Wall clock time and date at job start Tue Mar 31 2020 14:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46978 * 2 1 4 4 C 1.50696 * 109.47246 * 120.00265 * 2 1 3 5 5 C 1.37477 * 123.35280 * 305.31066 * 4 2 1 6 6 C 1.33811 * 115.10403 * 179.97438 * 5 4 2 7 7 S 1.70623 * 110.95243 * 0.02562 * 6 5 4 8 8 C 1.36644 * 123.35200 * 125.31173 * 4 2 1 9 9 C 1.46586 * 125.45874 * 359.73602 * 8 4 2 10 10 O 1.21705 * 119.99594 * 354.35205 * 9 8 4 11 11 N 1.34771 * 120.00004 * 174.35528 * 9 8 4 12 12 C 1.46508 * 119.99994 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.88481 * 34.29864 * 12 11 9 14 14 C 1.54908 * 111.00286 * 270.41743 * 12 11 9 15 15 N 1.47466 * 104.80847 * 204.95076 * 14 12 11 16 16 C 1.36937 * 125.62783 * 204.14276 * 15 14 12 17 17 H 1.08004 * 119.99976 * 359.93910 * 16 15 14 18 18 C 1.38806 * 120.00470 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00497 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46941 * 60.00583 * 20 18 16 22 22 H 1.48504 * 109.47403 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47424 * 300.00905 * 20 18 16 24 24 C 1.47014 * 108.72853 * 24.06871 * 15 14 12 25 25 C 1.54331 * 107.27032 * 358.97597 * 24 15 14 26 26 H 1.08998 * 110.71976 * 96.16403 * 25 24 15 27 27 O 1.42894 * 110.87673 * 219.37493 * 25 24 15 28 28 H 1.08996 * 109.46845 * 300.00025 * 1 2 3 29 29 H 1.09007 * 109.47200 * 59.99497 * 1 2 3 30 30 H 1.08996 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47125 * 240.00597 * 2 1 3 32 32 H 1.08993 * 109.47489 * 300.00081 * 3 2 1 33 33 H 1.09003 * 109.46705 * 60.00340 * 3 2 1 34 34 H 1.09006 * 109.47031 * 179.97438 * 3 2 1 35 35 H 1.07999 * 122.44452 * 359.97438 * 5 4 2 36 36 H 1.07998 * 124.52355 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00151 * 359.97438 * 11 9 8 38 38 H 1.09005 * 110.36256 * 323.75536 * 14 12 11 39 39 H 1.08999 * 110.36443 * 86.07414 * 14 12 11 40 40 H 0.96995 * 120.00488 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.88763 * 239.56337 * 24 15 14 42 42 H 1.08995 * 109.88526 * 118.38850 * 24 15 14 43 43 H 0.96701 * 113.99902 * 293.60924 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6585 -0.3659 2.5077 6 6 2.2042 -1.1077 3.4785 7 16 3.2364 -2.3004 2.8280 8 6 2.9048 -1.7612 1.1876 9 6 3.4688 -2.3491 -0.0311 10 8 3.0883 -1.9685 -1.1227 11 7 4.4086 -3.3111 0.0573 12 6 4.9726 -3.8982 -1.1607 13 1 5.0425 -3.1544 -1.9543 14 6 4.1455 -5.1247 -1.6203 15 7 5.0898 -5.9447 -2.4018 16 6 4.7478 -6.8480 -3.3724 17 1 3.7086 -7.0073 -3.6199 18 6 5.7365 -7.5595 -4.0379 19 7 7.0029 -7.3664 -3.7355 20 14 5.2700 -8.7923 -5.3615 21 1 4.5352 -8.0969 -6.4487 22 1 6.4999 -9.4147 -5.9140 23 1 4.4038 -9.8456 -4.7738 24 6 6.4588 -5.6307 -1.9677 25 6 6.3559 -4.5421 -0.8786 26 1 6.3781 -4.9880 0.1157 27 8 7.4009 -3.5780 -1.0219 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4426 0.0005 35 1 0.9744 0.4443 2.7125 36 1 2.0163 -0.9699 4.5331 37 1 4.7120 -3.6141 0.9274 38 1 3.7832 -5.6829 -0.7570 39 1 3.3109 -4.8067 -2.2451 40 1 7.6938 -7.8638 -4.2002 41 1 7.0389 -5.2571 -2.8116 42 1 6.9311 -6.5228 -1.5565 43 1 8.2862 -3.9301 -0.8562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078221121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:54 Heat of formation + Delta-G solvation = -52.822601 kcal Electronic energy + Delta-G solvation = -25436.801688 eV Core-core repulsion = 21801.317743 eV Total energy + Delta-G solvation = -3635.483945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28706 -39.94132 -38.85145 -36.71093 -35.68351 -34.94231 -33.69528 -31.15613 -29.96426 -28.72207 -27.98278 -26.58698 -25.47912 -23.03023 -22.53033 -22.24487 -21.85357 -20.03325 -18.98788 -18.78852 -18.13481 -17.36341 -17.14527 -16.61227 -16.19795 -16.15250 -15.76413 -15.24410 -15.11006 -14.64662 -14.54186 -14.48770 -14.38957 -14.20210 -13.81170 -13.47862 -13.42294 -13.17850 -13.16944 -12.93387 -12.79338 -12.70713 -12.36683 -12.14754 -12.04165 -11.99855 -11.89571 -11.62432 -11.56956 -11.04149 -10.78316 -10.65998 -10.32890 -9.75591 -9.36877 -8.99237 -7.89824 -5.27505 -0.46642 0.51980 0.96175 1.41432 1.45425 1.49026 1.55060 1.93582 2.12722 2.47177 3.08388 3.30689 3.49509 3.68586 3.85685 3.89766 4.00233 4.03199 4.14143 4.29111 4.32474 4.39727 4.45645 4.50537 4.70958 4.78191 4.79296 4.81029 4.93072 4.97555 5.05975 5.16718 5.23159 5.33902 5.36613 5.39136 5.40719 5.42369 5.63886 5.70655 6.11536 6.38271 6.84081 7.02941 7.09243 7.67069 8.29699 9.19747 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018698 B = 0.003086 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.108668 B = 9069.972489 C = 9623.337293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C -0.131 4.131 4 C -0.010 4.010 5 C -0.155 4.155 6 C -0.209 4.209 7 S 0.225 5.775 8 C -0.311 4.311 9 C 0.588 3.412 10 O -0.563 6.563 11 N -0.700 5.700 12 C 0.155 3.845 13 H 0.075 0.925 14 C 0.132 3.868 15 N -0.621 5.621 16 C -0.252 4.252 17 H 0.081 0.919 18 C -0.059 4.059 19 N -0.947 5.947 20 Si 0.982 3.018 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.163 3.837 25 C 0.091 3.909 26 H 0.094 0.906 27 O -0.568 6.568 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.168 0.832 36 H 0.204 0.796 37 H 0.409 0.591 38 H 0.041 0.959 39 H 0.034 0.966 40 H 0.250 0.750 41 H 0.022 0.978 42 H 0.029 0.971 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.396 14.805 19.408 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 C -0.189 4.189 4 C -0.026 4.026 5 C -0.186 4.186 6 C -0.347 4.347 7 S 0.494 5.506 8 C -0.430 4.430 9 C 0.376 3.624 10 O -0.444 6.444 11 N -0.351 5.351 12 C 0.048 3.952 13 H 0.093 0.907 14 C 0.005 3.995 15 N -0.349 5.349 16 C -0.380 4.380 17 H 0.099 0.901 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.809 3.191 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.200 1.200 24 C 0.037 3.963 25 C 0.031 3.969 26 H 0.111 0.889 27 O -0.376 6.376 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.185 0.815 36 H 0.221 0.779 37 H 0.246 0.754 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.109 14.138 19.051 25.072 hybrid contribution -0.168 -0.283 -1.261 1.303 sum -8.276 13.856 17.790 24.020 Atomic orbital electron populations 1.21740 0.92837 1.01463 1.02928 1.20398 0.97055 0.96630 0.95667 1.21719 1.00179 0.94081 1.02887 1.19735 0.92981 0.92827 0.97048 1.20010 1.04749 1.03991 0.89819 1.25711 1.02506 1.00437 1.06031 1.82862 1.42602 1.31658 0.93445 1.24271 1.12745 1.08276 0.97750 1.17401 0.78468 0.78456 0.88027 1.90703 1.61489 1.62575 1.29648 1.45583 1.41018 1.39239 1.09251 1.21780 0.91814 0.94417 0.87164 0.90701 1.21915 0.92759 0.90101 0.94686 1.44505 1.02038 1.45823 1.42512 1.19410 0.93131 1.13956 1.11528 0.90141 1.25650 0.95322 1.02118 1.02163 1.70112 0.99232 1.45142 1.45066 0.85115 0.76662 0.78604 0.78704 1.20643 1.21588 1.19989 1.21617 0.86556 0.94198 0.93934 1.23144 0.86477 0.88658 0.98647 0.88884 1.86436 1.19047 1.38000 1.94098 0.90606 0.91732 0.93956 0.89718 0.91665 0.90712 0.94274 0.81509 0.77913 0.75413 0.94139 0.94722 0.94061 0.95934 0.95308 0.75257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.99 71.98 0.65 -1.88 16 2 C -0.08 -1.85 3.07 -11.54 -0.04 -1.89 16 3 C -0.13 -2.58 9.09 71.98 0.65 -1.93 16 4 C -0.01 -0.22 4.72 -20.42 -0.10 -0.32 16 5 C -0.16 -2.44 9.18 21.08 0.19 -2.25 16 6 C -0.21 -2.67 10.92 66.81 0.73 -1.94 16 7 S 0.23 3.76 22.18 -56.49 -1.25 2.51 16 8 C -0.31 -8.02 6.45 24.08 0.16 -7.87 16 9 C 0.59 19.71 7.77 86.42 0.67 20.38 16 10 O -0.56 -23.16 13.69 -4.36 -0.06 -23.22 16 11 N -0.70 -22.00 5.21 -439.98 -2.29 -24.29 16 12 C 0.15 6.05 3.09 46.38 0.14 6.19 16 13 H 0.07 3.44 7.63 -2.39 -0.02 3.42 16 14 C 0.13 5.87 6.93 86.85 0.60 6.47 16 15 N -0.62 -32.93 3.40 -691.89 -2.35 -35.28 16 16 C -0.25 -14.51 10.28 84.03 0.86 -13.64 16 17 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 18 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 19 N -0.95 -56.38 10.31 21.65 0.22 -56.16 16 20 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 C 0.16 7.96 5.15 86.73 0.45 8.40 16 25 C 0.09 3.35 3.96 31.79 0.13 3.47 16 26 H 0.09 2.81 8.00 -2.39 -0.02 2.79 16 27 O -0.57 -19.31 13.40 -148.98 -2.00 -21.30 16 28 H 0.08 1.06 7.50 -2.39 -0.02 1.04 16 29 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.08 2.75 4.95 -2.39 -0.01 2.74 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.10 8.00 -2.39 -0.02 1.08 16 34 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.17 1.76 7.67 -2.91 -0.02 1.74 16 36 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.41 10.16 7.67 -92.71 -0.71 9.45 16 38 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.02 1.26 7.30 -2.38 -0.02 1.24 16 42 H 0.03 1.51 7.50 -2.39 -0.02 1.49 16 43 H 0.40 9.88 9.12 -74.06 -0.68 9.21 16 Total: -1.00 -74.76 362.53 -0.48 -75.24 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -0.34 Total: 24.06 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 5.57 Total: 10.29 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -4.42 Total: -115.73 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -2.06 Total: -44.53 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.25 Total: 2.51 kcal Total: -74.76 -0.48 -75.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078221121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.417 kcal (2) G-P(sol) polarization free energy of solvation -74.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds