Wall clock time and date at job start Tue Mar 31 2020 14:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 C 1.53003 * 109.47499 * 120.00130 * 2 1 3 5 5 C 1.50699 * 109.47330 * 174.99732 * 4 2 1 6 6 N 1.29428 * 124.80084 * 89.69951 * 5 4 2 7 7 C 1.30941 * 117.36378 * 179.76724 * 6 5 4 8 8 C 1.35665 * 114.19131 * 0.51780 * 7 6 5 9 9 C 1.46672 * 126.13309 * 179.69777 * 8 7 6 10 10 O 1.21695 * 120.00226 * 354.66182 * 9 8 7 11 11 N 1.34776 * 120.00156 * 174.66073 * 9 8 7 12 12 C 1.47026 * 125.64927 * 4.93566 * 11 9 8 13 13 C 1.54325 * 107.27376 * 181.02267 * 12 11 9 14 14 C 1.55159 * 102.93955 * 22.19558 * 13 12 11 15 15 O 1.42899 * 111.00464 * 82.57336 * 14 13 12 16 16 C 1.50701 * 111.00100 * 206.38682 * 14 13 12 17 17 H 1.08002 * 120.00136 * 359.33509 * 16 14 13 18 18 C 1.37882 * 120.00194 * 179.33423 * 16 14 13 19 19 N 1.31513 * 119.99809 * 352.21043 * 18 16 14 20 20 Si 1.86793 * 120.00148 * 172.20561 * 18 16 14 21 21 H 1.48508 * 109.46798 * 94.99480 * 20 18 16 22 22 H 1.48496 * 109.47443 * 214.99259 * 20 18 16 23 23 H 1.48499 * 109.47627 * 334.99633 * 20 18 16 24 24 C 1.47430 * 125.65133 * 184.62883 * 11 9 8 25 25 S 1.70951 * 124.80560 * 270.00022 * 5 4 2 26 26 H 1.09000 * 109.47241 * 59.99940 * 1 2 3 27 27 H 1.08999 * 109.46960 * 299.99509 * 1 2 3 28 28 H 1.08999 * 109.46934 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46959 * 240.00052 * 2 1 3 30 30 H 1.09007 * 109.47028 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47145 * 300.00118 * 3 2 1 32 32 H 1.09005 * 109.47195 * 60.00196 * 3 2 1 33 33 H 1.08997 * 109.47067 * 295.00001 * 4 2 1 34 34 H 1.09004 * 109.46928 * 54.99710 * 4 2 1 35 35 H 1.08002 * 122.90605 * 180.25017 * 7 6 5 36 36 H 1.09001 * 109.88150 * 300.44158 * 12 11 9 37 37 H 1.08995 * 109.88020 * 61.45026 * 12 11 9 38 38 H 1.08997 * 110.71928 * 140.55790 * 13 12 11 39 39 H 1.09002 * 110.71763 * 263.83246 * 13 12 11 40 40 H 0.96703 * 113.99539 * 179.97438 * 15 14 13 41 41 H 0.96999 * 120.00655 * 179.97438 * 19 18 16 42 42 H 1.08997 * 110.36747 * 274.75052 * 24 11 9 43 43 H 1.09007 * 110.36372 * 37.06799 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.8295 1.1888 6 7 4.3655 0.0525 1.6569 7 6 5.6456 -0.1920 1.5296 8 6 5.9286 -1.3597 0.8995 9 6 7.2675 -1.8856 0.6133 10 8 8.2512 -1.2137 0.8621 11 7 7.4085 -3.1129 0.0747 12 6 6.3113 -3.9855 -0.3684 13 6 6.9465 -5.2922 -0.8887 14 6 8.3300 -5.3096 -0.1865 15 8 8.2240 -5.8268 1.1414 16 6 9.3339 -6.0950 -0.9905 17 1 9.0367 -6.5614 -1.9182 18 6 10.6318 -6.2183 -0.5418 19 7 11.0348 -5.5280 0.5025 20 14 11.8177 -7.3657 -1.4172 21 1 12.6091 -6.5958 -2.4103 22 1 12.7341 -7.9819 -0.4244 23 1 11.0527 -8.4315 -2.1129 24 6 8.6889 -3.8005 -0.1737 25 16 4.3991 -2.1309 0.4858 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7518 -0.1584 2.1369 34 1 1.6055 -1.7198 1.2951 35 1 6.4101 0.4799 1.8910 36 1 5.6492 -4.2032 0.4697 37 1 5.7507 -3.4996 -1.1670 38 1 6.3517 -6.1555 -0.5904 39 1 7.0641 -5.2592 -1.9718 40 1 9.0638 -5.8573 1.6197 41 1 11.9478 -5.6148 0.8185 42 1 9.1014 -3.4980 -1.1361 43 1 9.3962 -3.5860 0.6275 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823528098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:18 Heat of formation + Delta-G solvation = -72.752944 kcal Electronic energy + Delta-G solvation = -25342.475404 eV Core-core repulsion = 21706.127215 eV Total energy + Delta-G solvation = -3636.348189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37370 -40.63719 -38.90560 -37.23526 -36.20283 -34.21540 -32.51239 -31.68977 -29.86407 -29.13296 -27.96300 -27.11962 -25.39955 -24.29726 -22.34817 -21.51334 -21.26667 -19.73778 -19.49877 -19.07224 -17.78269 -17.22711 -16.97973 -16.90594 -16.16726 -15.94059 -15.88075 -15.43779 -15.00035 -14.90929 -14.83982 -14.71886 -14.27551 -13.86470 -13.62241 -13.46271 -13.38398 -13.02698 -12.90245 -12.76032 -12.68763 -12.49289 -12.36064 -12.27409 -12.19339 -12.08146 -11.79340 -11.60227 -11.32359 -11.26039 -10.74833 -10.62554 -10.50244 -10.35075 -10.03666 -9.52881 -8.27102 -6.43641 -0.81694 0.12614 0.55829 1.34365 1.41746 1.45261 1.55261 1.89825 2.07118 2.38115 2.98095 3.01319 3.48479 3.67945 3.83011 3.94927 4.02351 4.02546 4.09125 4.16242 4.28312 4.36368 4.48178 4.67923 4.68138 4.71882 4.84248 4.89500 4.97762 4.98944 5.00541 5.06351 5.15635 5.19561 5.29820 5.33765 5.41310 5.46482 5.49875 5.73410 6.00372 6.41246 6.57491 6.64597 6.92604 7.25588 7.31207 8.77932 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.002934 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.958774 B = 9540.818157 C =10055.583198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.045 4.045 5 C 0.051 3.949 6 N -0.492 5.492 7 C 0.117 3.883 8 C -0.319 4.319 9 C 0.592 3.408 10 O -0.585 6.585 11 N -0.607 5.607 12 C 0.093 3.907 13 C -0.106 4.106 14 C 0.234 3.766 15 O -0.586 6.586 16 C -0.556 4.556 17 H 0.074 0.926 18 C 0.026 3.974 19 N -0.916 5.916 20 Si 0.965 3.035 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.263 1.263 24 C 0.108 3.892 25 S 0.235 5.765 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.180 0.820 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.375 0.625 41 H 0.270 0.730 42 H 0.049 0.951 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.956 6.736 -2.021 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.085 4.085 5 C -0.223 4.223 6 N -0.206 5.206 7 C -0.042 4.042 8 C -0.443 4.443 9 C 0.381 3.619 10 O -0.468 6.468 11 N -0.338 5.338 12 C -0.030 4.030 13 C -0.144 4.144 14 C 0.194 3.806 15 O -0.394 6.394 16 C -0.594 4.594 17 H 0.092 0.908 18 C -0.175 4.175 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.014 4.014 25 S 0.494 5.506 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.197 0.803 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.224 0.776 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.513 6.632 -2.184 23.571 hybrid contribution 2.980 0.448 0.413 3.041 sum -19.534 7.080 -1.771 20.852 Atomic orbital electron populations 1.21798 0.92499 1.02961 1.02663 1.21135 0.97401 0.95933 0.96337 1.21850 1.00227 0.96300 1.02096 1.20724 0.82332 1.04262 1.01205 1.28363 1.02921 0.93583 0.97424 1.66349 1.01472 1.30747 1.22076 1.22175 0.93004 0.94045 0.95002 1.25537 0.97804 1.04179 1.16736 1.16873 0.87305 0.80310 0.77367 1.90769 1.40728 1.58890 1.56405 1.48664 1.10521 1.15163 1.59477 1.22330 0.89109 0.91645 0.99876 1.22621 0.95296 0.95811 1.00623 1.19875 0.92917 0.86691 0.81156 1.86080 1.37333 1.86822 1.29121 1.21795 0.95053 1.33760 1.08754 0.90814 1.25842 0.99823 0.96115 0.95729 1.69857 1.18936 1.40356 1.26337 0.85436 0.78327 0.79091 0.78129 1.20515 1.20987 1.18726 1.23033 0.83973 0.95325 0.99080 1.83873 0.93229 1.21028 1.52458 0.91891 0.91919 0.91206 0.90899 0.94632 0.92118 0.92213 0.87933 0.86766 0.80271 0.90208 0.88908 0.88729 0.88594 0.77593 0.92093 0.93283 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.19 71.98 0.66 -0.46 16 2 C -0.09 -1.06 2.91 -10.79 -0.03 -1.09 16 3 C -0.15 -2.27 8.99 71.98 0.65 -1.62 16 4 C -0.04 -0.59 5.27 29.85 0.16 -0.43 16 5 C 0.05 1.08 5.89 88.46 0.52 1.60 16 6 N -0.49 -13.14 9.72 -190.30 -1.85 -15.00 16 7 C 0.12 3.61 11.09 84.23 0.93 4.55 16 8 C -0.32 -10.57 6.40 23.88 0.15 -10.41 16 9 C 0.59 25.22 7.81 86.45 0.68 25.90 16 10 O -0.58 -29.47 17.17 -4.33 -0.07 -29.54 16 11 N -0.61 -25.42 3.33 -816.03 -2.71 -28.13 16 12 C 0.09 3.05 5.20 86.73 0.45 3.50 16 13 C -0.11 -3.81 6.12 31.78 0.19 -3.62 16 14 C 0.23 11.03 0.89 -10.07 -0.01 11.03 16 15 O -0.59 -29.42 13.19 -148.98 -1.97 -31.38 16 16 C -0.56 -28.00 8.24 25.60 0.21 -27.79 16 17 H 0.07 3.55 7.78 -2.91 -0.02 3.53 16 18 C 0.03 1.33 5.24 84.66 0.44 1.77 16 19 N -0.92 -49.43 10.75 21.45 0.23 -49.20 16 20 Si 0.96 40.96 29.54 68.60 2.03 42.98 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 24 C 0.11 5.33 5.50 86.93 0.48 5.80 16 25 S 0.24 5.37 18.68 -56.49 -1.06 4.32 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.03 0.73 6.79 -2.38 -0.02 0.71 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.18 5.52 8.06 -2.91 -0.02 5.50 16 36 H 0.08 2.40 6.70 -2.39 -0.02 2.38 16 37 H 0.09 2.44 7.19 -2.39 -0.02 2.42 16 38 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.10 3.16 8.02 -2.39 -0.02 3.14 16 40 H 0.37 19.92 7.28 -74.06 -0.54 19.38 16 41 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.05 2.50 8.04 -2.39 -0.02 2.48 16 43 H 0.05 2.69 7.48 -2.38 -0.02 2.67 16 Total: -1.00 -65.63 361.37 0.57 -65.06 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.48 Total: 32.18 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.49 Total: 8.71 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -4.33 Total: -92.33 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -2.04 Total: -60.92 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.06 Total: 4.32 kcal Total: -65.63 0.57 -65.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.690 kcal (2) G-P(sol) polarization free energy of solvation -65.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds