Wall clock time and date at job start Tue Mar 31 2020 14:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30940 * 122.90136 * 2 1 4 4 C 1.29435 * 117.36341 * 180.02562 * 3 2 1 5 5 C 1.50690 * 124.80520 * 180.02562 * 4 3 2 6 6 H 1.09004 * 110.33031 * 197.22565 * 5 4 3 7 7 C 1.54479 * 110.37764 * 74.97235 * 5 4 3 8 8 C 1.54512 * 104.06604 * 217.19017 * 7 5 4 9 9 C 1.54485 * 104.05895 * 359.97438 * 8 7 5 10 10 O 1.44427 * 104.80580 * 23.97998 * 9 8 7 11 11 S 1.70958 * 110.38784 * 359.97438 * 4 3 2 12 12 C 1.35659 * 122.90343 * 179.70106 * 2 1 3 13 13 C 1.46684 * 126.13371 * 359.97438 * 12 2 1 14 14 O 1.21690 * 119.99507 * 0.02562 * 13 12 2 15 15 N 1.34769 * 120.00291 * 179.97438 * 13 12 2 16 16 C 1.46503 * 120.00068 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47300 * 180.02562 * 16 15 13 18 18 C 1.52995 * 109.47484 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47171 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00006 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99643 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99572 * 179.97438 * 21 19 18 23 23 Si 1.86790 * 120.00197 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47278 * 90.00018 * 23 21 19 25 25 H 1.48507 * 109.47226 * 210.00166 * 23 21 19 26 26 H 1.48506 * 109.47180 * 330.00130 * 23 21 19 27 27 H 1.09001 * 109.46953 * 90.02784 * 1 2 3 28 28 H 1.09000 * 109.47318 * 210.02382 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.03012 * 1 2 3 30 30 H 1.09003 * 110.50871 * 335.83415 * 7 5 4 31 31 H 1.09004 * 110.51329 * 98.40445 * 7 5 4 32 32 H 1.09001 * 110.51141 * 118.64014 * 8 7 5 33 33 H 1.08991 * 110.51159 * 241.35461 * 8 7 5 34 34 H 1.08997 * 110.37189 * 142.81300 * 9 8 7 35 35 H 1.08999 * 110.37065 * 265.03441 * 9 8 7 36 36 H 0.97002 * 120.00142 * 0.02562 * 15 13 12 37 37 H 1.09001 * 109.46627 * 299.99667 * 16 15 13 38 38 H 1.08995 * 109.47550 * 59.99828 * 16 15 13 39 39 H 1.08999 * 109.46828 * 300.00227 * 17 16 15 40 40 H 1.09003 * 109.47076 * 59.99591 * 17 16 15 41 41 H 1.08998 * 109.46849 * 300.00168 * 18 17 16 42 42 H 1.09002 * 109.46736 * 59.99591 * 18 17 16 43 43 H 0.97003 * 119.99578 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9745 -0.0005 5 6 4.4821 2.1230 0.0000 6 1 5.4713 1.7798 -0.3033 7 6 4.5447 2.7751 1.3990 8 6 4.6995 4.2838 1.1035 9 6 4.7129 4.3646 -0.4392 10 8 4.0225 3.1740 -0.8771 11 16 3.9448 -0.6780 -0.0004 12 6 2.2440 -1.1390 0.0059 13 6 1.7192 -2.5087 0.0136 14 8 0.5174 -2.6997 0.0146 15 7 2.5680 -3.5555 0.0185 16 6 2.0438 -4.9235 0.0256 17 6 3.2083 -5.9159 0.0307 18 6 2.6609 -7.3446 0.0388 19 6 3.8079 -8.3220 0.0432 20 1 4.8255 -7.9603 0.0409 21 6 3.5581 -9.6780 0.0501 22 7 4.5591 -10.5310 0.0534 23 14 1.7980 -10.3034 0.0547 24 1 1.3303 -10.4761 -1.3441 25 1 1.7382 -11.6083 0.7613 26 1 0.9262 -9.3232 0.7507 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 3.6232 2.5864 1.9498 31 1 5.4044 2.4026 1.9559 32 1 3.8545 4.8409 1.5082 33 1 5.6371 4.6589 1.5134 34 1 4.1841 5.2558 -0.7770 35 1 5.7378 4.3691 -0.8100 36 1 3.5260 -3.4032 0.0173 37 1 1.4344 -5.0744 0.9167 38 1 1.4336 -5.0835 -0.8632 39 1 3.8181 -5.7651 -0.8601 40 1 3.8182 -5.7559 0.9198 41 1 2.0514 -7.4951 0.9298 42 1 2.0508 -7.5049 -0.8502 43 1 4.3834 -11.4849 0.0586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341589371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:48 Heat of formation + Delta-G solvation = -51.575636 kcal Electronic energy + Delta-G solvation = -23977.273352 eV Core-core repulsion = 20341.843479 eV Total energy + Delta-G solvation = -3635.429872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76049 -39.83088 -38.93898 -35.65562 -33.41426 -32.96145 -32.41952 -31.57200 -29.73877 -28.87789 -26.87705 -25.36143 -23.33570 -22.59583 -21.67428 -21.46399 -20.64219 -19.37526 -18.43948 -17.28157 -16.90607 -16.64407 -16.39301 -15.81509 -15.63191 -15.25494 -14.99194 -14.40892 -14.26769 -14.07959 -13.89557 -13.73181 -13.55606 -12.90809 -12.75881 -12.56757 -12.29489 -12.12084 -12.03419 -11.95959 -11.84467 -11.59600 -11.23101 -11.13970 -10.93055 -10.38949 -10.33261 -10.13849 -10.00083 -9.81984 -9.79252 -9.65490 -9.26098 -9.14142 -8.91539 -8.57883 -6.08664 -4.07575 -0.08950 0.77436 1.22363 2.17074 3.04627 3.09231 3.29613 3.36053 3.37403 3.41142 3.58990 4.10053 4.21240 4.34396 4.42233 4.52521 4.66622 4.68433 4.79996 4.88569 5.05409 5.19601 5.25286 5.30078 5.44690 5.47334 5.51776 5.52830 5.57886 5.58641 5.70161 5.94137 6.10140 6.22637 6.27275 6.38014 6.59171 6.72600 7.18440 7.31527 7.32044 7.45417 7.73114 8.08431 8.47530 8.94962 9.53380 11.04475 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.002168 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.786176 B =12910.507332 C =13762.270516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.146 3.854 3 N -0.451 5.451 4 C 0.055 3.945 5 C 0.152 3.848 6 H 0.095 0.905 7 C -0.143 4.143 8 C -0.152 4.152 9 C 0.042 3.958 10 O -0.350 6.350 11 S 0.178 5.822 12 C -0.291 4.291 13 C 0.593 3.407 14 O -0.523 6.523 15 N -0.719 5.719 16 C 0.115 3.885 17 C -0.114 4.114 18 C -0.011 4.011 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.066 3.934 22 N -0.902 5.902 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.264 1.264 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 31.239 1.770 31.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.008 3.992 3 N -0.166 5.166 4 C -0.221 4.221 5 C 0.091 3.909 6 H 0.112 0.888 7 C -0.182 4.182 8 C -0.190 4.190 9 C -0.035 4.035 10 O -0.268 6.268 11 S 0.437 5.563 12 C -0.415 4.415 13 C 0.377 3.623 14 O -0.402 6.402 15 N -0.369 5.369 16 C -0.008 4.008 17 C -0.152 4.152 18 C -0.049 4.049 19 C -0.561 4.561 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.945 30.828 1.583 30.883 hybrid contribution -0.971 -0.349 0.085 1.036 sum -0.027 30.479 1.668 30.525 Atomic orbital electron populations 1.20679 0.85727 1.04535 1.03860 1.20744 0.98834 0.84706 0.94940 1.65994 1.04052 1.31065 1.15447 1.26955 0.94366 0.97861 1.02900 1.21426 0.92796 0.85425 0.91284 0.88754 1.22997 1.04099 0.95216 0.95916 1.22932 1.03370 0.96040 0.96630 1.23485 0.97478 0.88992 0.93514 1.89287 1.66258 1.17273 1.53973 1.83844 1.05549 1.01016 1.65933 1.25641 0.95828 0.99468 1.20563 1.16662 0.86306 0.82289 0.77022 1.90788 1.14170 1.84863 1.50391 1.46092 1.09478 1.06857 1.74478 1.21749 0.98131 0.78515 1.02375 1.21729 0.95956 0.95688 1.01874 1.19501 0.97361 0.91260 0.96741 1.21081 0.93537 0.90239 1.51206 0.90991 1.25035 0.97077 0.96948 0.94452 1.69913 1.30993 1.02295 1.50893 0.86772 0.85568 0.78335 0.78599 1.20227 1.21351 1.18895 0.90003 0.87981 0.90757 0.89771 0.89533 0.90181 0.90047 0.88529 0.91790 0.76902 0.91303 0.91293 0.92006 0.91991 0.96232 0.96667 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.71 36.01 0.35 -0.70 16 2 C 0.15 1.90 6.79 -83.89 -0.57 1.33 16 3 N -0.45 -5.73 10.46 -7.70 -0.08 -5.81 16 4 C 0.06 0.58 6.24 -13.29 -0.08 0.50 16 5 C 0.15 1.23 3.80 -27.11 -0.10 1.13 16 6 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 7 C -0.14 -0.88 6.62 -25.16 -0.17 -1.05 16 8 C -0.15 -0.73 7.09 -25.16 -0.18 -0.91 16 9 C 0.04 0.24 7.63 37.94 0.29 0.53 16 10 O -0.35 -3.43 11.30 -35.23 -0.40 -3.83 16 11 S 0.18 1.74 22.31 -107.50 -2.40 -0.66 16 12 C -0.29 -3.76 6.48 -37.10 -0.24 -4.01 16 13 C 0.59 8.85 7.78 -12.85 -0.10 8.75 16 14 O -0.52 -9.13 14.26 5.20 0.07 -9.06 16 15 N -0.72 -10.13 5.55 -61.62 -0.34 -10.47 16 16 C 0.11 1.86 5.67 -4.04 -0.02 1.83 16 17 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 18 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 19 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 20 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 22 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 23 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.32 5.99 -51.93 -0.31 1.00 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.40 4.73 7.66 -40.82 -0.31 4.42 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 42 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -33.67 368.60 -9.45 -43.12 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.46 Total: -0.75 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.51 Total: -8.25 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.35 Total: -43.03 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.32 Total: -12.89 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.40 Total: -0.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.67 -9.45 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341589371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.452 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds