Wall clock time and date at job start Tue Mar 31 2020 13:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46730 * 180.02562 * 7 6 4 9 9 C 1.52581 * 109.22862 * 296.23243 * 8 7 6 10 10 C 1.53096 * 109.95578 * 169.00229 * 9 8 7 11 11 S 1.81748 * 108.84109 * 63.03147 * 10 9 8 12 12 C 1.81749 * 102.21830 * 306.73126 * 11 10 9 13 13 C 1.52586 * 109.22547 * 174.99923 * 8 7 6 14 14 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 15 15 N 1.30427 * 108.01038 * 359.72043 * 14 3 2 16 16 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 17 17 C 1.46491 * 125.74900 * 359.97341 * 16 2 1 18 18 C 1.50702 * 109.46957 * 90.00099 * 17 16 2 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 27 27 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 28 28 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 29 29 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 30 30 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 31 31 H 1.08999 * 109.22421 * 55.59833 * 8 7 6 32 32 H 1.08992 * 109.39447 * 289.15837 * 9 8 7 33 33 H 1.09007 * 109.38872 * 48.85798 * 9 8 7 34 34 H 1.09004 * 109.57957 * 303.21928 * 10 9 8 35 35 H 1.09004 * 109.57310 * 182.83743 * 10 9 8 36 36 H 1.08996 * 109.57768 * 293.45489 * 12 11 10 37 37 H 1.09002 * 109.57549 * 173.07391 * 12 11 10 38 38 H 1.08996 * 109.39023 * 311.14336 * 13 8 7 39 39 H 1.09000 * 109.38971 * 70.94792 * 13 8 7 40 40 H 1.08000 * 125.99491 * 179.97438 * 14 3 2 41 41 H 1.09004 * 109.47166 * 330.00365 * 17 16 2 42 42 H 1.08994 * 109.47507 * 210.00071 * 17 16 2 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4745 5.8499 0.0029 9 6 4.2695 5.6805 1.2941 10 6 5.5927 6.4446 1.1972 11 16 5.2349 8.2177 1.0204 12 6 4.0978 8.2412 -0.3973 13 6 2.9430 7.2748 -0.1209 14 6 3.6599 0.6496 -0.0006 15 7 3.6340 -0.6544 0.0051 16 7 2.3015 -1.0818 -0.0005 17 6 1.8499 -2.4754 -0.0006 18 6 1.6945 -2.9530 -1.4214 19 1 1.9110 -2.2853 -2.2423 20 6 1.2819 -4.2443 -1.6735 21 7 1.0187 -5.0574 -0.6739 22 14 1.0967 -4.8386 -3.4346 23 1 1.4518 -3.7395 -4.3679 24 1 2.0006 -5.9942 -3.6647 25 1 -0.3090 -5.2549 -3.6715 26 1 -0.3633 -0.0006 1.0277 27 1 -0.3633 0.8902 -0.5133 28 1 -0.3633 -0.8897 -0.5143 29 1 1.6897 5.0353 -0.8860 30 1 1.6910 5.0334 0.8939 31 1 4.1213 5.6331 -0.8473 32 1 3.6882 6.0681 2.1306 33 1 4.4739 4.6222 1.4570 34 1 6.1527 6.0966 0.3291 35 1 6.1774 6.2784 2.1019 36 1 4.6286 7.9284 -1.2964 37 1 3.7058 9.2490 -0.5344 38 1 2.2262 7.3238 -0.9405 39 1 2.4498 7.5591 0.8087 40 1 4.5461 1.2669 -0.0012 41 1 0.8913 -2.5467 0.5136 42 1 2.5846 -3.0955 0.5129 43 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892788688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:53 Heat of formation + Delta-G solvation = -40.636563 kcal Electronic energy + Delta-G solvation = -24662.979162 eV Core-core repulsion = 21028.023644 eV Total energy + Delta-G solvation = -3634.955518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93184 -39.78372 -37.83632 -35.78626 -33.96421 -32.18726 -31.91032 -31.33085 -29.86354 -27.62774 -26.79016 -24.58238 -23.56771 -23.40771 -22.22105 -20.70170 -20.29915 -18.95256 -17.47918 -17.20024 -16.82729 -16.45804 -16.17924 -15.33437 -14.97855 -14.69977 -14.58554 -14.45743 -14.20811 -13.96706 -13.55358 -13.41239 -13.14981 -12.83222 -12.68096 -12.57608 -12.48718 -12.14882 -11.88405 -11.84235 -11.60177 -11.56563 -11.22310 -11.15599 -10.96163 -10.78182 -10.46151 -10.44403 -10.33561 -10.02605 -9.97533 -9.84383 -8.76785 -8.68447 -8.11633 -8.03295 -6.39076 -4.47314 1.42714 1.87666 2.18311 2.66399 2.74320 3.13610 3.21888 3.25509 3.37078 3.63153 4.17594 4.19999 4.26664 4.40183 4.57807 4.81356 4.84473 4.94981 4.98365 5.05105 5.11049 5.18137 5.20913 5.31179 5.34547 5.38131 5.47849 5.53958 5.58600 5.64963 5.80870 5.89842 5.95662 5.97812 6.32942 6.41880 6.66458 6.74208 6.83319 7.09271 7.48700 7.67600 7.70881 8.13742 8.30720 8.58586 9.20116 10.69144 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.028556 B = 0.002213 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.304628 B =12649.485850 C =12841.032696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.173 3.827 3 C -0.319 4.319 4 C 0.551 3.449 5 O -0.530 6.530 6 O -0.355 6.355 7 C 0.076 3.924 8 C -0.095 4.095 9 C -0.118 4.118 10 C -0.077 4.077 11 S -0.277 6.277 12 C -0.078 4.078 13 C -0.116 4.116 14 C 0.080 3.920 15 N -0.297 5.297 16 N -0.310 5.310 17 C 0.250 3.750 18 C -0.542 4.542 19 H 0.066 0.934 20 C 0.068 3.932 21 N -0.888 5.888 22 Si 0.909 3.091 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.184 0.816 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 22.601 2.625 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.035 3.965 3 C -0.333 4.333 4 C 0.399 3.601 5 O -0.421 6.421 6 O -0.272 6.272 7 C 0.002 3.998 8 C -0.113 4.113 9 C -0.157 4.157 10 C -0.226 4.226 11 S -0.051 6.051 12 C -0.226 4.226 13 C -0.155 4.155 14 C -0.107 4.107 15 N -0.116 5.116 16 N -0.086 5.086 17 C 0.133 3.867 18 C -0.580 4.580 19 H 0.085 0.915 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.201 0.799 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.660 22.111 3.290 22.835 hybrid contribution -0.980 -0.633 -1.657 2.027 sum 3.679 21.478 1.633 21.852 Atomic orbital electron populations 1.20667 0.86595 1.05094 1.03539 1.21459 0.94989 0.86428 0.93659 1.18833 0.93785 0.89296 1.31343 1.20036 0.83362 0.84925 0.71785 1.90759 1.18004 1.84554 1.48767 1.86509 1.39971 1.15587 1.85163 1.22907 0.95805 0.78400 1.02686 1.21172 0.96878 0.93577 0.99694 1.21775 0.94529 1.01848 0.97556 1.23477 1.00542 0.92492 1.06041 1.86937 1.61589 1.12548 1.44021 1.23407 0.97572 1.03568 0.98024 1.21692 0.97356 0.92808 1.03686 1.23900 0.96597 0.92127 0.98104 1.77214 0.98304 1.12351 1.23752 1.49435 1.02599 1.08312 1.48281 1.19915 0.96547 0.70648 0.99610 1.21285 1.47684 0.98133 0.90925 0.91537 1.24933 0.94385 0.95959 0.98383 1.69922 1.44414 1.07115 1.31104 0.86258 0.77992 0.78892 0.83332 1.19500 1.20514 1.20512 0.90177 0.88685 0.89476 0.91200 0.91174 0.89786 0.90559 0.89311 0.89610 0.87610 0.89656 0.87586 0.90225 0.90092 0.79899 0.92426 0.92267 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.34 36.01 0.34 -1.40 16 2 C 0.17 3.42 7.01 -81.59 -0.57 2.85 16 3 C -0.32 -5.84 6.13 -105.08 -0.64 -6.48 16 4 C 0.55 9.15 7.95 34.41 0.27 9.42 16 5 O -0.53 -9.51 14.63 -19.28 -0.28 -9.80 16 6 O -0.36 -4.80 9.36 -40.64 -0.38 -5.18 16 7 C 0.08 0.79 4.82 37.16 0.18 0.97 16 8 C -0.09 -0.75 2.18 -91.04 -0.20 -0.94 16 9 C -0.12 -0.93 5.03 -26.90 -0.14 -1.06 16 10 C -0.08 -0.57 6.45 37.21 0.24 -0.33 16 11 S -0.28 -2.33 22.33 -107.50 -2.40 -4.73 16 12 C -0.08 -0.49 6.45 37.21 0.24 -0.25 16 13 C -0.12 -0.75 5.05 -26.89 -0.14 -0.88 16 14 C 0.08 1.42 11.87 -16.97 -0.20 1.22 16 15 N -0.30 -6.34 12.50 30.87 0.39 -5.95 16 16 N -0.31 -6.87 3.56 -57.77 -0.21 -7.08 16 17 C 0.25 6.06 5.78 -5.20 -0.03 6.03 16 18 C -0.54 -14.29 9.39 -34.44 -0.32 -14.62 16 19 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -24.12 13.29 55.43 0.74 -23.39 16 22 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.09 1.58 6.51 -51.93 -0.34 1.25 16 28 H 0.09 1.55 7.70 -51.93 -0.40 1.15 16 29 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.09 0.77 7.48 -51.92 -0.39 0.38 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.44 8.05 -51.93 -0.42 0.02 16 39 H 0.08 0.53 8.06 -51.93 -0.42 0.12 16 40 H 0.18 2.52 8.06 -52.49 -0.42 2.09 16 41 H 0.06 1.38 7.62 -51.93 -0.40 0.98 16 42 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -29.40 370.21 -9.20 -38.60 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.54 Total: 0.29 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.07 Total: -3.79 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.92 Total: -36.42 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.66 Total: -14.97 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.40 Total: -4.73 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.40 -9.20 -38.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892788688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.041 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds