Wall clock time and date at job start Tue Mar 31 2020 14:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33819 * 124.51655 * 2 1 4 4 C 1.37478 * 115.09719 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.34725 * 180.02562 * 4 3 2 6 6 C 1.36649 * 113.29725 * 359.97438 * 4 3 2 7 7 C 1.46579 * 125.45824 * 180.02562 * 6 4 3 8 8 O 1.21702 * 119.99652 * 0.02562 * 7 6 4 9 9 N 1.34767 * 120.00049 * 180.02562 * 7 6 4 10 10 C 1.46508 * 120.00260 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.45679 * 35.02690 * 10 9 7 12 12 C 1.53042 * 109.45953 * 275.06758 * 10 9 7 13 13 C 1.53184 * 109.30947 * 178.60893 * 12 10 9 14 14 N 1.46930 * 108.77782 * 54.63687 * 13 12 10 15 15 C 1.36934 * 120.62999 * 126.40597 * 14 13 12 16 16 H 1.07997 * 120.00107 * 207.66611 * 15 14 13 17 17 C 1.38815 * 120.00059 * 27.67029 * 15 14 13 18 18 N 1.31612 * 120.00114 * 17.36359 * 17 15 14 19 19 Si 1.86802 * 119.99751 * 197.36487 * 17 15 14 20 20 H 1.48502 * 109.47492 * 59.99989 * 19 17 15 21 21 H 1.48503 * 109.47028 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47116 * 299.99589 * 19 17 15 23 23 C 1.46926 * 118.73777 * 306.39199 * 14 13 12 24 24 C 1.53037 * 109.46071 * 154.99408 * 10 9 7 25 25 H 1.09010 * 109.49495 * 61.40873 * 24 10 9 26 26 O 1.42896 * 109.50371 * 301.34013 * 24 10 9 27 27 S 1.70610 * 124.52684 * 179.70298 * 2 1 3 28 28 H 1.09004 * 109.47134 * 90.00140 * 1 2 3 29 29 H 1.08996 * 109.46494 * 209.99771 * 1 2 3 30 30 H 1.08997 * 109.47322 * 330.00085 * 1 2 3 31 31 H 1.07997 * 122.45144 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.46795 * 89.97721 * 5 4 3 33 33 H 1.09002 * 109.46505 * 209.97124 * 5 4 3 34 34 H 1.08993 * 109.47461 * 329.97496 * 5 4 3 35 35 H 0.97002 * 120.00748 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.49364 * 298.56662 * 12 10 9 37 37 H 1.09003 * 109.49540 * 58.65788 * 12 10 9 38 38 H 1.08995 * 109.59155 * 294.84916 * 13 12 10 39 39 H 1.09003 * 109.58444 * 174.42249 * 13 12 10 40 40 H 0.97005 * 120.00169 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.58152 * 293.81715 * 23 14 13 42 42 H 1.08999 * 109.70406 * 173.46220 * 23 14 13 43 43 H 0.96693 * 114.00164 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6216 0.8776 -0.0006 5 6 4.6449 1.9840 -0.0001 6 6 3.9493 -0.4490 -0.0005 7 6 5.3124 -0.9881 -0.0004 8 8 6.2659 -0.2318 0.0000 9 7 5.5097 -2.3212 -0.0008 10 6 6.8721 -2.8602 -0.0002 11 1 7.5190 -2.2113 0.5903 12 6 7.3939 -2.9286 -1.4373 13 6 8.8307 -3.4597 -1.4297 14 7 8.8564 -4.7441 -0.7166 15 6 9.3930 -5.8581 -1.3049 16 1 9.0405 -6.8397 -1.0247 17 6 10.3903 -5.7258 -2.2614 18 7 11.0583 -4.5964 -2.3638 19 14 10.7841 -7.1507 -3.4034 20 1 9.5755 -7.5022 -4.1914 21 1 11.8791 -6.7574 -4.3262 22 1 11.2105 -8.3250 -2.6007 23 6 8.2956 -4.8104 0.6398 24 6 6.8648 -4.2639 0.6091 25 1 6.2375 -4.9195 0.0050 26 8 6.3487 -4.2035 1.9403 27 16 2.4741 -1.4056 0.0073 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.8428 2.0965 -0.0004 32 1 4.8915 2.2502 1.0277 33 1 5.5449 1.6464 -0.5140 34 1 4.2383 2.8552 -0.5135 35 1 4.7498 -2.9241 -0.0008 36 1 6.7620 -3.5968 -2.0223 37 1 7.3768 -1.9320 -1.8784 38 1 9.4811 -2.7472 -0.9225 39 1 9.1724 -3.6040 -2.4547 40 1 11.7549 -4.5038 -3.0324 41 1 8.9024 -4.2079 1.3158 42 1 8.2845 -5.8449 0.9828 43 1 6.3148 -5.0598 2.3882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090297461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:48 Heat of formation + Delta-G solvation = -40.162782 kcal Electronic energy + Delta-G solvation = -25436.408079 eV Core-core repulsion = 21801.473105 eV Total energy + Delta-G solvation = -3634.934974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.92333 -38.57405 -37.54972 -35.41012 -34.32283 -32.86514 -31.97317 -30.17782 -28.81318 -28.33962 -27.35604 -25.01674 -22.59768 -22.22708 -22.06643 -20.86979 -19.79728 -18.76760 -17.72740 -17.10009 -16.57438 -16.10490 -15.66207 -15.05941 -14.88930 -14.66938 -14.14068 -13.98839 -13.88887 -13.59896 -13.29764 -13.24265 -13.15643 -13.02770 -12.67433 -12.28184 -12.09906 -12.00464 -11.81320 -11.73100 -11.57276 -11.11638 -10.98251 -10.86383 -10.66626 -10.34792 -10.28014 -9.94993 -9.80296 -9.71921 -9.43366 -8.89581 -8.67140 -8.53350 -8.43207 -6.78137 -5.85210 -3.29297 0.41580 1.33109 1.74365 2.26418 3.32795 3.34845 3.36768 3.41400 3.41998 4.36549 4.46637 4.51370 4.84809 4.95283 5.07888 5.14357 5.23209 5.28863 5.32138 5.46559 5.49490 5.53989 5.54909 5.71130 5.76320 5.83904 5.94078 5.97009 6.10369 6.25149 6.28354 6.44576 6.47968 6.55344 6.66810 6.76829 6.85553 7.28768 7.59979 7.70022 7.72286 7.91803 8.37081 8.39437 9.12651 9.75114 10.31002 11.23371 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021699 B = 0.002933 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.049335 B = 9542.748944 C = 9791.818653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.198 4.198 3 C -0.153 4.153 4 C -0.022 4.022 5 C -0.105 4.105 6 C -0.267 4.267 7 C 0.589 3.411 8 O -0.527 6.527 9 N -0.712 5.712 10 C 0.164 3.836 11 H 0.090 0.910 12 C -0.147 4.147 13 C 0.172 3.828 14 N -0.588 5.588 15 C -0.261 4.261 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.899 5.899 19 Si 0.905 3.095 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.122 3.878 24 C 0.079 3.921 25 H 0.056 0.944 26 O -0.571 6.571 27 S 0.192 5.808 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.392 0.608 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.094 0.906 40 H 0.256 0.744 41 H 0.029 0.971 42 H 0.060 0.940 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.696 7.922 5.184 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.318 4.318 3 C -0.184 4.184 4 C -0.036 4.036 5 C -0.164 4.164 6 C -0.387 4.387 7 C 0.375 3.625 8 O -0.406 6.406 9 N -0.361 5.361 10 C 0.061 3.939 11 H 0.108 0.892 12 C -0.187 4.187 13 C 0.046 3.954 14 N -0.312 5.312 15 C -0.390 4.390 16 H 0.084 0.916 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.208 1.208 23 C -0.006 4.006 24 C 0.018 3.982 25 H 0.074 0.926 26 O -0.375 6.375 27 S 0.460 5.540 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -20.209 7.533 4.938 22.125 hybrid contribution 0.080 -0.062 -0.477 0.487 sum -20.128 7.472 4.461 21.929 Atomic orbital electron populations 1.20379 0.87491 1.03372 1.03006 1.24147 1.01381 0.97952 1.08320 1.19831 0.92186 0.99503 1.06911 1.19482 0.94678 0.93506 0.95967 1.20734 0.98116 0.94483 1.03020 1.24473 0.97022 0.97381 1.19826 1.16878 0.86508 0.82514 0.76634 1.90778 1.41722 1.57632 1.50499 1.45983 1.09661 1.05846 1.74585 1.21047 0.81858 0.93309 0.97706 0.89181 1.22620 1.01233 1.00988 0.93902 1.20834 0.89220 0.85680 0.99715 1.44040 1.69025 1.07806 1.10321 1.19116 1.14365 0.86212 1.19320 0.91570 1.25067 0.95656 0.97194 1.01451 1.70024 1.23047 1.25700 1.35457 0.86344 0.77592 0.81844 0.80804 1.20949 1.21548 1.20827 1.21514 0.90936 0.98919 0.89237 1.22789 0.97225 0.95790 0.82372 0.92600 1.86487 1.86828 1.35617 1.28569 1.82957 0.94451 1.07596 1.68984 0.90456 0.91124 0.90395 0.84041 0.90760 0.88638 0.91878 0.77424 0.92327 0.91814 0.95745 0.88810 0.93357 0.95273 0.92127 0.77981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.31 36.01 0.37 -0.15 16 2 C -0.20 -1.89 6.28 -35.86 -0.23 -2.12 16 3 C -0.15 -1.58 9.82 -41.41 -0.41 -1.99 16 4 C -0.02 -0.28 5.90 -105.47 -0.62 -0.90 16 5 C -0.11 -1.27 9.55 36.01 0.34 -0.93 16 6 C -0.27 -3.75 6.45 -36.79 -0.24 -3.98 16 7 C 0.59 9.98 7.74 -12.90 -0.10 9.88 16 8 O -0.53 -10.45 13.91 5.19 0.07 -10.37 16 9 N -0.71 -11.49 4.91 -55.10 -0.27 -11.76 16 10 C 0.16 3.04 2.12 -67.89 -0.14 2.90 16 11 H 0.09 1.90 7.58 -51.93 -0.39 1.50 16 12 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 13 C 0.17 4.12 5.31 -3.71 -0.02 4.10 16 14 N -0.59 -14.41 3.00 -172.32 -0.52 -14.93 16 15 C -0.26 -6.96 9.59 -15.06 -0.14 -7.11 16 16 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 17 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 18 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 19 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.12 2.48 6.14 -3.71 -0.02 2.46 16 24 C 0.08 1.37 3.14 -26.61 -0.08 1.28 16 25 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 26 O -0.57 -8.69 13.16 -35.23 -0.46 -9.15 16 27 S 0.19 2.04 22.10 -107.50 -2.38 -0.33 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.40 6.01 -51.93 -0.31 1.08 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.39 5.48 7.72 -40.82 -0.31 5.17 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.49 6.04 -51.93 -0.31 2.18 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 43 H 0.37 4.05 9.08 45.56 0.41 4.46 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -31.87 362.12 -9.56 -41.43 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.53 Total: 8.22 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.53 Total: 0.41 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.17 Total: -51.89 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.39 Total: -19.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.38 Total: -0.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.87 -9.56 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090297461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.267 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds