Wall clock time and date at job start Tue Mar 31 2020 14:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46978 * 2 1 4 4 C 1.50696 * 109.47246 * 120.00265 * 2 1 3 5 5 C 1.37477 * 123.35280 * 305.31066 * 4 2 1 6 6 C 1.33811 * 115.10403 * 179.97438 * 5 4 2 7 7 S 1.70623 * 110.95243 * 0.02562 * 6 5 4 8 8 C 1.36644 * 123.35200 * 125.31173 * 4 2 1 9 9 C 1.46586 * 125.45874 * 359.73602 * 8 4 2 10 10 O 1.21705 * 119.99594 * 354.35205 * 9 8 4 11 11 N 1.34771 * 120.00004 * 174.35528 * 9 8 4 12 12 C 1.46508 * 119.99994 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.88481 * 34.29864 * 12 11 9 14 14 C 1.54908 * 111.00286 * 270.41743 * 12 11 9 15 15 N 1.47466 * 104.80847 * 204.95076 * 14 12 11 16 16 C 1.36937 * 125.62783 * 204.14276 * 15 14 12 17 17 H 1.08004 * 119.99976 * 359.93910 * 16 15 14 18 18 C 1.38806 * 120.00470 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00497 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46941 * 60.00583 * 20 18 16 22 22 H 1.48504 * 109.47403 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47424 * 300.00905 * 20 18 16 24 24 C 1.47014 * 108.72853 * 24.06871 * 15 14 12 25 25 C 1.54331 * 107.27032 * 358.97597 * 24 15 14 26 26 H 1.08998 * 110.71976 * 96.16403 * 25 24 15 27 27 O 1.42894 * 110.87673 * 219.37493 * 25 24 15 28 28 H 1.08996 * 109.46845 * 300.00025 * 1 2 3 29 29 H 1.09007 * 109.47200 * 59.99497 * 1 2 3 30 30 H 1.08996 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47125 * 240.00597 * 2 1 3 32 32 H 1.08993 * 109.47489 * 300.00081 * 3 2 1 33 33 H 1.09003 * 109.46705 * 60.00340 * 3 2 1 34 34 H 1.09006 * 109.47031 * 179.97438 * 3 2 1 35 35 H 1.07999 * 122.44452 * 359.97438 * 5 4 2 36 36 H 1.07998 * 124.52355 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00151 * 359.97438 * 11 9 8 38 38 H 1.09005 * 110.36256 * 323.75536 * 14 12 11 39 39 H 1.08999 * 110.36443 * 86.07414 * 14 12 11 40 40 H 0.96995 * 120.00488 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.88763 * 239.56337 * 24 15 14 42 42 H 1.08995 * 109.88526 * 118.38850 * 24 15 14 43 43 H 0.96701 * 113.99902 * 293.60924 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6585 -0.3659 2.5077 6 6 2.2042 -1.1077 3.4785 7 16 3.2364 -2.3004 2.8280 8 6 2.9048 -1.7612 1.1876 9 6 3.4688 -2.3491 -0.0311 10 8 3.0883 -1.9685 -1.1227 11 7 4.4086 -3.3111 0.0573 12 6 4.9726 -3.8982 -1.1607 13 1 5.0425 -3.1544 -1.9543 14 6 4.1455 -5.1247 -1.6203 15 7 5.0898 -5.9447 -2.4018 16 6 4.7478 -6.8480 -3.3724 17 1 3.7086 -7.0073 -3.6199 18 6 5.7365 -7.5595 -4.0379 19 7 7.0029 -7.3664 -3.7355 20 14 5.2700 -8.7923 -5.3615 21 1 4.5352 -8.0969 -6.4487 22 1 6.4999 -9.4147 -5.9140 23 1 4.4038 -9.8456 -4.7738 24 6 6.4588 -5.6307 -1.9677 25 6 6.3559 -4.5421 -0.8786 26 1 6.3781 -4.9880 0.1157 27 8 7.4009 -3.5780 -1.0219 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4426 0.0005 35 1 0.9744 0.4443 2.7125 36 1 2.0163 -0.9699 4.5331 37 1 4.7120 -3.6141 0.9274 38 1 3.7832 -5.6829 -0.7570 39 1 3.3109 -4.8067 -2.2451 40 1 7.6938 -7.8638 -4.2002 41 1 7.0389 -5.2571 -2.8116 42 1 6.9311 -6.5228 -1.5565 43 1 8.2862 -3.9301 -0.8562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078221121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:55 Heat of formation + Delta-G solvation = -29.068195 kcal Electronic energy + Delta-G solvation = -25435.771619 eV Core-core repulsion = 21801.317743 eV Total energy + Delta-G solvation = -3634.453876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05670 -38.68989 -37.53018 -35.08036 -34.31634 -33.93226 -31.79353 -29.99286 -28.29996 -27.18101 -27.04567 -25.05488 -24.14695 -21.99623 -21.42169 -20.57186 -20.24597 -18.86923 -17.79717 -17.05002 -16.75667 -16.24082 -15.73383 -15.29141 -14.89072 -14.56095 -14.26153 -14.06296 -13.76644 -13.67141 -13.57580 -13.19701 -12.74339 -12.68189 -12.59932 -12.44122 -12.17895 -12.08236 -11.60213 -11.53189 -11.25784 -11.19073 -11.03997 -10.88576 -10.79924 -10.78589 -10.18740 -9.91933 -9.84122 -9.60501 -9.31101 -9.04858 -8.79960 -8.62753 -8.61160 -6.91870 -5.76174 -3.10809 0.40270 1.33402 1.72505 2.26114 3.22621 3.27840 3.40643 3.44532 3.45954 4.43537 4.60689 4.63291 4.77487 4.88674 5.00269 5.17123 5.18174 5.23731 5.43348 5.50308 5.55532 5.56568 5.57159 5.65389 5.75894 5.79742 5.85723 5.97006 6.02768 6.06722 6.11980 6.19871 6.21113 6.42078 6.59520 6.67382 6.86221 7.31746 7.45699 7.60620 7.73069 8.10403 8.16985 8.31950 9.15017 9.75007 10.37951 11.35571 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018698 B = 0.003086 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.108668 B = 9069.972489 C = 9623.337293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.013 4.013 5 C -0.142 4.142 6 C -0.232 4.232 7 S 0.191 5.809 8 C -0.263 4.263 9 C 0.591 3.409 10 O -0.521 6.521 11 N -0.710 5.710 12 C 0.139 3.861 13 H 0.107 0.893 14 C 0.130 3.870 15 N -0.599 5.599 16 C -0.230 4.230 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.924 5.924 20 Si 0.916 3.084 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.154 3.846 25 C 0.068 3.932 26 H 0.057 0.943 27 O -0.563 6.563 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.142 0.858 36 H 0.167 0.833 37 H 0.394 0.606 38 H 0.024 0.976 39 H 0.052 0.948 40 H 0.254 0.746 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 13.935 16.337 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.194 4.194 4 C -0.028 4.028 5 C -0.174 4.174 6 C -0.370 4.370 7 S 0.459 5.541 8 C -0.383 4.383 9 C 0.378 3.622 10 O -0.400 6.400 11 N -0.359 5.359 12 C 0.035 3.965 13 H 0.125 0.875 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.358 4.358 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.029 3.971 25 C 0.008 3.992 26 H 0.075 0.925 27 O -0.367 6.367 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.185 0.815 37 H 0.228 0.772 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.033 13.261 15.928 21.886 hybrid contribution -0.473 -0.076 -0.371 0.606 sum -7.506 13.184 15.556 21.729 Atomic orbital electron populations 1.21779 0.94379 1.01901 1.01474 1.20439 0.95733 0.95990 0.96847 1.21761 1.01240 0.94967 1.01462 1.19483 0.93837 0.93530 0.95928 1.19860 1.03721 1.02734 0.91077 1.25206 1.04876 1.02445 1.04445 1.83020 1.42814 1.31796 0.96425 1.24490 1.10430 1.06353 0.97047 1.16892 0.79108 0.79021 0.87229 1.90710 1.60265 1.61401 1.27609 1.45826 1.41006 1.39262 1.09834 1.22311 0.91568 0.96242 0.86424 0.87519 1.21858 0.93467 0.89429 0.94971 1.44240 1.00483 1.45658 1.42348 1.19048 0.92835 1.13251 1.10617 0.90166 1.24808 0.95298 1.00203 0.99987 1.69906 0.98547 1.44458 1.44267 0.86141 0.76994 0.80835 0.81453 1.21016 1.21558 1.21110 1.21817 0.87929 0.93545 0.93828 1.23459 0.86493 0.90239 0.98998 0.92522 1.86468 1.17912 1.38330 1.94033 0.93072 0.92195 0.92602 0.85838 0.92166 0.93092 0.92685 0.84007 0.81549 0.77226 0.95843 0.92982 0.93593 0.92032 0.93245 0.77631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.99 37.16 0.33 -1.06 16 2 C -0.07 -0.85 3.07 -91.77 -0.28 -1.13 16 3 C -0.14 -1.41 9.09 37.16 0.34 -1.07 16 4 C -0.01 -0.16 4.72 -105.48 -0.50 -0.65 16 5 C -0.14 -1.37 9.18 -41.41 -0.38 -1.75 16 6 C -0.23 -1.99 10.92 29.18 0.32 -1.68 16 7 S 0.19 1.87 22.18 -107.50 -2.38 -0.52 16 8 C -0.26 -3.50 6.45 -36.79 -0.24 -3.73 16 9 C 0.59 9.68 7.77 -12.90 -0.10 9.58 16 10 O -0.52 -10.08 13.69 5.18 0.07 -10.01 16 11 N -0.71 -11.18 5.21 -53.06 -0.28 -11.46 16 12 C 0.14 2.67 3.09 -65.78 -0.20 2.47 16 13 H 0.11 2.32 7.63 -51.93 -0.40 1.92 16 14 C 0.13 2.81 6.93 -2.51 -0.02 2.79 16 15 N -0.60 -15.39 3.40 -170.04 -0.58 -15.97 16 16 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 17 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -26.73 10.31 55.49 0.57 -26.16 16 20 Si 0.92 22.10 29.55 -169.99 -5.02 17.07 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.15 3.66 5.15 -3.06 -0.02 3.64 16 25 C 0.07 1.26 3.96 -24.89 -0.10 1.17 16 26 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 27 O -0.56 -9.74 13.40 -35.23 -0.47 -10.21 16 28 H 0.05 0.43 7.50 -51.93 -0.39 0.04 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.12 1.88 4.95 -51.93 -0.26 1.62 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.44 8.00 -51.93 -0.42 0.02 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.14 1.08 7.67 -52.49 -0.40 0.68 16 36 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.39 5.18 7.67 -40.82 -0.31 4.87 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 42 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 43 H 0.38 4.92 9.12 45.56 0.42 5.33 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -32.56 362.53 -9.17 -41.72 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.45 Total: 8.36 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.09 Total: 1.71 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.28 Total: -53.59 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.40 Total: -20.22 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.38 Total: -0.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.56 -9.17 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078221121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.656 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds