Wall clock time and date at job start Tue Mar 31 2020 14:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36210 * 116.99685 * 2 1 4 4 C 1.34086 * 122.50174 * 0.02839 * 3 2 1 5 5 S 1.70602 * 110.97497 * 179.97438 * 4 3 2 6 6 C 1.75813 * 91.62154 * 359.97438 * 5 4 3 7 7 C 1.46550 * 125.42517 * 179.97438 * 6 5 4 8 8 O 1.21714 * 119.99770 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00321 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00270 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.63582 * 31.86280 * 10 9 7 12 12 C 1.54319 * 110.72247 * 268.52356 * 10 9 7 13 13 N 1.47027 * 107.27309 * 263.83170 * 12 10 9 14 14 C 1.36925 * 125.65008 * 181.02373 * 13 12 10 15 15 H 1.08009 * 120.00183 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.00331 * 0.04004 * 14 13 12 17 17 N 1.31618 * 119.99693 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00328 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47226 * 89.99882 * 18 16 14 20 20 H 1.48503 * 109.47081 * 209.99831 * 18 16 14 21 21 H 1.48501 * 109.47398 * 329.99632 * 18 16 14 22 22 C 1.47429 * 108.69801 * 1.05413 * 13 12 10 23 23 C 1.54906 * 104.83486 * 335.87578 * 22 13 12 24 24 C 1.53005 * 111.00371 * 278.93380 * 23 22 13 25 25 C 1.53002 * 111.00125 * 155.08248 * 23 22 13 26 26 C 1.36735 * 109.14557 * 359.76065 * 6 5 4 27 27 H 1.09002 * 109.47382 * 59.99870 * 1 2 3 28 28 H 1.09001 * 109.46938 * 299.99856 * 1 2 3 29 29 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.07998 * 124.51307 * 0.02562 * 4 3 2 31 31 H 0.97005 * 119.99871 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.88277 * 23.24141 * 12 10 9 33 33 H 1.08995 * 109.88366 * 144.41074 * 12 10 9 34 34 H 0.96999 * 120.00209 * 180.02562 * 17 16 14 35 35 H 1.09003 * 110.36249 * 217.03452 * 22 13 12 36 36 H 1.09004 * 110.36365 * 94.71872 * 22 13 12 37 37 H 1.08993 * 109.46807 * 172.19763 * 24 23 22 38 38 H 1.08999 * 109.47109 * 292.20018 * 24 23 22 39 39 H 1.09000 * 109.47112 * 52.19700 * 24 23 22 40 40 H 1.08990 * 109.47259 * 307.80326 * 25 23 22 41 41 H 1.09005 * 109.47214 * 67.80559 * 25 23 22 42 42 H 1.09008 * 109.46912 * 187.79995 * 25 23 22 43 43 H 1.08007 * 123.37075 * 180.24278 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0473 1.2137 0.0000 4 6 1.3668 2.3690 0.0006 5 16 2.4293 3.7037 0.0011 6 6 3.8353 2.6480 0.0013 7 6 5.2316 3.0929 0.0013 8 8 6.1314 2.2733 0.0010 9 7 5.5194 4.4095 0.0016 10 6 6.9152 4.8543 0.0010 11 1 7.5440 4.1456 -0.5381 12 6 7.4250 5.0550 1.4436 13 7 7.2805 6.4828 1.7630 14 6 7.6392 7.0768 2.9434 15 1 7.4913 8.1379 3.0809 16 6 8.1931 6.3155 3.9634 17 7 8.3731 5.0225 3.7960 18 14 8.6818 7.1257 5.5740 19 1 7.5314 7.0950 6.5127 20 1 9.8268 6.3915 6.1701 21 1 9.0757 8.5348 5.3198 22 6 6.6846 7.1689 0.6021 23 6 7.0387 6.2743 -0.6120 24 6 8.4664 6.5420 -1.0926 25 6 6.0338 6.4701 -1.7490 26 6 3.4183 1.3458 0.0064 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2894 2.4445 0.0015 31 1 4.8023 5.0628 0.0014 32 1 6.8285 4.4586 2.1339 33 1 8.4735 4.7645 1.5101 34 1 8.7598 4.4903 4.5089 35 1 7.1208 8.1606 0.4826 36 1 5.6031 7.2407 0.7179 37 1 8.7375 5.8088 -1.8521 38 1 8.5249 7.5440 -1.5175 39 1 9.1539 6.4639 -0.2503 40 1 5.0217 6.3418 -1.3655 41 1 6.1419 7.4736 -2.1607 42 1 6.2221 5.7344 -2.5310 43 1 4.0961 0.5050 0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974918781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:10 Heat of formation + Delta-G solvation = -9.064915 kcal Electronic energy + Delta-G solvation = -25650.199721 eV Core-core repulsion = 22016.613253 eV Total energy + Delta-G solvation = -3633.586469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.12479 -39.63243 -37.96045 -35.82348 -33.89001 -33.04840 -30.69637 -29.75184 -28.24154 -27.87968 -26.81228 -25.62760 -24.57014 -23.16665 -21.33666 -20.08822 -19.67887 -18.84876 -18.30208 -17.26330 -16.69249 -16.08016 -16.02644 -15.80516 -14.84706 -14.68484 -14.41414 -14.05580 -13.90988 -13.78899 -13.31857 -13.14246 -12.90388 -12.86503 -12.54090 -12.06200 -11.97000 -11.88687 -11.67078 -11.37811 -11.17124 -11.10233 -11.05690 -10.97524 -10.76325 -10.39826 -10.26917 -10.02419 -9.87223 -9.74542 -9.62884 -9.01242 -8.62875 -8.49137 -8.14648 -6.81385 -5.67197 -3.02123 0.42387 1.35104 1.77558 2.34938 3.02486 3.40875 3.42020 3.46639 3.49252 3.56775 4.51713 4.71374 4.75976 4.88889 4.91572 5.05831 5.11310 5.20024 5.27667 5.30544 5.55226 5.59535 5.65277 5.80599 5.83574 5.92780 5.96455 6.02153 6.16769 6.20134 6.24421 6.38540 6.57210 6.61070 6.66883 6.69090 6.94196 7.02891 7.55744 7.63895 7.78422 7.88514 8.27183 8.47227 9.23687 9.84495 10.49768 11.43468 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.003609 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.767173 B = 7756.742199 C = 8729.035985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.105 3.895 4 C -0.347 4.347 5 S 0.225 5.775 6 C -0.223 4.223 7 C 0.586 3.414 8 O -0.524 6.524 9 N -0.702 5.702 10 C 0.124 3.876 11 H 0.093 0.907 12 C 0.174 3.826 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.918 5.918 18 Si 0.911 3.089 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.143 3.857 23 C -0.090 4.090 24 C -0.126 4.126 25 C -0.132 4.132 26 C -0.075 4.075 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.169 0.831 31 H 0.393 0.607 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.253 0.747 35 H 0.042 0.958 36 H 0.015 0.985 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.180 -3.471 -12.320 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.220 6.220 3 C 0.048 3.952 4 C -0.485 4.485 5 S 0.490 5.510 6 C -0.344 4.344 7 C 0.371 3.629 8 O -0.402 6.402 9 N -0.352 5.352 10 C 0.019 3.981 11 H 0.111 0.889 12 C 0.049 3.951 13 N -0.329 5.329 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.016 3.984 23 C -0.092 4.092 24 C -0.183 4.183 25 C -0.189 4.189 26 C -0.110 4.110 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.187 0.813 31 H 0.228 0.772 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.556 -2.728 -12.099 19.123 hybrid contribution -0.471 -0.816 1.061 1.419 sum -15.027 -3.544 -11.037 18.979 Atomic orbital electron populations 1.23029 0.78394 1.03882 1.01226 1.86121 1.21126 1.25247 1.89478 1.17550 0.91551 0.84669 1.01474 1.25011 1.05587 0.97540 1.20351 1.82933 0.92967 1.06508 1.68548 1.24604 0.97999 0.97323 1.14470 1.16775 0.85920 0.83031 0.77177 1.90845 1.46474 1.52952 1.49908 1.45867 1.09628 1.05749 1.73958 1.22572 0.80529 0.94611 1.00358 0.88896 1.21544 0.99857 0.85572 0.88155 1.44432 1.72717 1.03779 1.11938 1.19008 1.34652 0.92613 0.89554 0.90474 1.24810 1.01331 0.95765 0.98435 1.69955 1.49498 1.04453 1.32580 0.86143 0.77818 0.78165 0.83737 1.21713 1.21716 1.20755 1.21644 0.95407 0.94913 0.86392 1.22033 0.96388 0.95443 0.95298 1.21596 0.95144 1.00429 1.01151 1.21687 0.98196 1.01375 0.97691 1.19946 0.92788 0.97040 1.01197 0.92838 0.92758 0.88206 0.81334 0.77162 0.93284 0.92579 0.93675 0.93965 0.96766 0.93275 0.92829 0.91123 0.93200 0.92510 0.92748 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.93 101.05 1.00 1.22 16 2 O -0.31 -3.55 10.56 -20.41 -0.22 -3.77 16 3 C 0.10 1.31 6.61 -41.23 -0.27 1.04 16 4 C -0.35 -3.73 9.81 29.27 0.29 -3.44 16 5 S 0.22 2.56 22.15 -107.50 -2.38 0.18 16 6 C -0.22 -3.33 6.45 -36.78 -0.24 -3.57 16 7 C 0.59 10.60 7.78 -12.91 -0.10 10.50 16 8 O -0.52 -11.28 16.48 5.18 0.09 -11.20 16 9 N -0.70 -12.03 4.45 -53.38 -0.24 -12.26 16 10 C 0.12 2.36 2.59 -66.10 -0.17 2.19 16 11 H 0.09 1.83 7.45 -51.93 -0.39 1.44 16 12 C 0.17 4.26 4.79 -3.06 -0.01 4.25 16 13 N -0.60 -14.89 3.38 -170.07 -0.57 -15.46 16 14 C -0.23 -6.31 10.28 -15.06 -0.15 -6.46 16 15 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -27.31 10.31 55.49 0.57 -26.74 16 18 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C 0.14 2.79 6.12 -2.53 -0.02 2.77 16 23 C -0.09 -1.48 0.83 -152.36 -0.13 -1.61 16 24 C -0.13 -1.97 8.57 37.16 0.32 -1.66 16 25 C -0.13 -1.69 8.22 37.16 0.31 -1.38 16 26 C -0.08 -1.08 10.00 -40.31 -0.40 -1.48 16 27 H 0.05 0.32 7.84 -51.93 -0.41 -0.09 16 28 H 0.05 0.34 7.84 -51.93 -0.41 -0.06 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.17 1.35 6.96 -52.49 -0.37 0.98 16 31 H 0.39 5.94 6.22 -40.82 -0.25 5.68 16 32 H 0.05 1.38 7.41 -51.93 -0.38 1.00 16 33 H 0.06 1.55 7.38 -51.93 -0.38 1.16 16 34 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.01 0.28 7.98 -51.93 -0.41 -0.14 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 40 H 0.05 0.60 6.48 -51.93 -0.34 0.26 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.16 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -32.76 362.12 -8.25 -41.01 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.25 Total: 3.52 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 0.32 Total: 2.07 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.24 Total: -54.46 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.13 Total: -14.96 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.38 Total: 0.18 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.76 -8.25 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974918781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.940 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds