Wall clock time and date at job start Tue Mar 31 2020 14:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36210 * 116.99685 * 2 1 4 4 C 1.34086 * 122.50174 * 0.02839 * 3 2 1 5 5 S 1.70602 * 110.97497 * 179.97438 * 4 3 2 6 6 C 1.75813 * 91.62154 * 359.97438 * 5 4 3 7 7 C 1.46550 * 125.42517 * 179.97438 * 6 5 4 8 8 O 1.21714 * 119.99770 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00321 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00270 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.63582 * 31.86280 * 10 9 7 12 12 C 1.54319 * 110.72247 * 268.52356 * 10 9 7 13 13 N 1.47027 * 107.27309 * 263.83170 * 12 10 9 14 14 C 1.36925 * 125.65008 * 181.02373 * 13 12 10 15 15 H 1.08009 * 120.00183 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.00331 * 0.04004 * 14 13 12 17 17 N 1.31618 * 119.99693 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00328 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47226 * 89.99882 * 18 16 14 20 20 H 1.48503 * 109.47081 * 209.99831 * 18 16 14 21 21 H 1.48501 * 109.47398 * 329.99632 * 18 16 14 22 22 C 1.47429 * 108.69801 * 1.05413 * 13 12 10 23 23 C 1.54906 * 104.83486 * 335.87578 * 22 13 12 24 24 C 1.53005 * 111.00371 * 278.93380 * 23 22 13 25 25 C 1.53002 * 111.00125 * 155.08248 * 23 22 13 26 26 C 1.36735 * 109.14557 * 359.76065 * 6 5 4 27 27 H 1.09002 * 109.47382 * 59.99870 * 1 2 3 28 28 H 1.09001 * 109.46938 * 299.99856 * 1 2 3 29 29 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.07998 * 124.51307 * 0.02562 * 4 3 2 31 31 H 0.97005 * 119.99871 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.88277 * 23.24141 * 12 10 9 33 33 H 1.08995 * 109.88366 * 144.41074 * 12 10 9 34 34 H 0.96999 * 120.00209 * 180.02562 * 17 16 14 35 35 H 1.09003 * 110.36249 * 217.03452 * 22 13 12 36 36 H 1.09004 * 110.36365 * 94.71872 * 22 13 12 37 37 H 1.08993 * 109.46807 * 172.19763 * 24 23 22 38 38 H 1.08999 * 109.47109 * 292.20018 * 24 23 22 39 39 H 1.09000 * 109.47112 * 52.19700 * 24 23 22 40 40 H 1.08990 * 109.47259 * 307.80326 * 25 23 22 41 41 H 1.09005 * 109.47214 * 67.80559 * 25 23 22 42 42 H 1.09008 * 109.46912 * 187.79995 * 25 23 22 43 43 H 1.08007 * 123.37075 * 180.24278 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0473 1.2137 0.0000 4 6 1.3668 2.3690 0.0006 5 16 2.4293 3.7037 0.0011 6 6 3.8353 2.6480 0.0013 7 6 5.2316 3.0929 0.0013 8 8 6.1314 2.2733 0.0010 9 7 5.5194 4.4095 0.0016 10 6 6.9152 4.8543 0.0010 11 1 7.5440 4.1456 -0.5381 12 6 7.4250 5.0550 1.4436 13 7 7.2805 6.4828 1.7630 14 6 7.6392 7.0768 2.9434 15 1 7.4913 8.1379 3.0809 16 6 8.1931 6.3155 3.9634 17 7 8.3731 5.0225 3.7960 18 14 8.6818 7.1257 5.5740 19 1 7.5314 7.0950 6.5127 20 1 9.8268 6.3915 6.1701 21 1 9.0757 8.5348 5.3198 22 6 6.6846 7.1689 0.6021 23 6 7.0387 6.2743 -0.6120 24 6 8.4664 6.5420 -1.0926 25 6 6.0338 6.4701 -1.7490 26 6 3.4183 1.3458 0.0064 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2894 2.4445 0.0015 31 1 4.8023 5.0628 0.0014 32 1 6.8285 4.4586 2.1339 33 1 8.4735 4.7645 1.5101 34 1 8.7598 4.4903 4.5089 35 1 7.1208 8.1606 0.4826 36 1 5.6031 7.2407 0.7179 37 1 8.7375 5.8088 -1.8521 38 1 8.5249 7.5440 -1.5175 39 1 9.1539 6.4639 -0.2503 40 1 5.0217 6.3418 -1.3655 41 1 6.1419 7.4736 -2.1607 42 1 6.2221 5.7344 -2.5310 43 1 4.0961 0.5050 0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974918781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:09 Heat of formation + Delta-G solvation = -31.335617 kcal Electronic energy + Delta-G solvation = -25651.165452 eV Core-core repulsion = 22016.613253 eV Total energy + Delta-G solvation = -3634.552199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39551 -40.74179 -39.45552 -36.81049 -35.71337 -34.58778 -32.59713 -30.95437 -29.58066 -28.74489 -28.03845 -27.40608 -25.86482 -24.65137 -22.67314 -21.82258 -20.91969 -20.06188 -19.56332 -18.67554 -18.11894 -17.38938 -17.20813 -16.81406 -16.62749 -15.98906 -15.69184 -15.52239 -15.48638 -15.19981 -14.79862 -14.16918 -14.03994 -13.82098 -13.73121 -13.69638 -13.44575 -13.13176 -12.95289 -12.83352 -12.66604 -12.58877 -12.57164 -12.12482 -12.05915 -11.91492 -11.85216 -11.75226 -11.54636 -11.31530 -11.24265 -10.73187 -10.19261 -9.92434 -9.04631 -8.87870 -7.81825 -5.18430 -0.64709 0.36116 0.81529 1.30660 1.45261 1.47311 1.56139 1.91541 2.10724 2.49393 2.51871 3.36670 3.47956 3.68972 3.75754 3.93794 3.96657 4.07485 4.10117 4.39417 4.39557 4.42593 4.50979 4.55069 4.69837 4.75853 4.81940 4.86509 4.89151 4.96142 5.01085 5.04094 5.13184 5.17857 5.26725 5.36354 5.47786 5.57146 5.68433 5.74093 6.18787 6.25164 6.41387 7.06159 7.10910 7.79272 8.43670 9.27468 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.003609 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.767173 B = 7756.742199 C = 8729.035985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.088 3.912 4 C -0.325 4.325 5 S 0.284 5.716 6 C -0.264 4.264 7 C 0.584 3.416 8 O -0.572 6.572 9 N -0.692 5.692 10 C 0.136 3.864 11 H 0.083 0.917 12 C 0.192 3.808 13 N -0.619 5.619 14 C -0.234 4.234 15 H 0.089 0.911 16 C -0.071 4.071 17 N -0.954 5.954 18 Si 0.977 3.023 19 H -0.288 1.288 20 H -0.300 1.300 21 H -0.264 1.264 22 C 0.137 3.863 23 C -0.075 4.075 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.081 4.081 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.205 0.795 31 H 0.406 0.594 32 H 0.000 1.000 33 H 0.009 0.991 34 H 0.243 0.757 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.335 -1.305 -13.974 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.032 3.968 4 C -0.463 4.463 5 S 0.551 5.449 6 C -0.385 4.385 7 C 0.371 3.629 8 O -0.454 6.454 9 N -0.343 5.343 10 C 0.030 3.970 11 H 0.101 0.899 12 C 0.065 3.935 13 N -0.345 5.345 14 C -0.363 4.363 15 H 0.106 0.894 16 C -0.263 4.263 17 N -0.603 5.603 18 Si 0.806 3.194 19 H -0.215 1.215 20 H -0.227 1.227 21 H -0.189 1.189 22 C 0.012 3.988 23 C -0.076 4.076 24 C -0.181 4.181 25 C -0.183 4.183 26 C -0.117 4.117 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.222 0.778 31 H 0.243 0.757 32 H 0.018 0.982 33 H 0.027 0.973 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.767 -0.494 -13.789 22.495 hybrid contribution 0.390 -1.495 1.563 2.198 sum -17.377 -1.989 -12.226 21.340 Atomic orbital electron populations 1.23368 0.76019 1.05681 1.02432 1.86105 1.23592 1.24876 1.89605 1.17423 0.90848 0.85813 1.02717 1.25456 1.07224 0.96572 1.17050 1.82647 0.90352 1.05133 1.66772 1.24281 0.97684 0.98764 1.17755 1.17244 0.87073 0.82700 0.75841 1.90807 1.48437 1.54053 1.52054 1.45664 1.09019 1.05942 1.73659 1.22201 0.81477 0.96553 0.96770 0.89871 1.21097 0.96517 0.85214 0.90648 1.44671 1.72797 1.04197 1.12877 1.19472 1.33224 0.93180 0.90450 0.89368 1.25676 1.02328 0.96286 1.02028 1.70231 1.51032 1.06005 1.33029 0.85089 0.76914 0.77840 0.79560 1.21505 1.22705 1.18876 1.21923 0.95870 0.95440 0.85578 1.22017 0.98200 0.91890 0.95539 1.21593 0.93700 1.02639 1.00168 1.21675 0.97206 1.03322 0.96126 1.20013 0.94064 0.96605 1.01006 0.91240 0.91731 0.86394 0.77844 0.75692 0.98152 0.97258 0.94821 0.92982 0.95064 0.91598 0.90091 0.95011 0.92053 0.89913 0.91665 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.93 113.37 1.13 1.34 16 2 O -0.33 -7.15 10.56 -95.95 -1.01 -8.16 16 3 C 0.09 2.09 6.61 21.20 0.14 2.24 16 4 C -0.33 -5.91 9.81 66.87 0.66 -5.26 16 5 S 0.28 5.72 22.15 -56.49 -1.25 4.47 16 6 C -0.26 -7.92 6.45 24.09 0.16 -7.77 16 7 C 0.58 21.93 7.78 86.41 0.67 22.60 16 8 O -0.57 -26.41 16.48 -4.39 -0.07 -26.48 16 9 N -0.69 -23.88 4.45 -441.00 -1.96 -25.85 16 10 C 0.14 5.32 2.59 46.18 0.12 5.44 16 11 H 0.08 3.44 7.45 -2.39 -0.02 3.43 16 12 C 0.19 9.98 4.79 86.73 0.42 10.39 16 13 N -0.62 -31.29 3.38 -691.97 -2.34 -33.63 16 14 C -0.23 -13.04 10.28 84.04 0.86 -12.18 16 15 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 16 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 17 N -0.95 -60.17 10.31 21.65 0.22 -59.94 16 18 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 22 C 0.14 5.13 6.12 86.85 0.53 5.66 16 23 C -0.07 -2.35 0.83 -50.79 -0.04 -2.39 16 24 C -0.12 -3.72 8.57 71.98 0.62 -3.11 16 25 C -0.13 -2.73 8.22 71.98 0.59 -2.14 16 26 C -0.08 -2.37 10.00 21.80 0.22 -2.15 16 27 H 0.07 0.57 7.84 -2.39 -0.02 0.55 16 28 H 0.06 0.60 7.84 -2.39 -0.02 0.59 16 29 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.20 2.21 6.96 -2.91 -0.02 2.19 16 31 H 0.41 11.67 6.22 -92.70 -0.58 11.10 16 32 H 0.00 0.02 7.41 -2.39 -0.02 0.00 16 33 H 0.01 0.56 7.38 -2.39 -0.02 0.54 16 34 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.05 1.87 8.05 -2.39 -0.02 1.85 16 36 H 0.03 1.10 7.98 -2.39 -0.02 1.08 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.03 1.19 7.91 -2.39 -0.02 1.17 16 40 H 0.06 1.20 6.48 -2.39 -0.02 1.19 16 41 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -77.74 362.12 2.59 -75.15 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.45 Total: 16.60 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.53 Total: 9.04 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -4.08 Total: -119.42 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.09 Total: -34.65 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.25 Total: 4.47 kcal Total: -77.74 2.59 -75.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974918781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.811 kcal (2) G-P(sol) polarization free energy of solvation -77.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds