0.34 -3.79 16 15 C 0.10 2.55 5.58 -106.63 -0.60 1.96 16 16 C -0.46 -11.12 8.41 -37.89 -0.32 -11.44 16 17 H 0.08 1.80 7.37 -52.49 -0.39 1.41 16 18 C 0.07 1.75 5.24 -17.33 -0.09 1.66 16 19 N -0.79 -19.39 10.77 55.55 0.60 -18.79 16 20 Si 0.91 17.80 29.58 -169.99 -5.03 12.77 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 C 0.12 1.76 5.82 -3.93 -0.02 1.74 16 25 C -0.13 -1.47 5.34 -26.83 -0.14 -1.62 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.24 6.92 -51.93 -0.36 0.88 16 34 H 0.42 8.14 8.14 -34.47 -0.28 7.86 16 35 H 0.13 2.66 4.76 -52.49 -0.25 2.41 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.12 3.11 6.10 -52.48 -0.32 2.79 16 39 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 40 H 0.09 1.47 5.75 -51.93 -0.30 1.17 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -28.31 348.85 -11.08 -39.39 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -6.10 Total: 13.38 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -3.22 Total: -24.69 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.40 Total: -55.71 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.75 Total: -41.62 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 51.85 SS G_CDS: -0.63 Total: 51.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.31 -11.08 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340976885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.652 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds