Wall clock time and date at job start Tue Mar 31 2020 13:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53034 * 109.46433 * 2 1 4 4 C 1.53192 * 109.31355 * 178.62541 * 3 2 1 5 5 N 1.46927 * 108.77703 * 54.63721 * 4 3 2 6 6 S 1.65594 * 120.63408 * 126.36711 * 5 4 3 7 7 O 1.42099 * 106.40025 * 336.46139 * 6 5 4 8 8 O 1.42105 * 106.40337 * 203.54086 * 6 5 4 9 9 N 1.65599 * 107.21735 * 89.99875 * 6 5 4 10 10 C 1.38736 * 119.99876 * 57.78991 * 9 6 5 11 11 C 1.38746 * 120.29332 * 35.53039 * 10 9 6 12 12 C 1.38174 * 120.02338 * 179.75089 * 11 10 9 13 13 C 1.38904 * 120.62065 * 0.55187 * 12 11 10 14 14 C 1.36438 * 120.59939 * 359.70392 * 13 12 11 15 15 C 1.40732 * 119.95645 * 0.02562 * 14 13 12 16 16 C 1.41047 * 120.31202 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99957 * 206.65551 * 16 15 14 18 18 C 1.39927 * 119.99437 * 26.65126 * 16 15 14 19 19 N 1.30873 * 120.00276 * 12.15736 * 18 16 15 20 20 Si 1.86800 * 119.99488 * 192.15045 * 18 16 15 21 21 H 1.48499 * 109.47256 * 90.00664 * 20 18 16 22 22 H 1.48503 * 109.47132 * 210.00657 * 20 18 16 23 23 H 1.48498 * 109.47325 * 330.00063 * 20 18 16 24 24 C 1.46930 * 118.73503 * 306.64426 * 5 4 3 25 25 C 1.52755 * 109.01065 * 53.30812 * 24 5 4 26 26 H 1.09000 * 109.46786 * 60.00221 * 1 2 3 27 27 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47087 * 300.00117 * 1 2 3 29 29 H 1.09006 * 109.45830 * 119.97666 * 2 1 3 30 30 H 1.09000 * 109.49688 * 58.67544 * 3 2 1 31 31 H 1.09000 * 109.52394 * 298.59401 * 3 2 1 32 32 H 1.08998 * 109.58542 * 294.84821 * 4 3 2 33 33 H 1.09004 * 109.70483 * 174.49292 * 4 3 2 34 34 H 0.97003 * 119.99896 * 237.78175 * 9 6 5 35 35 H 1.08000 * 119.99171 * 0.02562 * 11 10 9 36 36 H 1.07993 * 119.68751 * 180.27514 * 12 11 10 37 37 H 1.07998 * 119.69286 * 179.72232 * 13 12 11 38 38 H 1.08004 * 120.02570 * 179.97438 * 14 13 12 39 39 H 0.97000 * 120.00144 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.58694 * 173.14568 * 24 5 4 41 41 H 1.09007 * 109.58590 * 293.56882 * 24 5 4 42 42 H 1.09005 * 109.56870 * 185.55295 * 25 24 5 43 43 H 1.09004 * 109.36282 * 65.49878 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4429 0.0000 4 6 3.5715 1.4390 0.0347 5 7 4.0678 0.6237 -1.0823 6 16 5.1654 1.2429 -2.1565 7 8 5.0238 2.6558 -2.1053 8 8 5.0238 0.4904 -3.3536 9 7 6.6747 0.9025 -1.5660 10 6 7.0433 -0.4123 -1.3207 11 6 6.5953 -1.4310 -2.1492 12 6 6.9701 -2.7379 -1.9028 13 6 7.7859 -3.0482 -0.8222 14 6 8.2368 -2.0671 0.0119 15 6 7.8749 -0.7269 -0.2194 16 6 8.3372 0.2934 0.6378 17 1 7.7660 1.2028 0.7520 18 6 9.5359 0.1271 1.3402 19 7 10.3451 -0.8539 1.0308 20 14 9.9812 1.3056 2.7195 21 1 9.4456 0.7888 4.0045 22 1 11.4586 1.4246 2.8112 23 1 9.3937 2.6403 2.4393 24 6 3.5669 -0.7495 -1.2317 25 6 2.0396 -0.7230 -1.2490 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8931 -0.5135 0.8903 30 1 1.6575 1.9639 0.8777 31 1 1.6978 1.9502 -0.9020 32 1 3.9145 1.0140 0.9780 33 1 3.9439 2.4587 -0.0636 34 1 7.3010 1.6225 -1.3918 35 1 5.9570 -1.2019 -2.9898 36 1 6.6218 -3.5260 -2.5538 37 1 8.0659 -4.0753 -0.6409 38 1 8.8703 -2.3188 0.8496 39 1 11.1762 -0.9689 1.5176 40 1 3.9342 -1.1728 -2.1666 41 1 3.9095 -1.3567 -0.3937 42 1 1.6569 -1.7436 -1.2602 43 1 1.6974 -0.1958 -2.1395 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340976885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:35 Heat of formation + Delta-G solvation = -87.353681 kcal Electronic energy + Delta-G solvation = -26771.465447 eV Core-core repulsion = 23134.484122 eV Total energy + Delta-G solvation = -3636.981325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.89684 -39.60215 -38.40969 -37.03534 -35.71348 -35.37589 -34.68431 -32.05550 -31.45008 -29.73676 -28.61802 -27.01817 -24.31215 -23.65827 -23.15057 -22.47346 -21.22383 -20.10594 -19.34740 -18.77480 -18.49916 -18.05473 -16.96685 -16.68275 -16.04341 -15.58122 -15.51012 -15.32649 -15.12142 -15.03056 -14.70623 -14.49681 -14.38658 -13.95337 -13.75646 -13.32451 -13.26465 -13.18183 -13.10384 -12.96160 -12.87391 -12.68113 -12.65609 -12.59575 -12.14681 -12.10991 -11.82280 -11.70427 -11.45430 -11.25395 -11.24135 -11.07952 -10.98743 -10.02306 -9.31017 -8.89783 -8.52144 -6.29183 -0.46620 0.98245 1.10359 1.40777 1.51354 1.53764 1.85283 2.21315 2.45373 2.77914 3.32326 3.66104 3.74575 3.88884 3.91041 4.22803 4.25012 4.44476 4.48188 4.55177 4.60555 4.66256 4.77196 4.79006 4.87191 4.92015 4.95280 5.04353 5.06215 5.15596 5.18014 5.25973 5.29608 5.32913 5.37654 5.46290 5.58062 5.65023 5.69238 5.81906 6.13206 6.21864 6.32695 6.38156 6.73900 6.94565 7.06080 8.36661 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.004896 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.351357 B = 5717.524804 C = 6159.190106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.121 4.121 4 C 0.111 3.889 5 N -0.994 5.994 6 S 2.796 3.204 7 O -1.007 7.007 8 O -0.999 6.999 9 N -1.042 6.042 10 C 0.031 3.969 11 C -0.148 4.148 12 C -0.206 4.206 13 C -0.120 4.120 14 C -0.164 4.164 15 C 0.076 3.924 16 C -0.483 4.483 17 H 0.079 0.921 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.260 1.260 24 C 0.117 3.883 25 C -0.122 4.122 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.416 0.584 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.961 0.924 1.820 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.160 4.160 4 C -0.014 4.014 5 N -0.836 5.836 6 S 2.807 3.193 7 O -0.991 6.991 8 O -0.982 6.982 9 N -0.793 5.793 10 C -0.065 4.065 11 C -0.169 4.169 12 C -0.226 4.226 13 C -0.139 4.139 14 C -0.185 4.185 15 C 0.071 3.929 16 C -0.513 4.513 17 H 0.097 0.903 18 C -0.179 4.179 19 N -0.453 5.453 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.183 1.183 24 C -0.008 4.008 25 C -0.161 4.161 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.252 0.748 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.064 1.243 0.991 14.154 hybrid contribution 1.279 0.519 0.867 1.630 sum -12.785 1.762 1.858 13.039 Atomic orbital electron populations 1.21777 0.93643 1.02281 1.02092 1.21102 0.96566 0.95288 0.97990 1.21933 0.93166 0.97619 1.03275 1.21622 0.96197 0.94697 0.88848 1.57738 1.57662 1.23671 1.44510 1.01505 0.72240 0.71765 0.73779 1.93525 1.86284 1.31614 1.87718 1.93492 1.86311 1.72756 1.45645 1.52834 1.31703 1.12542 1.82218 1.17357 1.09591 0.82240 0.97358 1.21343 1.03417 0.93524 0.98658 1.20570 1.05260 0.95452 1.01347 1.20742 0.98518 0.98449 0.96217 1.21068 1.03612 0.92390 1.01393 1.17792 0.91996 0.93437 0.89713 1.19583 1.05727 1.03173 1.22832 0.90321 1.26643 0.95290 0.97242 0.98677 1.69867 1.09474 1.29458 1.36493 0.85284 0.77857 0.78943 0.78166 1.18791 1.19821 1.18342 1.21510 0.95869 0.80870 1.02559 1.21884 0.93312 1.02171 0.98774 0.92805 0.91961 0.91822 0.90764 0.88715 0.91974 0.90817 0.89873 0.74801 0.85151 0.86061 0.87044 0.87355 0.90332 0.90080 0.91491 0.88998 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.19 71.98 0.66 -1.37 16 2 C -0.09 -1.69 2.68 -10.77 -0.03 -1.72 16 3 C -0.12 -2.44 5.36 30.67 0.16 -2.28 16 4 C 0.11 2.92 6.48 86.36 0.56 3.48 16 5 N -0.99 -30.76 3.33 -513.83 -1.71 -32.48 16 6 S 2.80 104.10 5.85 -56.49 -0.33 103.77 16 7 O -1.01 -40.00 16.73 -128.00 -2.14 -42.14 16 8 O -1.00 -40.60 13.89 -128.00 -1.78 -42.38 16 9 N -1.04 -42.72 5.38 -50.39 -0.27 -42.99 16 10 C 0.03 1.42 6.40 38.99 0.25 1.67 16 11 C -0.15 -6.38 8.01 22.38 0.18 -6.20 16 12 C -0.21 -8.49 10.04 22.41 0.22 -8.27 16 13 C -0.12 -5.22 9.96 22.01 0.22 -5.00 16 14 C -0.16 -8.10 8.62 22.46 0.19 -7.90 16 15 C 0.08 3.80 5.58 -21.17 -0.12 3.69 16 16 C -0.48 -23.97 8.41 23.37 0.20 -23.77 16 17 H 0.08 3.73 7.37 -2.91 -0.02 3.71 16 18 C 0.04 1.72 5.24 85.24 0.45 2.16 16 19 N -0.83 -41.18 10.77 21.83 0.24 -40.94 16 20 Si 0.98 36.65 29.58 68.60 2.03 38.68 16 21 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 24 C 0.12 3.29 5.82 86.22 0.50 3.79 16 25 C -0.12 -2.61 5.34 30.53 0.16 -2.45 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 2.27 6.92 -2.39 -0.02 2.25 16 34 H 0.42 16.68 8.14 -96.74 -0.79 15.89 16 35 H 0.13 5.47 4.76 -2.91 -0.01 5.46 16 36 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.11 5.62 6.10 -2.91 -0.02 5.60 16 39 H 0.29 13.02 8.30 -92.71 -0.77 12.26 16 40 H 0.08 2.48 5.75 -2.39 -0.01 2.47 16 41 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -60.31 348.85 -0.12 -60.43 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: 0.24 Total: 42.23 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 3.61 Total: -44.17 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -1.75 Total: -116.41 kcal Atomic # 8 Polarization: -80.60 SS G_CDS: -3.92 Total: -84.52 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 16 Polarization: 104.10 SS G_CDS: -0.33 Total: 103.77 kcal Total: -60.31 -0.12 -60.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340976885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.928 kcal (2) G-P(sol) polarization free energy of solvation -60.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds