Wall clock time and date at job start Tue Mar 31 2020 13:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46730 * 180.02562 * 7 6 4 9 9 C 1.52581 * 109.22862 * 296.23243 * 8 7 6 10 10 C 1.53096 * 109.95578 * 169.00229 * 9 8 7 11 11 S 1.81748 * 108.84109 * 63.03147 * 10 9 8 12 12 C 1.81749 * 102.21830 * 306.73126 * 11 10 9 13 13 C 1.52586 * 109.22547 * 174.99923 * 8 7 6 14 14 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 15 15 N 1.30427 * 108.01038 * 359.72043 * 14 3 2 16 16 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 17 17 C 1.46491 * 125.74900 * 359.97341 * 16 2 1 18 18 C 1.50702 * 109.46957 * 90.00099 * 17 16 2 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 27 27 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 28 28 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 29 29 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 30 30 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 31 31 H 1.08999 * 109.22421 * 55.59833 * 8 7 6 32 32 H 1.08992 * 109.39447 * 289.15837 * 9 8 7 33 33 H 1.09007 * 109.38872 * 48.85798 * 9 8 7 34 34 H 1.09004 * 109.57957 * 303.21928 * 10 9 8 35 35 H 1.09004 * 109.57310 * 182.83743 * 10 9 8 36 36 H 1.08996 * 109.57768 * 293.45489 * 12 11 10 37 37 H 1.09002 * 109.57549 * 173.07391 * 12 11 10 38 38 H 1.08996 * 109.39023 * 311.14336 * 13 8 7 39 39 H 1.09000 * 109.38971 * 70.94792 * 13 8 7 40 40 H 1.08000 * 125.99491 * 179.97438 * 14 3 2 41 41 H 1.09004 * 109.47166 * 330.00365 * 17 16 2 42 42 H 1.08994 * 109.47507 * 210.00071 * 17 16 2 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4745 5.8499 0.0029 9 6 4.2695 5.6805 1.2941 10 6 5.5927 6.4446 1.1972 11 16 5.2349 8.2177 1.0204 12 6 4.0978 8.2412 -0.3973 13 6 2.9430 7.2748 -0.1209 14 6 3.6599 0.6496 -0.0006 15 7 3.6340 -0.6544 0.0051 16 7 2.3015 -1.0818 -0.0005 17 6 1.8499 -2.4754 -0.0006 18 6 1.6945 -2.9530 -1.4214 19 1 1.9110 -2.2853 -2.2423 20 6 1.2819 -4.2443 -1.6735 21 7 1.0187 -5.0574 -0.6739 22 14 1.0967 -4.8386 -3.4346 23 1 1.4518 -3.7395 -4.3679 24 1 2.0006 -5.9942 -3.6647 25 1 -0.3090 -5.2549 -3.6715 26 1 -0.3633 -0.0006 1.0277 27 1 -0.3633 0.8902 -0.5133 28 1 -0.3633 -0.8897 -0.5143 29 1 1.6897 5.0353 -0.8860 30 1 1.6910 5.0334 0.8939 31 1 4.1213 5.6331 -0.8473 32 1 3.6882 6.0681 2.1306 33 1 4.4739 4.6222 1.4570 34 1 6.1527 6.0966 0.3291 35 1 6.1774 6.2784 2.1019 36 1 4.6286 7.9284 -1.2964 37 1 3.7058 9.2490 -0.5344 38 1 2.2262 7.3238 -0.9405 39 1 2.4498 7.5591 0.8087 40 1 4.5461 1.2669 -0.0012 41 1 0.8913 -2.5467 0.5136 42 1 2.5846 -3.0955 0.5129 43 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892788688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:53 Heat of formation + Delta-G solvation = -54.785137 kcal Electronic energy + Delta-G solvation = -24663.592690 eV Core-core repulsion = 21028.023644 eV Total energy + Delta-G solvation = -3635.569046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.42316 -40.99338 -38.65182 -36.88612 -35.83947 -33.90168 -32.87976 -32.46680 -30.71336 -29.27073 -28.32381 -25.74981 -25.00299 -24.12562 -23.48554 -21.72644 -21.35047 -20.45716 -18.92478 -18.66469 -17.91618 -17.62695 -17.28979 -16.89332 -16.28516 -16.04574 -15.56839 -15.51961 -15.06491 -14.99138 -14.62299 -14.46497 -14.32681 -14.08581 -13.73350 -13.70916 -13.63118 -13.52480 -13.39390 -13.14742 -12.99242 -12.73249 -12.44868 -12.34682 -12.31128 -11.94323 -11.85258 -11.81121 -11.53733 -11.27689 -11.21505 -10.77405 -10.60861 -10.32854 -9.66385 -8.67538 -8.39474 -6.55630 0.43505 0.86116 1.19097 1.36210 1.38253 1.43056 1.52211 1.62558 1.91600 2.24916 2.31983 2.93244 3.48258 3.64516 3.66314 3.70721 3.86886 4.01842 4.02648 4.16982 4.22942 4.27385 4.33130 4.40650 4.56258 4.58728 4.62644 4.69769 4.76125 4.77879 4.81149 4.88364 4.96444 4.98259 5.03069 5.10034 5.20669 5.29152 5.46668 5.48222 5.61539 5.72653 5.96487 6.53082 6.72851 6.91211 7.15759 8.68756 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.028556 B = 0.002213 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.304628 B =12649.485850 C =12841.032696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.160 3.840 3 C -0.322 4.322 4 C 0.559 3.441 5 O -0.544 6.544 6 O -0.348 6.348 7 C 0.072 3.928 8 C -0.086 4.086 9 C -0.116 4.116 10 C -0.068 4.068 11 S -0.318 6.318 12 C -0.067 4.067 13 C -0.112 4.112 14 C 0.098 3.902 15 N -0.336 5.336 16 N -0.334 5.334 17 C 0.266 3.734 18 C -0.556 4.556 19 H 0.052 0.948 20 C 0.025 3.975 21 N -0.915 5.915 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.274 1.274 25 H -0.268 1.268 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.224 0.776 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 24.251 1.682 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.023 3.977 3 C -0.335 4.335 4 C 0.406 3.594 5 O -0.436 6.436 6 O -0.265 6.265 7 C -0.001 4.001 8 C -0.105 4.105 9 C -0.155 4.155 10 C -0.216 4.216 11 S -0.093 6.093 12 C -0.215 4.215 13 C -0.151 4.151 14 C -0.089 4.089 15 N -0.155 5.155 16 N -0.110 5.110 17 C 0.147 3.853 18 C -0.594 4.594 19 H 0.071 0.929 20 C -0.177 4.177 21 N -0.553 5.553 22 Si 0.795 3.205 23 H -0.197 1.197 24 H -0.200 1.200 25 H -0.193 1.193 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.240 0.760 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.711 23.790 2.355 24.366 hybrid contribution -0.958 -0.986 -1.323 1.908 sum 3.753 22.804 1.032 23.133 Atomic orbital electron populations 1.20686 0.85196 1.04759 1.04600 1.21972 0.96108 0.86360 0.93240 1.19068 0.93804 0.90109 1.30532 1.19718 0.83349 0.84866 0.71467 1.90753 1.18683 1.84812 1.49393 1.86488 1.39099 1.16488 1.84414 1.23206 0.97076 0.76912 1.02955 1.21151 0.95904 0.93711 0.99742 1.21738 0.94825 1.01385 0.97523 1.23441 1.00294 0.91342 1.06550 1.87105 1.62693 1.13866 1.45600 1.23446 0.96837 1.04305 0.96940 1.21663 0.97567 0.91606 1.04251 1.24539 0.97793 0.91211 0.95373 1.77168 0.98234 1.14256 1.25881 1.49181 1.03391 1.07896 1.50555 1.19450 0.95554 0.71958 0.98304 1.21414 1.48074 0.98423 0.91493 0.92949 1.25717 0.93823 0.95933 1.02223 1.69998 1.44808 1.07557 1.32955 0.85301 0.78455 0.78181 0.78527 1.19711 1.19963 1.19304 0.88405 0.88008 0.90579 0.90813 0.91085 0.89526 0.90778 0.90027 0.89111 0.87165 0.88934 0.86346 0.88820 0.90194 0.75955 0.92697 0.94789 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 9.34 71.24 0.67 -2.56 16 2 C 0.16 6.32 7.01 42.17 0.30 6.61 16 3 C -0.32 -11.41 6.13 -20.16 -0.12 -11.53 16 4 C 0.56 17.54 7.95 70.20 0.56 18.10 16 5 O -0.54 -18.63 14.63 19.77 0.29 -18.34 16 6 O -0.35 -8.61 9.36 -56.67 -0.53 -9.14 16 7 C 0.07 1.33 4.82 71.98 0.35 1.68 16 8 C -0.09 -1.15 2.18 -11.07 -0.02 -1.18 16 9 C -0.12 -1.60 5.03 30.49 0.15 -1.45 16 10 C -0.07 -0.89 6.45 72.01 0.46 -0.42 16 11 S -0.32 -4.87 22.33 -56.49 -1.26 -6.14 16 12 C -0.07 -0.69 6.45 72.02 0.46 -0.23 16 13 C -0.11 -1.14 5.05 30.49 0.15 -0.99 16 14 C 0.10 3.35 11.87 85.67 1.02 4.37 16 15 N -0.34 -14.39 12.50 -56.25 -0.70 -15.09 16 16 N -0.33 -15.06 3.56 -336.67 -1.20 -16.26 16 17 C 0.27 13.34 5.78 85.64 0.50 13.84 16 18 C -0.56 -29.94 9.39 25.60 0.24 -29.70 16 19 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 20 C 0.02 1.30 5.46 84.66 0.46 1.77 16 21 N -0.92 -50.19 13.29 21.45 0.28 -49.91 16 22 Si 0.97 41.88 29.54 68.60 2.03 43.90 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.10 3.31 6.51 -2.39 -0.02 3.30 16 28 H 0.08 2.74 7.70 -2.39 -0.02 2.73 16 29 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 32 H 0.07 1.06 8.06 -2.39 -0.02 1.04 16 33 H 0.08 1.26 7.48 -2.38 -0.02 1.25 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.74 8.05 -2.39 -0.02 0.72 16 39 H 0.08 0.87 8.06 -2.39 -0.02 0.85 16 40 H 0.22 5.49 8.06 -2.91 -0.02 5.46 16 41 H 0.06 2.73 7.62 -2.38 -0.02 2.71 16 42 H 0.03 1.84 8.14 -2.39 -0.02 1.83 16 43 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -63.02 370.21 5.08 -57.94 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.00 Total: 14.72 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.17 Total: -1.69 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -1.62 Total: -81.25 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.24 Total: -27.48 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -1.26 Total: -6.14 kcal Total: -63.02 5.08 -57.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892788688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.158 kcal (2) G-P(sol) polarization free energy of solvation -63.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds