Wall clock time and date at job start Tue Mar 31 2020 13:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00286 * 2 1 4 4 H 1.09003 * 110.63640 * 26.86462 * 3 2 1 5 5 C 1.54332 * 111.00436 * 263.78494 * 3 2 1 6 6 N 1.47021 * 107.26555 * 219.59720 * 5 3 2 7 7 C 1.36933 * 125.65083 * 178.84852 * 6 5 3 8 8 H 1.07992 * 120.00550 * 189.39056 * 7 6 5 9 9 C 1.38817 * 119.99719 * 9.38726 * 7 6 5 10 10 N 1.31620 * 120.00119 * 209.16582 * 9 7 6 11 11 Si 1.86802 * 119.99832 * 29.16967 * 9 7 6 12 12 H 1.48503 * 109.46877 * 275.35104 * 11 9 7 13 13 H 1.48501 * 109.47185 * 155.35304 * 11 9 7 14 14 H 1.48496 * 109.47348 * 35.35086 * 11 9 7 15 15 C 1.47429 * 108.70372 * 358.58677 * 6 5 3 16 16 C 1.54911 * 104.83029 * 24.35416 * 15 6 5 17 17 H 1.08995 * 111.00419 * 81.10371 * 16 15 6 18 18 N 1.46502 * 111.00285 * 204.91590 * 16 15 6 19 19 C 1.34774 * 120.00030 * 273.54906 * 18 16 15 20 20 O 1.21638 * 120.00149 * 359.97438 * 19 18 16 21 21 C 1.47188 * 120.00000 * 180.02562 * 19 18 16 22 22 C 1.44428 * 123.45972 * 0.02562 * 21 19 18 23 23 C 1.32777 * 113.08198 * 179.97438 * 22 21 19 24 24 C 1.50694 * 124.70846 * 180.02562 * 23 22 21 25 25 S 1.75500 * 110.57670 * 359.97438 * 23 22 21 26 26 C 1.36008 * 123.46008 * 179.72642 * 21 19 18 27 27 C 1.50698 * 124.59300 * 0.02562 * 26 21 19 28 28 H 1.08995 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46623 * 299.99535 * 1 2 3 30 30 H 1.08995 * 109.47027 * 59.99671 * 1 2 3 31 31 H 1.09004 * 109.98826 * 100.12472 * 5 3 2 32 32 H 1.08999 * 109.77703 * 338.95421 * 5 3 2 33 33 H 0.96999 * 119.99811 * 4.90321 * 10 9 7 34 34 H 1.08996 * 110.36839 * 143.19487 * 15 6 5 35 35 H 1.09000 * 110.36348 * 265.51636 * 15 6 5 36 36 H 0.97004 * 119.99841 * 93.54809 * 18 16 15 37 37 H 1.07999 * 123.45809 * 359.97438 * 22 21 19 38 38 H 1.09004 * 109.47462 * 89.99864 * 24 23 22 39 39 H 1.09004 * 109.47245 * 209.99590 * 24 23 22 40 40 H 1.09004 * 109.47620 * 329.99359 * 24 23 22 41 41 H 1.08999 * 109.47030 * 90.00115 * 27 26 21 42 42 H 1.08999 * 109.47040 * 209.99978 * 27 26 21 43 43 H 1.08996 * 109.46979 * 329.99870 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0265 0.4610 5 6 2.3778 1.7473 -1.4323 6 7 3.6669 2.4500 -1.3549 7 6 4.3516 2.9805 -2.4155 8 1 5.3597 3.3436 -2.2803 9 6 3.7501 3.0514 -3.6645 10 7 4.4868 2.9970 -4.7539 11 14 1.8949 3.2242 -3.7992 12 1 1.2658 1.8812 -3.7218 13 1 1.5497 3.8584 -5.0968 14 1 1.3944 4.0701 -2.6861 15 6 4.0971 2.4946 0.0545 16 6 3.3817 1.2957 0.7256 17 1 3.9176 0.3655 0.5369 18 7 3.2165 1.5208 2.1638 19 6 4.2043 1.1837 3.0164 20 8 5.2328 0.6921 2.5920 21 6 4.0382 1.4094 4.4614 22 6 2.8498 1.9856 5.0459 23 6 2.9202 2.0952 6.3672 24 6 1.8295 2.6592 7.2408 25 16 4.4593 1.4907 6.9552 26 6 4.9856 1.0913 5.3839 27 6 6.3208 0.4719 5.0604 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6127 2.4182 -1.8231 32 1 2.4706 0.8725 -2.0758 33 1 5.4409 2.8361 -4.6865 34 1 5.1787 2.3788 0.1248 35 1 3.7841 3.4306 0.5172 36 1 2.3962 1.9125 2.5023 37 1 1.9920 2.2956 4.4675 38 1 1.1606 1.8564 7.5509 39 1 2.2730 3.1233 8.1218 40 1 1.2658 3.4062 6.6817 41 1 7.0534 1.2595 4.8838 42 1 6.6467 -0.1464 5.8968 43 1 6.2281 -0.1452 4.1668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081908499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:26 Heat of formation + Delta-G solvation = -19.131398 kcal Electronic energy + Delta-G solvation = -25521.464851 eV Core-core repulsion = 21887.441866 eV Total energy + Delta-G solvation = -3634.022984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.12934 -38.70354 -37.20582 -36.17381 -34.31202 -33.16641 -32.08678 -29.81746 -28.96043 -27.90835 -26.33503 -25.60582 -24.23458 -23.15434 -21.05390 -20.97260 -20.24740 -19.29512 -17.61566 -17.41465 -16.78057 -16.62954 -15.90590 -15.16284 -15.03394 -14.83998 -14.32256 -14.28166 -14.11134 -13.88928 -13.53800 -13.45112 -13.37259 -13.19483 -13.10654 -12.58678 -12.24280 -12.14420 -11.92861 -11.77796 -11.76554 -11.71021 -11.25295 -11.16949 -11.11916 -10.59547 -10.35869 -9.89576 -9.69671 -9.39980 -9.19523 -8.94162 -8.84499 -8.59611 -8.41676 -7.11887 -6.37071 -3.18683 0.61156 1.22207 1.65084 1.79133 3.25578 3.38722 3.41317 3.49441 3.67881 3.83802 4.36052 4.61951 4.64811 4.75243 4.84800 4.97227 5.04517 5.10134 5.15615 5.17219 5.29581 5.36193 5.36713 5.43893 5.50064 5.51501 5.52014 5.67567 5.72103 5.78526 5.83884 5.87487 6.09621 6.13090 6.24240 6.42378 6.54151 6.56719 6.75810 7.35837 7.59211 7.66290 8.31642 8.34220 9.01097 9.55745 10.20710 11.12187 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.003256 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.299241 B = 8597.535939 C = 9268.488391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.072 3.928 4 H 0.072 0.928 5 C 0.105 3.895 6 N -0.602 5.602 7 C -0.332 4.332 8 H 0.081 0.919 9 C -0.012 4.012 10 N -0.910 5.910 11 Si 1.050 2.950 12 H -0.292 1.292 13 H -0.297 1.297 14 H -0.294 1.294 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.109 0.891 18 N -0.711 5.711 19 C 0.580 3.420 20 O -0.531 6.531 21 C -0.168 4.168 22 C -0.109 4.109 23 C -0.204 4.204 24 C -0.081 4.081 25 S 0.170 5.830 26 C -0.138 4.138 27 C -0.096 4.096 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.057 0.943 33 H 0.266 0.734 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.396 0.604 37 H 0.146 0.854 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -3.310 26.082 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.013 3.987 4 H 0.090 0.910 5 C -0.021 4.021 6 N -0.331 5.331 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.213 4.213 10 N -0.549 5.549 11 Si 0.883 3.117 12 H -0.220 1.220 13 H -0.224 1.224 14 H -0.222 1.222 15 C 0.002 3.998 16 C 0.032 3.968 17 H 0.127 0.873 18 N -0.361 5.361 19 C 0.366 3.634 20 O -0.409 6.409 21 C -0.184 4.184 22 C -0.138 4.138 23 C -0.320 4.320 24 C -0.140 4.140 25 S 0.436 5.564 26 C -0.259 4.259 27 C -0.154 4.154 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.230 0.770 37 H 0.163 0.837 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.114 -3.718 26.026 27.236 hybrid contribution -0.215 0.496 -0.210 0.580 sum -7.329 -3.221 25.816 27.029 Atomic orbital electron populations 1.22797 0.81390 1.02601 0.99914 1.87953 1.19386 1.26983 1.94902 1.23401 0.93829 0.84583 0.96923 0.91021 1.22016 0.89454 0.96551 0.94067 1.44617 1.20955 1.65368 1.02130 1.20044 0.97678 1.41100 0.87047 0.90107 1.25729 1.06122 0.98946 0.90513 1.70877 1.08040 1.47730 1.28277 0.84033 0.77222 0.76347 0.74138 1.22013 1.22436 1.22215 1.21867 0.98526 0.93769 0.85606 1.22330 0.95483 1.01267 0.77719 0.87304 1.45730 1.19162 1.64279 1.06955 1.17506 0.83325 0.77825 0.84705 1.90755 1.27750 1.44031 1.78370 1.20111 0.95425 1.08724 0.94176 1.21100 0.97977 1.01114 0.93617 1.24234 1.00468 1.09527 0.97782 1.20334 0.94851 1.00714 0.98062 1.82974 1.09116 1.58455 1.05813 1.24484 1.01257 1.02802 0.97317 1.20659 0.90031 1.01047 1.03700 0.89692 0.94329 0.93783 0.95176 0.92557 0.92430 0.92379 0.95628 0.77008 0.83682 0.90714 0.91278 0.90414 0.90124 0.91690 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.46 16 2 O -0.37 -6.24 10.45 -35.23 -0.37 -6.61 16 3 C 0.07 1.25 3.05 -24.89 -0.08 1.18 16 4 H 0.07 1.06 7.68 -51.93 -0.40 0.66 16 5 C 0.10 2.35 4.73 -3.06 -0.01 2.34 16 6 N -0.60 -15.20 3.29 -170.07 -0.56 -15.76 16 7 C -0.33 -9.70 10.41 -15.06 -0.16 -9.86 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C -0.01 -0.35 5.41 -17.43 -0.09 -0.44 16 10 N -0.91 -28.69 13.70 55.49 0.76 -27.93 16 11 Si 1.05 26.63 24.71 -169.99 -4.20 22.43 16 12 H -0.29 -6.99 6.70 56.52 0.38 -6.62 16 13 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 14 H -0.29 -7.08 6.84 56.52 0.39 -6.69 16 15 C 0.13 2.76 6.93 -2.53 -0.02 2.74 16 16 C 0.14 2.49 3.04 -65.78 -0.20 2.29 16 17 H 0.11 2.22 7.73 -51.93 -0.40 1.82 16 18 N -0.71 -10.37 5.21 -52.87 -0.28 -10.64 16 19 C 0.58 9.06 7.79 -12.63 -0.10 8.96 16 20 O -0.53 -9.98 13.81 5.24 0.07 -9.91 16 21 C -0.17 -2.14 5.98 -104.63 -0.63 -2.77 16 22 C -0.11 -1.09 9.75 -39.02 -0.38 -1.47 16 23 C -0.20 -1.77 6.44 -36.18 -0.23 -2.00 16 24 C -0.08 -0.46 10.34 36.00 0.37 -0.09 16 25 S 0.17 1.50 22.94 -107.50 -2.47 -0.96 16 26 C -0.14 -1.62 6.34 -35.11 -0.22 -1.84 16 27 C -0.10 -1.08 9.60 36.00 0.35 -0.73 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.39 8.11 -51.93 -0.42 -0.04 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.70 3.91 -51.93 -0.20 0.50 16 32 H 0.06 1.37 7.78 -51.93 -0.40 0.96 16 33 H 0.27 8.30 8.73 -40.82 -0.36 7.94 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.40 4.53 7.06 -40.82 -0.29 4.24 16 37 H 0.15 1.14 7.10 -52.49 -0.37 0.77 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 1.45 5.94 -51.93 -0.31 1.14 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -34.51 360.79 -8.12 -42.63 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.22 Total: 1.56 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.31 Total: -0.25 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.07 Total: -54.33 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.30 Total: -16.52 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -4.20 Total: 22.43 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.47 Total: -0.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.51 -8.12 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081908499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.497 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds