Wall clock time and date at job start Tue Mar 31 2020 13:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53885 * 2 1 4 4 C 1.33387 * 114.91542 * 180.27438 * 3 2 1 5 5 S 1.75885 * 109.59583 * 359.77549 * 4 3 2 6 6 C 1.33384 * 122.53698 * 179.83716 * 2 1 3 7 7 C 1.50703 * 125.20461 * 0.02562 * 6 2 1 8 8 N 1.46505 * 109.47064 * 89.71995 * 7 6 2 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21348 * 120.00744 * 0.02562 * 9 8 7 11 11 C 1.49457 * 119.99493 * 180.02562 * 9 8 7 12 12 O 1.21347 * 120.00233 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99667 * 179.97438 * 11 9 8 14 14 C 1.46505 * 119.99795 * 179.97438 * 13 11 9 15 15 C 1.53005 * 109.46784 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.46886 * 299.99920 * 15 14 13 17 17 C 1.52996 * 109.47245 * 60.00284 * 15 14 13 18 18 C 1.50705 * 109.46609 * 180.02562 * 15 14 13 19 19 H 1.08002 * 119.99790 * 359.97438 * 18 15 14 20 20 C 1.37870 * 119.99615 * 180.02562 * 18 15 14 21 21 N 1.31520 * 120.00380 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00047 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.47282 * 89.99197 * 22 20 18 24 24 H 1.48491 * 109.47436 * 209.99446 * 22 20 18 25 25 H 1.48506 * 109.46856 * 329.99824 * 22 20 18 26 26 H 1.09000 * 109.46974 * 270.16982 * 1 2 3 27 27 H 1.08999 * 109.46782 * 30.16202 * 1 2 3 28 28 H 1.08997 * 109.47095 * 150.16544 * 1 2 3 29 29 H 1.07991 * 122.54231 * 0.04681 * 3 2 1 30 30 H 1.08002 * 125.20018 * 179.75340 * 4 3 2 31 31 H 1.09002 * 109.47152 * 329.72078 * 7 6 2 32 32 H 1.09001 * 109.46980 * 209.72179 * 7 6 2 33 33 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 34 34 H 0.96995 * 120.00011 * 0.02562 * 13 11 9 35 35 H 1.09001 * 109.46919 * 300.00467 * 14 13 11 36 36 H 1.08992 * 109.47069 * 60.00263 * 14 13 11 37 37 H 1.08996 * 109.47340 * 60.00744 * 16 15 14 38 38 H 1.09000 * 109.46925 * 180.02562 * 16 15 14 39 39 H 1.09002 * 109.47726 * 300.00311 * 16 15 14 40 40 H 1.09001 * 109.47367 * 59.99410 * 17 15 14 41 41 H 1.09000 * 109.46870 * 179.97438 * 17 15 14 42 42 H 1.09004 * 109.47108 * 299.99712 * 17 15 14 43 43 H 0.97000 * 119.99859 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9386 -0.7305 -0.0052 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0066 8 7 1.4629 -2.9722 -1.3735 9 6 0.9605 -4.1989 -1.6167 10 8 0.6656 -4.9280 -0.6927 11 6 0.7665 -4.6612 -3.0247 12 8 1.0618 -3.9323 -3.9488 13 7 0.2645 -5.8881 -3.2679 14 6 0.0738 -6.3411 -4.6481 15 6 -0.5052 -7.7574 -4.6446 16 6 0.4613 -8.7015 -3.9268 17 6 -1.8514 -7.7562 -3.9176 18 6 -0.7008 -8.2235 -6.0643 19 1 -0.4387 -7.5744 -6.8867 20 6 -1.2151 -9.4783 -6.3131 21 7 -1.5347 -10.2685 -5.3116 22 14 -1.4583 -10.0559 -8.0728 23 1 -0.2268 -10.7391 -8.5442 24 1 -2.6016 -11.0016 -8.1299 25 1 -1.7394 -8.8861 -8.9434 26 1 -0.3633 0.0030 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3633 -0.8914 -0.5112 29 1 1.7966 2.1464 0.0007 30 1 4.3078 1.7822 -0.0105 31 1 0.6944 -2.5180 0.5244 32 1 2.3418 -3.1922 0.5181 33 1 1.6990 -2.3895 -2.1122 34 1 0.0288 -6.4709 -2.5293 35 1 -0.6150 -5.6685 -5.1593 36 1 1.0327 -6.3415 -5.1661 37 1 0.6031 -8.3646 -2.9000 38 1 0.0490 -9.7106 -3.9247 39 1 1.4204 -8.7024 -4.4447 40 1 -2.5399 -7.0835 -4.4289 41 1 -2.2640 -8.7651 -3.9155 42 1 -1.7095 -7.4192 -2.8907 43 1 -1.8962 -11.1514 -5.4867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421335815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:54 Heat of formation + Delta-G solvation = -47.310226 kcal Electronic energy + Delta-G solvation = -24567.807471 eV Core-core repulsion = 20932.562561 eV Total energy + Delta-G solvation = -3635.244910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45447 -38.99432 -38.21712 -36.48684 -35.16871 -33.30674 -31.49066 -30.89171 -29.34342 -26.56392 -25.72366 -25.52297 -25.03628 -23.24646 -22.50183 -20.27897 -19.17908 -18.81802 -18.38829 -17.30247 -16.72265 -15.95466 -15.87060 -15.56040 -15.25751 -14.85744 -14.53523 -14.48356 -14.12210 -13.70506 -13.48286 -13.05617 -12.97440 -12.92534 -12.65746 -12.38075 -12.22334 -12.14811 -11.98300 -11.49639 -11.40134 -11.18566 -11.06222 -10.88266 -10.70703 -10.40118 -10.20413 -9.65461 -9.61083 -9.39714 -9.33290 -9.01249 -8.80231 -8.68728 -8.60561 -8.37310 -6.02794 -4.13602 0.50699 1.24573 1.62074 1.63994 2.20118 2.71691 3.27995 3.35205 3.38639 3.45870 3.97244 4.24685 4.39147 4.53918 4.77436 4.81694 5.01449 5.14188 5.23261 5.23838 5.30498 5.32241 5.62610 5.67028 6.01975 6.03471 6.11139 6.14093 6.23372 6.46831 6.62721 6.82073 6.85009 6.93743 7.00228 7.07493 7.33134 7.54952 7.65443 7.70086 7.94939 8.00026 8.12340 8.31935 8.40872 8.86618 9.52325 10.98590 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.002181 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.264117 B =12836.432872 C =12915.322780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.077 4.077 3 C -0.136 4.136 4 C -0.204 4.204 5 S 0.117 5.883 6 C -0.214 4.214 7 C 0.194 3.806 8 N -0.703 5.703 9 C 0.509 3.491 10 O -0.519 6.519 11 C 0.496 3.504 12 O -0.534 6.534 13 N -0.680 5.680 14 C 0.128 3.872 15 C 0.056 3.944 16 C -0.134 4.134 17 C -0.134 4.134 18 C -0.507 4.507 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.414 0.586 34 H 0.411 0.589 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.009 0.991 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.087 0.913 42 H 0.009 0.991 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 20.377 13.102 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.091 4.091 3 C -0.166 4.166 4 C -0.340 4.340 5 S 0.383 5.617 6 C -0.331 4.331 7 C 0.069 3.931 8 N -0.358 5.358 9 C 0.290 3.710 10 O -0.394 6.394 11 C 0.275 3.725 12 O -0.412 6.412 13 N -0.331 5.331 14 C 0.006 3.994 15 C 0.055 3.945 16 C -0.192 4.192 17 C -0.191 4.191 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.159 0.841 30 H 0.183 0.817 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.251 0.749 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.106 0.894 42 H 0.028 0.972 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.556 19.288 13.129 24.852 hybrid contribution -1.255 0.643 -0.905 1.675 sum 7.302 19.931 12.225 24.495 Atomic orbital electron populations 1.20618 0.89435 1.03364 1.02663 1.18973 0.97675 0.91483 1.00940 1.20076 0.92847 0.99354 1.04345 1.25697 0.99878 0.99327 1.09113 1.84446 1.05005 1.00108 1.72180 1.24219 0.96410 0.98323 1.14164 1.19665 1.01318 0.88621 0.83473 1.45855 1.64428 1.16525 1.08985 1.20521 0.78075 0.82026 0.90395 1.90762 1.48825 1.54128 1.45707 1.19915 0.80326 0.83677 0.88550 1.90730 1.50699 1.54642 1.45167 1.46221 1.60272 1.14630 1.12005 1.21950 1.00575 0.98264 0.78589 1.18383 0.92175 0.87571 0.96364 1.21858 0.98240 1.03904 0.95153 1.21857 0.98710 1.03440 0.95134 1.20946 1.42635 1.00255 0.90709 0.92355 1.24884 0.95042 0.96528 0.97067 1.69809 1.43465 1.08953 1.30039 0.86555 0.77704 0.78603 0.84898 1.20709 1.21263 1.19909 0.90787 0.91087 0.91076 0.84052 0.81666 0.89052 0.89956 0.74915 0.75171 0.91987 0.91985 0.97253 0.89432 0.95344 0.95341 0.89428 0.97248 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 9.60 36.01 0.35 -0.37 16 2 C -0.08 -0.63 5.80 -106.25 -0.62 -1.25 16 3 C -0.14 -0.98 9.98 -41.21 -0.41 -1.39 16 4 C -0.20 -1.43 11.23 29.04 0.33 -1.10 16 5 S 0.12 0.96 23.33 -107.50 -2.51 -1.55 16 6 C -0.21 -1.91 5.87 -36.00 -0.21 -2.12 16 7 C 0.19 1.94 5.53 -5.19 -0.03 1.91 16 8 N -0.70 -8.42 5.54 -61.90 -0.34 -8.76 16 9 C 0.51 7.71 7.89 -11.58 -0.09 7.62 16 10 O -0.52 -8.79 16.48 5.50 0.09 -8.70 16 11 C 0.50 8.68 7.89 -11.58 -0.09 8.59 16 12 O -0.53 -10.24 16.48 5.50 0.09 -10.15 16 13 N -0.68 -12.58 4.95 -60.72 -0.30 -12.88 16 14 C 0.13 2.67 4.50 -4.04 -0.02 2.65 16 15 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 16 C -0.13 -3.06 8.08 37.15 0.30 -2.76 16 17 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 18 C -0.51 -13.12 8.01 -34.44 -0.28 -13.40 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -23.55 9.35 55.43 0.52 -23.03 16 22 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.07 0.57 7.26 -51.93 -0.38 0.19 16 29 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.09 0.88 7.33 -51.93 -0.38 0.50 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.41 4.78 7.94 -40.82 -0.32 4.46 16 34 H 0.41 7.48 5.63 -40.82 -0.23 7.25 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 38 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 42 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 43 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -28.45 368.26 -8.57 -37.02 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.00 Total: 8.46 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.64 Total: -1.51 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.13 Total: -44.67 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.45 -8.57 -37.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421335815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.295 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds