Wall clock time and date at job start Tue Mar 31 2020 13:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00286 * 2 1 4 4 H 1.09003 * 110.63640 * 26.86462 * 3 2 1 5 5 C 1.54332 * 111.00436 * 263.78494 * 3 2 1 6 6 N 1.47021 * 107.26555 * 219.59720 * 5 3 2 7 7 C 1.36933 * 125.65083 * 178.84852 * 6 5 3 8 8 H 1.07992 * 120.00550 * 189.39056 * 7 6 5 9 9 C 1.38817 * 119.99719 * 9.38726 * 7 6 5 10 10 N 1.31620 * 120.00119 * 209.16582 * 9 7 6 11 11 Si 1.86802 * 119.99832 * 29.16967 * 9 7 6 12 12 H 1.48503 * 109.46877 * 275.35104 * 11 9 7 13 13 H 1.48501 * 109.47185 * 155.35304 * 11 9 7 14 14 H 1.48496 * 109.47348 * 35.35086 * 11 9 7 15 15 C 1.47429 * 108.70372 * 358.58677 * 6 5 3 16 16 C 1.54911 * 104.83029 * 24.35416 * 15 6 5 17 17 H 1.08995 * 111.00419 * 81.10371 * 16 15 6 18 18 N 1.46502 * 111.00285 * 204.91590 * 16 15 6 19 19 C 1.34774 * 120.00030 * 273.54906 * 18 16 15 20 20 O 1.21638 * 120.00149 * 359.97438 * 19 18 16 21 21 C 1.47188 * 120.00000 * 180.02562 * 19 18 16 22 22 C 1.44428 * 123.45972 * 0.02562 * 21 19 18 23 23 C 1.32777 * 113.08198 * 179.97438 * 22 21 19 24 24 C 1.50694 * 124.70846 * 180.02562 * 23 22 21 25 25 S 1.75500 * 110.57670 * 359.97438 * 23 22 21 26 26 C 1.36008 * 123.46008 * 179.72642 * 21 19 18 27 27 C 1.50698 * 124.59300 * 0.02562 * 26 21 19 28 28 H 1.08995 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46623 * 299.99535 * 1 2 3 30 30 H 1.08995 * 109.47027 * 59.99671 * 1 2 3 31 31 H 1.09004 * 109.98826 * 100.12472 * 5 3 2 32 32 H 1.08999 * 109.77703 * 338.95421 * 5 3 2 33 33 H 0.96999 * 119.99811 * 4.90321 * 10 9 7 34 34 H 1.08996 * 110.36839 * 143.19487 * 15 6 5 35 35 H 1.09000 * 110.36348 * 265.51636 * 15 6 5 36 36 H 0.97004 * 119.99841 * 93.54809 * 18 16 15 37 37 H 1.07999 * 123.45809 * 359.97438 * 22 21 19 38 38 H 1.09004 * 109.47462 * 89.99864 * 24 23 22 39 39 H 1.09004 * 109.47245 * 209.99590 * 24 23 22 40 40 H 1.09004 * 109.47620 * 329.99359 * 24 23 22 41 41 H 1.08999 * 109.47030 * 90.00115 * 27 26 21 42 42 H 1.08999 * 109.47040 * 209.99978 * 27 26 21 43 43 H 1.08996 * 109.46979 * 329.99870 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0265 0.4610 5 6 2.3778 1.7473 -1.4323 6 7 3.6669 2.4500 -1.3549 7 6 4.3516 2.9805 -2.4155 8 1 5.3597 3.3436 -2.2803 9 6 3.7501 3.0514 -3.6645 10 7 4.4868 2.9970 -4.7539 11 14 1.8949 3.2242 -3.7992 12 1 1.2658 1.8812 -3.7218 13 1 1.5497 3.8584 -5.0968 14 1 1.3944 4.0701 -2.6861 15 6 4.0971 2.4946 0.0545 16 6 3.3817 1.2957 0.7256 17 1 3.9176 0.3655 0.5369 18 7 3.2165 1.5208 2.1638 19 6 4.2043 1.1837 3.0164 20 8 5.2328 0.6921 2.5920 21 6 4.0382 1.4094 4.4614 22 6 2.8498 1.9856 5.0459 23 6 2.9202 2.0952 6.3672 24 6 1.8295 2.6592 7.2408 25 16 4.4593 1.4907 6.9552 26 6 4.9856 1.0913 5.3839 27 6 6.3208 0.4719 5.0604 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6127 2.4182 -1.8231 32 1 2.4706 0.8725 -2.0758 33 1 5.4409 2.8361 -4.6865 34 1 5.1787 2.3788 0.1248 35 1 3.7841 3.4306 0.5172 36 1 2.3962 1.9125 2.5023 37 1 1.9920 2.2956 4.4675 38 1 1.1606 1.8564 7.5509 39 1 2.2730 3.1233 8.1218 40 1 1.2658 3.4062 6.6817 41 1 7.0534 1.2595 4.8838 42 1 6.6467 -0.1464 5.8968 43 1 6.2281 -0.1452 4.1668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081908499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:24 Heat of formation + Delta-G solvation = -44.525997 kcal Electronic energy + Delta-G solvation = -25522.566043 eV Core-core repulsion = 21887.441866 eV Total energy + Delta-G solvation = -3635.124177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.38012 -40.04694 -38.14163 -37.66444 -35.82391 -34.15941 -33.90392 -31.10889 -30.19220 -29.42818 -27.49626 -26.63897 -25.57267 -24.43238 -22.71973 -22.12177 -21.78045 -20.31323 -19.64186 -18.40336 -18.06840 -17.84241 -17.21362 -16.40973 -16.28659 -16.10686 -15.87751 -15.55571 -15.22948 -15.09041 -14.85930 -14.70608 -14.34740 -14.21216 -14.11933 -13.84486 -13.74457 -13.54894 -13.24742 -13.06493 -12.89028 -12.59294 -12.47879 -12.44499 -12.38922 -11.97735 -11.85230 -11.70828 -11.33371 -10.95725 -10.74915 -10.64889 -10.21588 -9.56132 -9.38441 -9.23079 -8.74989 -5.48746 -0.23707 0.48795 0.90389 0.95078 1.36790 1.48592 1.68136 2.03113 2.28144 2.51941 2.55128 2.95719 3.29283 3.47632 3.64908 3.67544 3.78396 3.85833 4.10241 4.19258 4.24578 4.27252 4.46396 4.54664 4.56359 4.60813 4.63390 4.63455 4.74053 4.77413 4.82088 4.86099 4.87612 4.91108 5.07702 5.18328 5.21362 5.34978 5.42115 5.51334 6.02118 6.15086 6.46664 6.73092 7.16346 7.36927 8.01120 8.75498 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.003256 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.299241 B = 8597.535939 C = 9268.488391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.393 6.393 3 C 0.092 3.908 4 H 0.114 0.886 5 C 0.097 3.903 6 N -0.622 5.622 7 C -0.332 4.332 8 H 0.044 0.956 9 C -0.067 4.067 10 N -0.943 5.943 11 Si 1.097 2.903 12 H -0.270 1.270 13 H -0.300 1.300 14 H -0.266 1.266 15 C 0.130 3.870 16 C 0.154 3.846 17 H 0.078 0.922 18 N -0.695 5.695 19 C 0.575 3.425 20 O -0.574 6.574 21 C -0.188 4.188 22 C -0.120 4.120 23 C -0.199 4.199 24 C -0.082 4.082 25 S 0.220 5.780 26 C -0.163 4.163 27 C -0.095 4.095 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.251 0.749 34 H 0.028 0.972 35 H 0.045 0.955 36 H 0.415 0.585 37 H 0.168 0.832 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.357 -2.891 29.676 31.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.311 6.311 3 C 0.033 3.967 4 H 0.132 0.868 5 C -0.029 4.029 6 N -0.350 5.350 7 C -0.460 4.460 8 H 0.062 0.938 9 C -0.262 4.262 10 N -0.585 5.585 11 Si 0.922 3.078 12 H -0.196 1.196 13 H -0.228 1.228 14 H -0.192 1.192 15 C 0.004 3.996 16 C 0.047 3.953 17 H 0.096 0.904 18 N -0.347 5.347 19 C 0.363 3.637 20 O -0.455 6.455 21 C -0.205 4.205 22 C -0.148 4.148 23 C -0.316 4.316 24 C -0.141 4.141 25 S 0.487 5.513 26 C -0.283 4.283 27 C -0.153 4.153 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.253 0.747 37 H 0.185 0.815 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.077 -3.302 29.695 31.865 hybrid contribution 1.128 0.321 -1.198 1.676 sum -9.949 -2.981 28.497 30.331 Atomic orbital electron populations 1.23143 0.78749 1.04459 1.01444 1.87948 1.22262 1.26163 1.94772 1.23153 0.93973 0.86160 0.93451 0.86834 1.22186 0.88013 0.95333 0.97329 1.44593 1.22288 1.65438 1.02729 1.19905 0.96710 1.40553 0.88821 0.93778 1.27111 1.10317 0.98632 0.90137 1.70995 1.07379 1.50694 1.29398 0.83454 0.71735 0.77794 0.74792 1.19577 1.22846 1.19239 1.21926 0.97321 0.96123 0.84262 1.21781 0.95647 0.98147 0.79745 0.90358 1.45465 1.19956 1.64198 1.05096 1.18068 0.82628 0.76831 0.86138 1.90745 1.29498 1.45920 1.79370 1.20058 0.97427 1.10775 0.92285 1.21225 0.97654 1.01630 0.94307 1.24705 1.00885 1.08134 0.97845 1.20480 0.94149 1.01424 0.98022 1.82796 1.08738 1.56886 1.02889 1.24731 1.01230 1.03021 0.99359 1.20584 0.90450 1.00898 1.03395 0.87886 0.91201 0.93744 0.94319 0.95089 0.94066 0.95339 0.93747 0.74659 0.81487 0.89372 0.90180 0.89158 0.90466 0.89300 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.85 113.37 1.23 1.59 16 2 O -0.39 -12.06 10.45 -148.98 -1.56 -13.62 16 3 C 0.09 2.98 3.05 31.79 0.10 3.08 16 4 H 0.11 2.78 7.68 -2.39 -0.02 2.76 16 5 C 0.10 4.22 4.73 86.73 0.41 4.63 16 6 N -0.62 -31.89 3.29 -691.97 -2.28 -34.16 16 7 C -0.33 -20.20 10.41 84.04 0.87 -19.33 16 8 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 9 C -0.07 -4.08 5.41 84.86 0.46 -3.62 16 10 N -0.94 -61.83 13.70 21.65 0.30 -61.54 16 11 Si 1.10 53.39 24.71 68.60 1.70 55.09 16 12 H -0.27 -12.06 6.70 99.48 0.67 -11.39 16 13 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 14 H -0.27 -11.69 6.84 99.48 0.68 -11.01 16 15 C 0.13 5.65 6.93 86.85 0.60 6.25 16 16 C 0.15 5.51 3.04 46.38 0.14 5.65 16 17 H 0.08 3.32 7.73 -2.39 -0.02 3.30 16 18 N -0.70 -19.30 5.21 -439.44 -2.29 -21.59 16 19 C 0.58 17.99 7.79 86.59 0.67 18.66 16 20 O -0.57 -22.74 13.81 -4.15 -0.06 -22.80 16 21 C -0.19 -4.59 5.98 -19.87 -0.12 -4.70 16 22 C -0.12 -2.03 9.75 22.67 0.22 -1.81 16 23 C -0.20 -2.73 6.44 24.51 0.16 -2.57 16 24 C -0.08 -0.57 10.34 71.23 0.74 0.17 16 25 S 0.22 3.27 22.94 -56.49 -1.30 1.98 16 26 C -0.16 -3.66 6.34 25.17 0.16 -3.50 16 27 C -0.10 -2.18 9.60 71.24 0.68 -1.49 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.01 8.11 -2.39 -0.02 0.99 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 1.66 3.91 -2.39 -0.01 1.65 16 32 H 0.03 1.50 7.78 -2.39 -0.02 1.48 16 33 H 0.25 16.60 8.73 -92.71 -0.81 15.79 16 34 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.42 8.11 7.06 -92.71 -0.65 7.46 16 37 H 0.17 1.92 7.10 -2.91 -0.02 1.90 16 38 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 2.24 5.94 -2.39 -0.01 2.23 16 Total: -1.00 -80.56 360.79 1.12 -79.44 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.27 Total: 14.20 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.33 Total: 3.00 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -4.27 Total: -117.29 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.61 Total: -36.42 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 1.70 Total: 55.09 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.30 Total: 1.98 kcal Total: -80.56 1.12 -79.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081908499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.918 kcal (2) G-P(sol) polarization free energy of solvation -80.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds