Wall clock time and date at job start Tue Mar 31 2020 14:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33819 * 124.51655 * 2 1 4 4 C 1.37478 * 115.09719 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.34725 * 180.02562 * 4 3 2 6 6 C 1.36649 * 113.29725 * 359.97438 * 4 3 2 7 7 C 1.46579 * 125.45824 * 180.02562 * 6 4 3 8 8 O 1.21702 * 119.99652 * 0.02562 * 7 6 4 9 9 N 1.34767 * 120.00049 * 180.02562 * 7 6 4 10 10 C 1.46508 * 120.00260 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.45679 * 35.02690 * 10 9 7 12 12 C 1.53042 * 109.45953 * 275.06758 * 10 9 7 13 13 C 1.53184 * 109.30947 * 178.60893 * 12 10 9 14 14 N 1.46930 * 108.77782 * 54.63687 * 13 12 10 15 15 C 1.36934 * 120.62999 * 126.40597 * 14 13 12 16 16 H 1.07997 * 120.00107 * 207.66611 * 15 14 13 17 17 C 1.38815 * 120.00059 * 27.67029 * 15 14 13 18 18 N 1.31612 * 120.00114 * 17.36359 * 17 15 14 19 19 Si 1.86802 * 119.99751 * 197.36487 * 17 15 14 20 20 H 1.48502 * 109.47492 * 59.99989 * 19 17 15 21 21 H 1.48503 * 109.47028 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47116 * 299.99589 * 19 17 15 23 23 C 1.46926 * 118.73777 * 306.39199 * 14 13 12 24 24 C 1.53037 * 109.46071 * 154.99408 * 10 9 7 25 25 H 1.09010 * 109.49495 * 61.40873 * 24 10 9 26 26 O 1.42896 * 109.50371 * 301.34013 * 24 10 9 27 27 S 1.70610 * 124.52684 * 179.70298 * 2 1 3 28 28 H 1.09004 * 109.47134 * 90.00140 * 1 2 3 29 29 H 1.08996 * 109.46494 * 209.99771 * 1 2 3 30 30 H 1.08997 * 109.47322 * 330.00085 * 1 2 3 31 31 H 1.07997 * 122.45144 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.46795 * 89.97721 * 5 4 3 33 33 H 1.09002 * 109.46505 * 209.97124 * 5 4 3 34 34 H 1.08993 * 109.47461 * 329.97496 * 5 4 3 35 35 H 0.97002 * 120.00748 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.49364 * 298.56662 * 12 10 9 37 37 H 1.09003 * 109.49540 * 58.65788 * 12 10 9 38 38 H 1.08995 * 109.59155 * 294.84916 * 13 12 10 39 39 H 1.09003 * 109.58444 * 174.42249 * 13 12 10 40 40 H 0.97005 * 120.00169 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.58152 * 293.81715 * 23 14 13 42 42 H 1.08999 * 109.70406 * 173.46220 * 23 14 13 43 43 H 0.96693 * 114.00164 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6216 0.8776 -0.0006 5 6 4.6449 1.9840 -0.0001 6 6 3.9493 -0.4490 -0.0005 7 6 5.3124 -0.9881 -0.0004 8 8 6.2659 -0.2318 0.0000 9 7 5.5097 -2.3212 -0.0008 10 6 6.8721 -2.8602 -0.0002 11 1 7.5190 -2.2113 0.5903 12 6 7.3939 -2.9286 -1.4373 13 6 8.8307 -3.4597 -1.4297 14 7 8.8564 -4.7441 -0.7166 15 6 9.3930 -5.8581 -1.3049 16 1 9.0405 -6.8397 -1.0247 17 6 10.3903 -5.7258 -2.2614 18 7 11.0583 -4.5964 -2.3638 19 14 10.7841 -7.1507 -3.4034 20 1 9.5755 -7.5022 -4.1914 21 1 11.8791 -6.7574 -4.3262 22 1 11.2105 -8.3250 -2.6007 23 6 8.2956 -4.8104 0.6398 24 6 6.8648 -4.2639 0.6091 25 1 6.2375 -4.9195 0.0050 26 8 6.3487 -4.2035 1.9403 27 16 2.4741 -1.4056 0.0073 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.8428 2.0965 -0.0004 32 1 4.8915 2.2502 1.0277 33 1 5.5449 1.6464 -0.5140 34 1 4.2383 2.8552 -0.5135 35 1 4.7498 -2.9241 -0.0008 36 1 6.7620 -3.5968 -2.0223 37 1 7.3768 -1.9320 -1.8784 38 1 9.4811 -2.7472 -0.9225 39 1 9.1724 -3.6040 -2.4547 40 1 11.7549 -4.5038 -3.0324 41 1 8.9024 -4.2079 1.3158 42 1 8.2845 -5.8449 0.9828 43 1 6.3148 -5.0598 2.3882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090297461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:47 Heat of formation + Delta-G solvation = -62.750656 kcal Electronic energy + Delta-G solvation = -25437.387563 eV Core-core repulsion = 21801.473105 eV Total energy + Delta-G solvation = -3635.914457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24225 -39.80782 -38.75875 -37.00520 -35.81452 -33.89538 -33.56610 -31.89345 -30.37130 -29.33452 -28.38649 -26.78249 -24.22178 -23.73329 -22.96842 -22.21729 -21.39279 -20.01600 -18.88170 -18.67684 -18.03216 -17.36796 -16.94392 -16.71236 -16.21421 -15.87439 -15.69913 -15.28683 -15.12773 -14.89671 -14.73923 -14.51496 -14.04424 -13.97249 -13.89958 -13.74443 -13.61351 -13.29699 -12.99686 -12.80787 -12.68895 -12.62214 -12.53175 -12.40005 -12.15998 -12.08653 -11.90003 -11.80247 -11.40698 -11.13466 -10.90294 -10.57599 -10.17717 -9.57707 -9.38091 -8.78541 -7.90952 -5.38507 -0.50810 0.47420 0.89590 1.36479 1.48392 1.51195 1.57938 2.04912 2.14020 2.48964 3.08936 3.26209 3.60244 3.74928 3.78775 3.88012 4.01690 4.18514 4.20414 4.26571 4.35577 4.49971 4.55439 4.63181 4.64448 4.74286 4.76975 4.81457 4.89514 4.98398 5.00404 5.08434 5.09545 5.18038 5.33809 5.38572 5.40817 5.54314 5.58522 5.64228 6.32643 6.43657 6.86474 7.08303 7.12627 7.76633 8.29660 9.16451 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021699 B = 0.002933 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.049335 B = 9542.748944 C = 9791.818653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.181 4.181 3 C -0.167 4.167 4 C -0.022 4.022 5 C -0.105 4.105 6 C -0.314 4.314 7 C 0.584 3.416 8 O -0.569 6.569 9 N -0.703 5.703 10 C 0.172 3.828 11 H 0.058 0.942 12 C -0.129 4.129 13 C 0.182 3.818 14 N -0.603 5.603 15 C -0.268 4.268 16 H 0.078 0.922 17 C -0.050 4.050 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.273 1.273 23 C 0.119 3.881 24 C 0.101 3.899 25 H 0.073 0.927 26 O -0.571 6.571 27 S 0.221 5.779 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.168 0.832 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.406 0.594 36 H 0.069 0.931 37 H 0.057 0.943 38 H -0.008 1.008 39 H 0.064 0.936 40 H 0.251 0.749 41 H 0.012 0.988 42 H 0.078 0.922 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.543 7.019 5.595 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.301 4.301 3 C -0.196 4.196 4 C -0.037 4.037 5 C -0.163 4.163 6 C -0.434 4.434 7 C 0.373 3.627 8 O -0.450 6.450 9 N -0.353 5.353 10 C 0.067 3.933 11 H 0.077 0.923 12 C -0.170 4.170 13 C 0.055 3.945 14 N -0.328 5.328 15 C -0.397 4.397 16 H 0.095 0.905 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.800 3.200 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.198 1.198 23 C -0.008 4.008 24 C 0.040 3.960 25 H 0.091 0.909 26 O -0.378 6.378 27 S 0.490 5.510 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.185 0.815 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.241 0.759 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.010 0.990 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.030 0.970 42 H 0.096 0.904 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -24.111 6.587 5.389 25.569 hybrid contribution 1.180 0.270 -0.507 1.312 sum -22.932 6.857 4.882 24.428 Atomic orbital electron populations 1.20572 0.84718 1.04861 1.04355 1.24689 1.03095 0.97064 1.05232 1.20008 0.90922 1.01127 1.07592 1.19780 0.96040 0.93107 0.94806 1.20700 0.97138 0.95495 1.02959 1.24272 0.96820 0.98715 1.23561 1.17354 0.87593 0.82247 0.75550 1.90757 1.43512 1.58464 1.52316 1.45746 1.08889 1.06067 1.74581 1.20691 0.82770 0.93831 0.96015 0.92330 1.22337 0.98730 1.00445 0.95446 1.20534 0.91030 0.85382 0.97548 1.44248 1.69270 1.07226 1.12038 1.19540 1.13852 0.87206 1.19137 0.90463 1.25894 0.95909 0.99634 1.03169 1.70200 1.23883 1.27934 1.36185 0.85277 0.77162 0.78960 0.78644 1.20050 1.22398 1.19813 1.21674 0.92333 0.99926 0.86837 1.22323 0.95332 0.94560 0.83754 0.90872 1.86461 1.86176 1.37709 1.27486 1.82768 0.92456 1.07427 1.68384 0.88990 0.89966 0.88613 0.81472 0.90700 0.91746 0.89201 0.75867 0.91257 0.92481 0.98972 0.91740 0.93987 0.96963 0.90373 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.31 71.24 0.73 0.04 16 2 C -0.18 -2.84 6.28 24.68 0.15 -2.68 16 3 C -0.17 -2.98 9.82 21.09 0.21 -2.78 16 4 C -0.02 -0.53 5.90 -20.42 -0.12 -0.65 16 5 C -0.10 -2.55 9.55 71.24 0.68 -1.87 16 6 C -0.31 -8.66 6.45 24.08 0.16 -8.50 16 7 C 0.58 20.27 7.74 86.42 0.67 20.94 16 8 O -0.57 -23.86 13.91 -4.35 -0.06 -23.92 16 9 N -0.70 -22.60 4.91 -446.46 -2.19 -24.79 16 10 C 0.17 6.46 2.12 45.02 0.10 6.55 16 11 H 0.06 2.60 7.58 -2.38 -0.02 2.58 16 12 C -0.13 -5.34 5.65 30.67 0.17 -5.17 16 13 C 0.18 9.17 5.31 86.36 0.46 9.63 16 14 N -0.60 -30.09 3.00 -699.11 -2.09 -32.19 16 15 C -0.27 -14.32 9.59 84.03 0.81 -13.52 16 16 H 0.08 3.90 7.89 -2.91 -0.02 3.87 16 17 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 18 N -0.94 -55.87 11.19 21.65 0.24 -55.63 16 19 Si 0.97 44.06 29.59 68.60 2.03 46.08 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 C 0.12 4.82 6.14 86.36 0.53 5.35 16 24 C 0.10 3.38 3.14 30.67 0.10 3.48 16 25 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 26 O -0.57 -16.16 13.16 -148.98 -1.96 -18.12 16 27 S 0.22 4.19 22.10 -56.49 -1.25 2.94 16 28 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 2.00 6.01 -2.39 -0.01 1.98 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 10.77 7.72 -92.71 -0.72 10.05 16 36 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.06 3.62 6.04 -2.39 -0.01 3.61 16 40 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 2.86 7.94 -2.39 -0.02 2.84 16 43 H 0.40 7.35 9.08 -74.06 -0.67 6.67 16 Total: -1.00 -72.33 362.12 -0.57 -72.90 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.34 Total: 24.28 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.06 Total: 8.45 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.05 Total: -112.61 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -2.02 Total: -42.04 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.25 Total: 2.94 kcal Total: -72.33 -0.57 -72.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090297461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.149 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds