Wall clock time and date at job start Tue Mar 31 2020 14:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46617 * 2 1 4 4 C 1.52991 * 109.47002 * 240.00158 * 2 1 3 5 5 C 1.50704 * 109.47080 * 119.99975 * 2 1 3 6 6 N 1.28638 * 124.71903 * 60.00042 * 5 2 1 7 7 C 1.33563 * 115.76448 * 180.02562 * 6 5 2 8 8 C 1.47260 * 123.14316 * 179.97438 * 7 6 5 9 9 O 1.21638 * 120.00449 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00044 * 359.97438 * 8 7 6 11 11 C 1.47422 * 125.64926 * 0.02877 * 10 8 7 12 12 C 1.54909 * 104.83564 * 155.82503 * 11 10 8 13 13 C 1.55152 * 101.58032 * 37.00513 * 12 11 10 14 14 O 1.42903 * 110.72100 * 82.86680 * 13 12 11 15 15 C 1.50703 * 110.71825 * 205.95483 * 13 12 11 16 16 H 1.07993 * 120.00249 * 357.56786 * 15 13 12 17 17 C 1.37877 * 119.99923 * 177.55974 * 15 13 12 18 18 N 1.31521 * 120.00053 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00236 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46913 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47079 * 119.99981 * 19 17 15 22 22 H 1.48501 * 109.46992 * 240.00088 * 19 17 15 23 23 C 1.47027 * 125.65206 * 179.97438 * 10 8 7 24 24 C 1.35208 * 113.71442 * 0.24622 * 7 6 5 25 25 S 1.70773 * 124.71715 * 240.00056 * 5 2 1 26 26 H 1.09005 * 109.47208 * 299.99622 * 1 2 3 27 27 H 1.08995 * 109.47124 * 60.00399 * 1 2 3 28 28 H 1.09002 * 109.46521 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46683 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47048 * 299.99648 * 3 2 1 31 31 H 1.09000 * 109.47454 * 60.00073 * 3 2 1 32 32 H 1.09004 * 109.47570 * 299.99373 * 4 2 1 33 33 H 1.08995 * 109.47636 * 59.99757 * 4 2 1 34 34 H 1.09005 * 109.46981 * 179.97438 * 4 2 1 35 35 H 1.09002 * 110.36847 * 36.97758 * 11 10 8 36 36 H 1.09005 * 110.45737 * 274.70993 * 11 10 8 37 37 H 1.09005 * 111.00113 * 278.93173 * 12 11 10 38 38 H 1.08998 * 111.03822 * 155.09465 * 12 11 10 39 39 H 0.96700 * 114.00311 * 179.97438 * 14 13 12 40 40 H 0.97000 * 119.99959 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.87825 * 61.68763 * 23 10 8 42 42 H 1.09001 * 109.88209 * 300.52818 * 23 10 8 43 43 H 1.08006 * 125.58304 * 179.75493 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7782 -1.9369 1.5235 7 6 2.3155 -2.3855 2.6610 8 6 2.1290 -3.7612 3.1520 9 8 2.6456 -4.1095 4.1967 10 7 1.3859 -4.6345 2.4438 11 6 0.7064 -4.3473 1.1674 12 6 0.5489 -5.7278 0.4825 13 6 0.2514 -6.6460 1.6972 14 8 -1.1336 -6.5918 2.0448 15 6 0.6716 -8.0643 1.4090 16 1 1.0761 -8.3216 0.4413 17 6 0.5397 -9.0334 2.3808 18 7 0.0467 -8.7201 3.5592 19 14 1.0611 -10.7913 2.0238 20 1 1.5790 -10.8816 0.6350 21 1 2.1258 -11.1950 2.9770 22 1 -0.1077 -11.6947 2.1755 23 6 1.1194 -6.0318 2.8156 24 6 3.0420 -1.4566 3.3226 25 16 3.0183 0.0009 2.4299 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7208 -1.2494 35 1 1.3175 -3.6863 0.5527 36 1 -0.2709 -3.8998 1.3483 37 1 1.4722 -6.0247 -0.0150 38 1 -0.2861 -5.7240 -0.2181 39 1 -1.3721 -7.1488 2.7984 40 1 -0.0465 -9.4020 4.2428 41 1 0.5823 -6.0671 3.7634 42 1 2.0585 -6.5789 2.8987 43 1 3.5552 -1.6111 4.2603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:01 Heat of formation + Delta-G solvation = -68.225796 kcal Electronic energy + Delta-G solvation = -26047.596075 eV Core-core repulsion = 22411.444198 eV Total energy + Delta-G solvation = -3636.151877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77042 -40.30504 -38.98058 -37.46084 -36.15449 -34.23428 -31.92376 -31.12265 -29.76872 -28.24809 -28.10140 -27.83136 -26.13650 -24.73693 -22.98041 -21.47112 -20.46308 -20.18128 -19.30122 -18.99142 -17.55251 -17.16384 -16.97044 -16.84217 -16.21487 -15.95882 -15.75203 -15.10991 -14.91215 -14.83395 -14.75817 -14.41116 -14.35302 -13.83083 -13.54579 -13.40931 -13.14834 -13.02030 -12.90746 -12.74165 -12.62715 -12.52546 -12.46449 -12.34459 -12.26986 -12.13154 -11.92097 -11.80175 -11.32216 -11.22355 -10.73038 -10.61317 -10.49951 -10.33656 -9.98222 -9.57312 -8.29710 -6.46526 -0.52490 0.25683 0.58206 0.90658 1.38806 1.41421 1.53042 2.04631 2.23313 2.36157 2.84646 2.96467 3.52656 3.79905 3.91639 4.02437 4.02953 4.07386 4.15753 4.24207 4.35617 4.39845 4.57957 4.67544 4.79407 4.82953 4.87600 4.93012 4.95735 5.05162 5.05386 5.09492 5.12566 5.28005 5.32442 5.33373 5.44609 5.45680 5.48630 5.70633 6.00105 6.41181 6.53724 6.62926 7.00953 7.24812 7.32521 8.76880 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.003462 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.060292 B = 8086.824213 C = 8806.282898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.011 3.989 3 C -0.154 4.154 4 C -0.135 4.135 5 C 0.023 3.977 6 N -0.455 5.455 7 C -0.005 4.005 8 C 0.583 3.417 9 O -0.591 6.591 10 N -0.598 5.598 11 C 0.122 3.878 12 C -0.114 4.114 13 C 0.235 3.765 14 O -0.588 6.588 15 C -0.558 4.558 16 H 0.069 0.931 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.275 1.275 23 C 0.121 3.879 24 C -0.247 4.247 25 S 0.302 5.698 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.377 0.623 40 H 0.271 0.729 41 H 0.032 0.968 42 H 0.036 0.964 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 23.510 -9.085 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 C -0.212 4.212 4 C -0.194 4.194 5 C -0.256 4.256 6 N -0.170 5.170 7 C -0.139 4.139 8 C 0.371 3.629 9 O -0.473 6.473 10 N -0.328 5.328 11 C 0.001 3.999 12 C -0.152 4.152 13 C 0.195 3.805 14 O -0.396 6.396 15 C -0.596 4.596 16 H 0.087 0.913 17 C -0.176 4.176 18 N -0.557 5.557 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.201 1.201 23 C -0.002 4.002 24 C -0.390 4.390 25 S 0.562 5.438 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.227 0.773 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.788 24.363 -9.038 26.423 hybrid contribution 0.036 -3.080 1.627 3.483 sum 4.823 21.283 -7.411 23.047 Atomic orbital electron populations 1.21862 0.92077 1.02292 1.03141 1.19440 0.96750 0.95056 0.87983 1.22075 1.02101 0.92327 1.04654 1.21864 1.01189 1.00393 0.95944 1.27979 1.01205 0.93254 1.03198 1.66944 1.22170 1.13397 1.14485 1.20004 1.03947 0.95441 0.94555 1.17466 0.78337 0.84095 0.83015 1.90731 1.52110 1.79269 1.25190 1.48649 1.47819 1.12124 1.24206 1.22500 0.96934 0.97220 0.83284 1.22808 1.02127 0.93317 0.96964 1.19690 0.78663 0.92977 0.89186 1.86082 1.27328 1.71118 1.55113 1.21866 1.43615 0.93888 1.00214 0.91320 1.25868 0.93829 1.03540 0.94385 1.69766 1.45423 1.35694 1.04839 0.85359 0.77943 0.78956 0.78506 1.18801 1.20898 1.20076 1.22603 0.98899 0.79190 0.99558 1.26898 1.05168 0.99405 1.07512 1.82229 1.42820 1.08414 1.10300 0.92598 0.89249 0.93516 0.91091 0.88486 0.91201 0.93352 0.89281 0.92382 0.87151 0.92388 0.90074 0.89196 0.77301 0.91938 0.94951 0.94505 0.79510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.45 71.98 0.61 -1.42 16 2 C 0.01 0.17 0.99 -52.93 -0.05 0.11 16 3 C -0.15 -1.22 7.53 71.98 0.54 -0.68 16 4 C -0.14 -1.94 8.45 71.98 0.61 -1.33 16 5 C 0.02 0.49 5.74 88.58 0.51 1.00 16 6 N -0.45 -13.52 7.31 -180.84 -1.32 -14.84 16 7 C 0.00 -0.17 6.61 40.55 0.27 0.10 16 8 C 0.58 26.50 7.83 86.62 0.68 27.18 16 9 O -0.59 -30.54 17.04 -4.15 -0.07 -30.61 16 10 N -0.60 -27.88 3.33 -815.83 -2.71 -30.59 16 11 C 0.12 4.87 6.03 86.86 0.52 5.39 16 12 C -0.11 -4.84 6.22 31.98 0.20 -4.64 16 13 C 0.24 12.13 0.86 -10.36 -0.01 12.12 16 14 O -0.59 -31.51 13.09 -148.98 -1.95 -33.46 16 15 C -0.56 -30.39 8.12 25.60 0.21 -30.19 16 16 H 0.07 3.64 7.77 -2.91 -0.02 3.61 16 17 C 0.02 1.32 5.26 84.65 0.45 1.76 16 18 N -0.92 -51.42 10.97 21.45 0.24 -51.19 16 19 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 23 C 0.12 6.46 5.39 86.72 0.47 6.93 16 24 C -0.25 -6.76 10.62 67.12 0.71 -6.04 16 25 S 0.30 5.15 21.28 -56.49 -1.20 3.95 16 26 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.48 7.91 -2.38 -0.02 0.46 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.49 7.91 -2.39 -0.02 0.47 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.11 3.90 6.02 -2.39 -0.01 3.89 16 36 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.08 3.29 8.04 -2.38 -0.02 3.27 16 38 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.38 20.97 7.17 -74.06 -0.53 20.44 16 40 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.03 1.90 8.01 -2.39 -0.02 1.88 16 42 H 0.04 2.14 7.82 -2.39 -0.02 2.12 16 43 H 0.19 4.92 8.03 -2.91 -0.02 4.90 16 Total: -1.00 -70.20 362.24 1.20 -69.00 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.49 Total: 32.39 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 5.71 Total: 10.30 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -3.80 Total: -96.62 kcal Atomic # 8 Polarization: -62.05 SS G_CDS: -2.02 Total: -64.07 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.20 Total: 3.95 kcal Total: -70.20 1.20 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.770 kcal (2) G-P(sol) polarization free energy of solvation -70.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds