Wall clock time and date at job start Tue Mar 31 2020 13:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35782 * 117.00047 * 2 1 4 4 C 1.38020 * 123.47147 * 0.18064 * 3 2 1 5 5 C 1.33610 * 115.09004 * 180.25736 * 4 3 2 6 6 C 1.50700 * 124.43093 * 179.79132 * 5 4 3 7 7 S 1.70577 * 111.14311 * 359.76496 * 5 4 3 8 8 C 1.37276 * 123.47410 * 180.02562 * 3 2 1 9 9 C 1.41719 * 125.47038 * 0.02977 * 8 3 2 10 10 O 1.21773 * 120.00413 * 359.72125 * 9 8 3 11 11 N 1.34786 * 119.99589 * 179.97438 * 9 8 3 12 12 C 1.46497 * 119.99732 * 179.72633 * 11 9 8 13 13 H 1.08994 * 109.47217 * 35.00282 * 12 11 9 14 14 C 1.53001 * 109.47313 * 275.00103 * 12 11 9 15 15 C 1.53002 * 109.47089 * 155.00468 * 12 11 9 16 16 C 1.53951 * 113.73795 * 278.74047 * 15 12 11 17 17 N 1.47815 * 86.03245 * 222.08094 * 16 15 12 18 18 C 1.36934 * 134.45489 * 204.63928 * 17 16 15 19 19 H 1.07995 * 120.00160 * 179.86915 * 18 17 16 20 20 C 1.38821 * 120.00044 * 359.87594 * 18 17 16 21 21 N 1.31620 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00064 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47074 * 59.99639 * 22 20 18 24 24 H 1.48500 * 109.47253 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47372 * 299.99969 * 22 20 18 26 26 C 1.47584 * 91.05237 * 24.54976 * 17 16 15 27 27 H 1.09000 * 109.46620 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46842 * 300.00156 * 1 2 3 29 29 H 1.09006 * 109.46625 * 60.00315 * 1 2 3 30 30 H 1.08001 * 122.46033 * 0.02639 * 4 3 2 31 31 H 1.09008 * 109.47202 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46517 * 299.99484 * 6 5 4 33 33 H 1.08993 * 109.47459 * 60.00237 * 6 5 4 34 34 H 0.97000 * 119.99685 * 359.73058 * 11 9 8 35 35 H 1.09002 * 109.47065 * 60.00129 * 14 12 11 36 36 H 1.08990 * 109.47355 * 180.02562 * 14 12 11 37 37 H 1.09008 * 109.47263 * 300.00357 * 14 12 11 38 38 H 1.08997 * 112.94496 * 50.32915 * 15 12 11 39 39 H 1.08990 * 113.76920 * 336.34565 * 16 15 12 40 40 H 1.09000 * 113.76774 * 107.74554 * 16 15 12 41 41 H 0.96998 * 119.99606 * 179.97438 * 21 20 18 42 42 H 1.08992 * 113.76901 * 221.14904 * 26 17 16 43 43 H 1.09003 * 113.86649 * 89.76375 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3652 2.4108 0.0036 5 6 2.1388 3.5001 -0.0024 6 6 1.6187 4.9145 -0.0046 7 16 3.7922 3.0806 -0.0067 8 6 3.4094 1.3646 -0.0005 9 6 4.3567 0.3105 -0.0017 10 8 3.9794 -0.8473 0.0028 11 7 5.6754 0.5895 -0.0026 12 6 6.6546 -0.5001 0.0022 13 1 6.2715 -1.3354 -0.5838 14 6 6.9017 -0.9574 1.4412 15 6 7.9680 -0.0081 -0.6092 16 6 7.9757 -0.0143 -2.1486 17 7 9.3480 -0.5521 -2.0374 18 6 10.4488 -0.5476 -2.8519 19 1 11.3623 -1.0237 -2.5277 20 6 10.3905 0.0690 -4.0942 21 7 9.2770 0.6489 -4.4894 22 14 11.8923 0.0757 -5.2050 23 1 12.2839 -1.3226 -5.5165 24 1 11.5723 0.7922 -6.4658 25 1 13.0145 0.7622 -4.5162 26 6 9.0563 -1.0934 -0.6957 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 0.2866 2.4660 0.0072 31 1 2.4579 5.6102 -0.0102 32 1 1.0078 5.0756 -0.8928 33 1 1.0145 5.0808 0.8872 34 1 5.9759 1.5118 -0.0064 35 1 5.9660 -1.3079 1.8768 36 1 7.6305 -1.7677 1.4449 37 1 7.2848 -0.1219 2.0273 38 1 8.3157 0.9281 -0.1724 39 1 7.2644 -0.7130 -2.5887 40 1 7.9269 0.9802 -2.5922 41 1 9.2364 1.0801 -5.3574 42 1 9.8686 -0.9590 0.0184 43 1 8.6631 -2.1100 -0.7063 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970525442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:38 Heat of formation + Delta-G solvation = -10.722979 kcal Electronic energy + Delta-G solvation = -25029.770645 eV Core-core repulsion = 21396.112278 eV Total energy + Delta-G solvation = -3633.658368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42637 -40.55056 -39.46751 -37.35877 -36.11230 -34.18874 -33.08490 -31.64691 -29.38195 -28.87644 -27.82775 -26.51094 -25.62023 -24.21342 -23.38393 -21.88912 -21.17595 -20.13636 -19.26207 -18.75401 -18.07194 -17.28032 -16.99123 -16.89955 -16.81565 -15.84087 -15.73762 -15.65779 -15.10606 -14.81895 -14.77317 -14.63060 -14.53450 -14.08594 -13.55568 -13.45885 -13.27599 -13.12357 -13.09161 -13.02402 -12.87542 -12.65690 -12.54530 -12.42403 -12.01636 -11.87935 -11.79664 -11.73695 -11.48920 -11.25890 -10.95064 -10.84100 -10.10873 -9.65662 -9.05510 -8.92154 -7.89289 -5.23606 -0.52978 0.42093 0.77917 1.30867 1.45030 1.49250 1.55263 2.24471 2.32277 2.48169 2.50706 3.30623 3.37976 3.58633 3.74217 3.92303 4.06031 4.19345 4.27380 4.29897 4.35980 4.37205 4.49154 4.58255 4.64189 4.71016 4.74037 4.75899 4.82392 4.85847 4.92206 5.00774 5.06140 5.13307 5.23995 5.25655 5.32565 5.48524 5.56470 5.66243 5.93342 6.27363 6.57832 6.91659 7.27886 7.61232 8.57506 9.27449 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.002975 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.059889 B = 9409.425600 C =10134.539501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.309 6.309 3 C 0.189 3.811 4 C -0.232 4.232 5 C -0.143 4.143 6 C -0.090 4.090 7 S 0.250 5.750 8 C -0.379 4.379 9 C 0.591 3.409 10 O -0.576 6.576 11 N -0.715 5.715 12 C 0.161 3.839 13 H 0.057 0.943 14 C -0.148 4.148 15 C -0.110 4.110 16 C 0.168 3.832 17 N -0.643 5.643 18 C -0.238 4.238 19 H 0.086 0.914 20 C -0.069 4.069 21 N -0.955 5.955 22 Si 0.981 3.019 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.132 3.868 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.178 0.822 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.403 0.597 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.000 1.000 40 H 0.043 0.957 41 H 0.248 0.752 42 H 0.068 0.932 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.627 10.177 14.413 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.221 6.221 3 C 0.127 3.873 4 C -0.264 4.264 5 C -0.264 4.264 6 C -0.148 4.148 7 S 0.516 5.484 8 C -0.498 4.498 9 C 0.381 3.619 10 O -0.459 6.459 11 N -0.367 5.367 12 C 0.056 3.944 13 H 0.075 0.925 14 C -0.206 4.206 15 C -0.130 4.130 16 C 0.042 3.958 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.104 0.896 20 C -0.262 4.262 21 N -0.604 5.604 22 Si 0.809 3.191 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.007 3.993 27 H 0.129 0.871 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.195 0.805 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.238 0.762 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.018 0.982 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.250 10.023 14.139 25.168 hybrid contribution -0.773 -0.822 -1.213 1.657 sum -19.022 9.201 12.926 24.771 Atomic orbital electron populations 1.23477 0.75983 1.05617 1.02924 1.86293 1.23607 1.25343 1.86823 1.18652 0.90302 0.86257 0.92059 1.20084 1.03269 0.89344 1.13694 1.24509 0.98266 1.02122 1.01485 1.20664 1.02583 0.86349 1.05215 1.82931 1.03869 0.92775 1.68829 1.22749 0.95630 0.99673 1.31752 1.15917 0.82228 0.87829 0.75886 1.90803 1.80292 1.22119 1.52691 1.45872 1.05028 1.10249 1.75503 1.20829 0.86914 0.89109 0.97570 0.92472 1.22037 1.01651 1.02407 0.94476 1.23456 0.93680 1.00214 0.95662 1.22160 0.84746 0.96642 0.92238 1.46424 1.08716 1.64578 1.17257 1.19445 0.90260 1.29846 0.97078 0.89644 1.25682 1.00376 1.01065 0.99102 1.70026 1.27431 1.42086 1.20812 0.85114 0.78650 0.77617 0.77707 1.20598 1.22038 1.19762 1.22663 0.95023 0.95103 0.86535 0.87076 0.90569 0.91062 0.80508 0.89871 0.88364 0.87896 0.76160 0.93512 0.90416 0.90647 0.87644 0.98239 0.93867 0.94324 0.91402 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.94 113.37 1.13 1.35 16 2 O -0.31 -8.91 9.36 -74.36 -0.70 -9.60 16 3 C 0.19 5.08 6.70 21.99 0.15 5.22 16 4 C -0.23 -4.13 9.02 21.17 0.19 -3.94 16 5 C -0.14 -2.21 6.27 24.64 0.15 -2.06 16 6 C -0.09 -0.65 10.32 71.24 0.74 0.09 16 7 S 0.25 5.03 21.92 -56.49 -1.24 3.79 16 8 C -0.38 -11.27 6.28 22.90 0.14 -11.12 16 9 C 0.59 21.47 7.56 85.10 0.64 22.12 16 10 O -0.58 -25.47 15.50 12.17 0.19 -25.29 16 11 N -0.72 -23.27 5.06 -451.38 -2.29 -25.56 16 12 C 0.16 5.54 2.38 44.99 0.11 5.64 16 13 H 0.06 2.34 7.41 -2.39 -0.02 2.33 16 14 C -0.15 -4.15 9.31 71.98 0.67 -3.48 16 15 C -0.11 -4.16 3.47 -10.13 -0.04 -4.19 16 16 C 0.17 8.47 7.08 86.44 0.61 9.08 16 17 N -0.64 -34.39 3.70 -716.14 -2.65 -37.04 16 18 C -0.24 -13.80 10.70 84.04 0.90 -12.90 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 21 N -0.95 -59.51 11.39 21.65 0.25 -59.26 16 22 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 26 C 0.13 5.39 7.64 86.48 0.66 6.05 16 27 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 0.84 7.87 -2.39 -0.02 0.82 16 29 H 0.07 0.87 7.89 -2.38 -0.02 0.85 16 30 H 0.18 1.95 6.99 -2.91 -0.02 1.93 16 31 H 0.08 0.49 8.11 -2.38 -0.02 0.48 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.40 11.24 7.57 -92.71 -0.70 10.53 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 2.01 7.51 -2.39 -0.02 2.00 16 37 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.11 3.63 8.14 -2.39 -0.02 3.62 16 39 H 0.00 -0.01 7.99 -2.39 -0.02 -0.03 16 40 H 0.04 2.40 7.17 -2.39 -0.02 2.38 16 41 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 Total: -1.00 -82.11 369.74 2.43 -79.68 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.32 Total: 16.22 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.52 Total: 8.26 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -4.69 Total: -121.86 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.51 Total: -34.89 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.24 Total: 3.79 kcal Total: -82.11 2.43 -79.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970525442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.954 kcal (2) G-P(sol) polarization free energy of solvation -82.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds