Wall clock time and date at job start Tue Mar 31 2020 14:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 C 1.53003 * 109.47499 * 120.00130 * 2 1 3 5 5 C 1.50699 * 109.47330 * 174.99732 * 4 2 1 6 6 N 1.29428 * 124.80084 * 89.69951 * 5 4 2 7 7 C 1.30941 * 117.36378 * 179.76724 * 6 5 4 8 8 C 1.35665 * 114.19131 * 0.51780 * 7 6 5 9 9 C 1.46672 * 126.13309 * 179.69777 * 8 7 6 10 10 O 1.21695 * 120.00226 * 354.66182 * 9 8 7 11 11 N 1.34776 * 120.00156 * 174.66073 * 9 8 7 12 12 C 1.47026 * 125.64927 * 4.93566 * 11 9 8 13 13 C 1.54325 * 107.27376 * 181.02267 * 12 11 9 14 14 C 1.55159 * 102.93955 * 22.19558 * 13 12 11 15 15 O 1.42899 * 111.00464 * 82.57336 * 14 13 12 16 16 C 1.50701 * 111.00100 * 206.38682 * 14 13 12 17 17 H 1.08002 * 120.00136 * 359.33509 * 16 14 13 18 18 C 1.37882 * 120.00194 * 179.33423 * 16 14 13 19 19 N 1.31513 * 119.99809 * 352.21043 * 18 16 14 20 20 Si 1.86793 * 120.00148 * 172.20561 * 18 16 14 21 21 H 1.48508 * 109.46798 * 94.99480 * 20 18 16 22 22 H 1.48496 * 109.47443 * 214.99259 * 20 18 16 23 23 H 1.48499 * 109.47627 * 334.99633 * 20 18 16 24 24 C 1.47430 * 125.65133 * 184.62883 * 11 9 8 25 25 S 1.70951 * 124.80560 * 270.00022 * 5 4 2 26 26 H 1.09000 * 109.47241 * 59.99940 * 1 2 3 27 27 H 1.08999 * 109.46960 * 299.99509 * 1 2 3 28 28 H 1.08999 * 109.46934 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46959 * 240.00052 * 2 1 3 30 30 H 1.09007 * 109.47028 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47145 * 300.00118 * 3 2 1 32 32 H 1.09005 * 109.47195 * 60.00196 * 3 2 1 33 33 H 1.08997 * 109.47067 * 295.00001 * 4 2 1 34 34 H 1.09004 * 109.46928 * 54.99710 * 4 2 1 35 35 H 1.08002 * 122.90605 * 180.25017 * 7 6 5 36 36 H 1.09001 * 109.88150 * 300.44158 * 12 11 9 37 37 H 1.08995 * 109.88020 * 61.45026 * 12 11 9 38 38 H 1.08997 * 110.71928 * 140.55790 * 13 12 11 39 39 H 1.09002 * 110.71763 * 263.83246 * 13 12 11 40 40 H 0.96703 * 113.99539 * 179.97438 * 15 14 13 41 41 H 0.96999 * 120.00655 * 179.97438 * 19 18 16 42 42 H 1.08997 * 110.36747 * 274.75052 * 24 11 9 43 43 H 1.09007 * 110.36372 * 37.06799 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.8295 1.1888 6 7 4.3655 0.0525 1.6569 7 6 5.6456 -0.1920 1.5296 8 6 5.9286 -1.3597 0.8995 9 6 7.2675 -1.8856 0.6133 10 8 8.2512 -1.2137 0.8621 11 7 7.4085 -3.1129 0.0747 12 6 6.3113 -3.9855 -0.3684 13 6 6.9465 -5.2922 -0.8887 14 6 8.3300 -5.3096 -0.1865 15 8 8.2240 -5.8268 1.1414 16 6 9.3339 -6.0950 -0.9905 17 1 9.0367 -6.5614 -1.9182 18 6 10.6318 -6.2183 -0.5418 19 7 11.0348 -5.5280 0.5025 20 14 11.8177 -7.3657 -1.4172 21 1 12.6091 -6.5958 -2.4103 22 1 12.7341 -7.9819 -0.4244 23 1 11.0527 -8.4315 -2.1129 24 6 8.6889 -3.8005 -0.1737 25 16 4.3991 -2.1309 0.4858 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7518 -0.1584 2.1369 34 1 1.6055 -1.7198 1.2951 35 1 6.4101 0.4799 1.8910 36 1 5.6492 -4.2032 0.4697 37 1 5.7507 -3.4996 -1.1670 38 1 6.3517 -6.1555 -0.5904 39 1 7.0641 -5.2592 -1.9718 40 1 9.0638 -5.8573 1.6197 41 1 11.9478 -5.6148 0.8185 42 1 9.1014 -3.4980 -1.1361 43 1 9.3962 -3.5860 0.6275 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823528098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:19 Heat of formation + Delta-G solvation = -53.406153 kcal Electronic energy + Delta-G solvation = -25341.636465 eV Core-core repulsion = 21706.127215 eV Total energy + Delta-G solvation = -3635.509249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.03941 -39.22365 -37.24157 -36.49346 -34.41198 -32.26121 -31.24226 -30.24490 -28.48169 -27.75622 -27.37647 -25.41237 -24.22710 -22.80482 -20.99589 -20.61564 -19.73101 -18.54425 -18.10402 -17.25877 -16.40024 -15.68940 -15.51003 -15.22845 -15.14005 -14.84127 -14.42977 -14.23832 -13.96535 -13.64129 -13.24358 -13.07714 -12.93318 -12.76897 -12.53188 -12.17439 -12.09181 -11.85792 -11.67798 -11.41974 -11.40592 -11.18344 -11.07983 -11.01191 -10.89965 -10.75020 -10.55842 -10.29100 -9.73774 -9.62694 -9.39767 -9.33070 -8.89340 -8.78599 -8.45437 -7.89312 -6.34874 -4.44424 0.34051 1.23612 1.66790 2.57931 3.16400 3.25240 3.28163 3.45013 3.53859 3.97172 4.21662 4.53186 4.59786 4.69045 4.85845 4.95485 5.12377 5.24720 5.25980 5.29295 5.38517 5.40933 5.47659 5.52554 5.61927 5.67356 5.68638 5.83432 5.86733 6.00201 6.05816 6.11592 6.17900 6.38410 6.61603 6.76465 6.85041 7.16793 7.25422 7.64888 7.67542 7.90765 8.03922 8.52460 8.59642 9.24272 9.29083 10.71688 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.002934 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.958774 B = 9540.818157 C =10055.583198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.041 4.041 5 C 0.032 3.968 6 N -0.476 5.476 7 C 0.106 3.894 8 C -0.274 4.274 9 C 0.596 3.404 10 O -0.537 6.537 11 N -0.601 5.601 12 C 0.092 3.908 13 C -0.112 4.112 14 C 0.250 3.750 15 O -0.581 6.581 16 C -0.541 4.541 17 H 0.069 0.931 18 C 0.071 3.929 19 N -0.891 5.891 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.096 3.904 25 S 0.184 5.816 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.185 0.815 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.383 0.617 41 H 0.271 0.729 42 H 0.065 0.935 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 7.459 -1.061 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.082 4.082 5 C -0.243 4.243 6 N -0.190 5.190 7 C -0.052 4.052 8 C -0.398 4.398 9 C 0.383 3.617 10 O -0.417 6.417 11 N -0.333 5.333 12 C -0.032 4.032 13 C -0.150 4.150 14 C 0.209 3.791 15 O -0.390 6.390 16 C -0.579 4.579 17 H 0.087 0.913 18 C -0.132 4.132 19 N -0.529 5.529 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.024 4.024 25 S 0.442 5.558 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.234 0.766 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.023 7.385 -1.201 20.441 hybrid contribution 2.033 0.141 0.097 2.040 sum -16.989 7.526 -1.104 18.614 Atomic orbital electron populations 1.21829 0.94347 1.01978 1.02178 1.21128 0.95976 0.97045 0.96946 1.21845 1.01945 0.95093 1.01529 1.20420 0.85093 1.02287 1.00383 1.27619 1.01450 0.94911 1.00272 1.66241 1.02102 1.29984 1.20662 1.22104 0.92204 0.94626 0.96222 1.25940 0.97847 1.02485 1.13564 1.16367 0.86086 0.80828 0.78438 1.90818 1.38567 1.57690 1.54592 1.48650 1.10746 1.14743 1.59164 1.22153 0.89944 0.92712 0.98402 1.22604 0.97883 0.94317 1.00187 1.19638 0.90278 0.87562 0.81638 1.86091 1.37908 1.86684 1.28355 1.21452 0.94408 1.33641 1.08379 0.91330 1.25092 0.98181 0.94915 0.95038 1.69731 1.18791 1.39290 1.25093 0.86384 0.80360 0.80842 0.79313 1.20499 1.20874 1.19588 1.23452 0.83128 0.94274 1.01593 1.84267 0.96383 1.21930 1.53249 0.92289 0.92389 0.92432 0.90910 0.92081 0.92918 0.92416 0.88766 0.89522 0.79810 0.91577 0.92174 0.90317 0.90069 0.76610 0.91880 0.91705 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.09 -0.70 2.91 -90.62 -0.26 -0.97 16 3 C -0.15 -1.29 8.99 37.16 0.33 -0.95 16 4 C -0.04 -0.35 5.27 -27.88 -0.15 -0.50 16 5 C 0.03 0.38 5.89 -13.29 -0.08 0.30 16 6 N -0.48 -6.67 9.72 -11.50 -0.11 -6.78 16 7 C 0.11 1.63 11.09 -18.85 -0.21 1.42 16 8 C -0.27 -4.58 6.40 -37.10 -0.24 -4.82 16 9 C 0.60 12.32 7.81 -12.86 -0.10 12.22 16 10 O -0.54 -12.76 17.17 5.19 0.09 -12.67 16 11 N -0.60 -12.42 3.33 -171.91 -0.57 -12.99 16 12 C 0.09 1.59 5.20 -3.06 -0.02 1.58 16 13 C -0.11 -2.12 6.12 -24.89 -0.15 -2.27 16 14 C 0.25 5.84 0.89 -89.50 -0.08 5.76 16 15 O -0.58 -14.38 13.19 -35.23 -0.46 -14.84 16 16 C -0.54 -13.58 8.24 -34.44 -0.28 -13.86 16 17 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 18 C 0.07 1.81 5.24 -17.82 -0.09 1.72 16 19 N -0.89 -23.24 10.75 55.43 0.60 -22.64 16 20 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.10 2.28 5.50 -2.41 -0.01 2.26 16 25 S 0.18 2.35 18.68 -107.50 -2.01 0.34 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.67 6.79 -51.93 -0.35 0.32 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.19 2.71 8.06 -52.49 -0.42 2.29 16 36 H 0.07 1.08 6.70 -51.93 -0.35 0.74 16 37 H 0.06 0.89 7.19 -51.93 -0.37 0.51 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16 40 H 0.38 9.80 7.28 45.56 0.33 10.13 16 41 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.06 1.57 8.04 -51.93 -0.42 1.15 16 43 H 0.09 2.35 7.48 -51.93 -0.39 1.96 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -28.99 361.37 -8.78 -37.78 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.74 Total: 10.16 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.00 Total: 1.38 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.09 Total: -42.42 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.38 Total: -27.52 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.01 Total: 0.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.99 -8.78 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.630 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds