Wall clock time and date at job start Tue Mar 31 2020 13:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37471 * 122.44547 * 2 1 4 4 C 1.36653 * 113.29505 * 180.19863 * 3 2 1 5 5 C 1.46575 * 125.45918 * 179.80043 * 4 3 2 6 6 O 1.21711 * 120.00144 * 359.72180 * 5 4 3 7 7 N 1.34776 * 120.00380 * 179.72360 * 5 4 3 8 8 C 1.46495 * 120.00439 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.44896 * 34.96046 * 8 7 5 10 10 C 1.53036 * 109.46071 * 274.99733 * 8 7 5 11 11 C 1.53188 * 109.31839 * 178.61424 * 10 8 7 12 12 N 1.46932 * 108.77457 * 54.63359 * 11 10 8 13 13 C 1.36934 * 120.62903 * 126.36990 * 12 11 10 14 14 H 1.08001 * 120.00159 * 207.72029 * 13 12 11 15 15 C 1.38809 * 120.00082 * 27.45188 * 13 12 11 16 16 N 1.31623 * 120.00212 * 17.77957 * 15 13 12 17 17 Si 1.86803 * 120.00174 * 197.78078 * 15 13 12 18 18 H 1.48503 * 109.46943 * 94.32041 * 17 15 13 19 19 H 1.48490 * 109.47331 * 214.31818 * 17 15 13 20 20 H 1.48497 * 109.46810 * 334.32356 * 17 15 13 21 21 C 1.46919 * 118.73734 * 306.64743 * 12 11 10 22 22 C 1.52764 * 109.01061 * 53.30654 * 21 12 11 23 23 H 1.09004 * 109.35397 * 65.50114 * 22 21 12 24 24 O 1.42900 * 109.56662 * 185.55192 * 22 21 12 25 25 S 1.75828 * 109.08028 * 359.54150 * 4 3 2 26 26 C 1.33817 * 122.45014 * 179.68853 * 2 1 3 27 27 C 1.50698 * 124.52137 * 359.97438 * 26 2 1 28 28 H 1.08992 * 109.47024 * 270.31086 * 1 2 3 29 29 H 1.08995 * 109.47100 * 30.31312 * 1 2 3 30 30 H 1.08997 * 109.46722 * 150.31546 * 1 2 3 31 31 H 1.08005 * 123.35632 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99517 * 359.97438 * 7 5 4 33 33 H 1.09008 * 109.49969 * 58.65971 * 10 8 7 34 34 H 1.09004 * 109.49986 * 298.56679 * 10 8 7 35 35 H 1.09000 * 109.58388 * 294.85066 * 11 10 8 36 36 H 1.09004 * 109.59250 * 174.42274 * 11 10 8 37 37 H 0.97000 * 120.00092 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.58542 * 173.14356 * 21 12 11 39 39 H 1.09002 * 109.58644 * 293.56772 * 21 12 11 40 40 H 0.96708 * 113.99840 * 299.96675 * 24 22 21 41 41 H 1.09004 * 109.46708 * 179.97438 * 27 26 2 42 42 H 1.08998 * 109.47422 * 299.99936 * 27 26 2 43 43 H 1.09002 * 109.47221 * 60.00531 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9428 -0.0044 5 6 4.6231 1.9863 -0.0096 6 8 4.3001 3.1597 -0.0154 7 7 5.9273 1.6464 -0.0080 8 6 6.9561 2.6894 -0.0126 9 1 6.6112 3.5419 0.5724 10 6 7.2247 3.1341 -1.4521 11 6 8.2757 4.2486 -1.4504 12 7 9.4670 3.7741 -0.7331 13 6 10.7026 3.8278 -1.3208 14 1 11.4673 3.1203 -1.0358 15 6 10.9707 4.7878 -2.2868 16 7 10.1961 5.8465 -2.3952 17 14 12.4306 4.5774 -3.4330 18 1 11.9828 3.9269 -4.6906 19 1 13.0118 5.9081 -3.7438 20 1 13.4577 3.7299 -2.7758 21 6 9.3064 3.2353 0.6243 22 6 8.2446 2.1373 0.6014 23 1 8.6035 1.3002 0.0025 24 8 7.9856 1.6940 1.9350 25 16 3.8970 -0.7891 0.0048 26 6 2.2251 -1.1292 0.0061 27 6 1.6356 -2.5161 0.0142 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8871 -0.5187 30 1 -0.3633 -0.8928 -0.5089 31 1 1.8019 2.1453 0.0004 32 1 6.1847 0.7112 -0.0029 33 1 6.3013 3.5055 -1.8965 34 1 7.5931 2.2876 -2.0317 35 1 7.8737 5.1290 -0.9489 36 1 8.5432 4.5003 -2.4766 37 1 10.3837 6.5176 -3.0701 38 1 10.2537 2.8187 0.9665 39 1 8.9902 4.0314 1.2984 40 1 8.7601 1.3310 2.3862 41 1 2.4393 -3.2524 0.0177 42 1 1.0209 -2.6445 0.9052 43 1 1.0203 -2.6546 -0.8748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090794412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:44 Heat of formation + Delta-G solvation = -65.030011 kcal Electronic energy + Delta-G solvation = -25197.838081 eV Core-core repulsion = 21561.824784 eV Total energy + Delta-G solvation = -3636.013298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23152 -39.80898 -39.01680 -37.01346 -35.84407 -33.92833 -33.21496 -31.78388 -30.55989 -30.18944 -27.63676 -26.42673 -24.72207 -23.95637 -23.36766 -21.74870 -21.22283 -19.73557 -19.07524 -18.75467 -18.06671 -17.59094 -16.91225 -16.78745 -16.20022 -15.98746 -15.69919 -15.30252 -15.28339 -14.97466 -14.77990 -14.51156 -14.08678 -13.92581 -13.69965 -13.59368 -13.45311 -13.31946 -13.00345 -12.76329 -12.73306 -12.69354 -12.63827 -12.40144 -12.14222 -12.06952 -11.90867 -11.83085 -11.47903 -11.20134 -11.04869 -10.59787 -10.21295 -9.63304 -9.33596 -8.79747 -7.91446 -5.38699 -0.53625 0.44655 0.87629 1.31022 1.48239 1.49718 1.59077 1.99481 2.11057 2.48428 3.07616 3.25642 3.59002 3.69864 3.82853 3.87547 4.00074 4.15913 4.18910 4.24907 4.34685 4.48913 4.57696 4.61852 4.70640 4.73790 4.79770 4.86250 4.88899 4.92959 4.99267 5.05740 5.09063 5.11767 5.31857 5.36120 5.38020 5.53761 5.57875 5.63979 6.32149 6.38330 6.86158 7.06012 7.07817 7.76090 8.28984 9.16325 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.002748 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.976829 B =10188.407578 C =10374.102819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.140 4.140 3 C -0.053 4.053 4 C -0.301 4.301 5 C 0.584 3.416 6 O -0.579 6.579 7 N -0.700 5.700 8 C 0.170 3.830 9 H 0.058 0.942 10 C -0.130 4.130 11 C 0.181 3.819 12 N -0.603 5.603 13 C -0.265 4.265 14 H 0.079 0.921 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.286 1.286 19 H -0.298 1.298 20 H -0.262 1.262 21 C 0.119 3.881 22 C 0.102 3.898 23 H 0.075 0.925 24 O -0.571 6.571 25 S 0.232 5.768 26 C -0.190 4.190 27 C -0.084 4.084 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.407 0.593 33 H 0.056 0.944 34 H 0.071 0.929 35 H -0.008 1.008 36 H 0.065 0.935 37 H 0.251 0.749 38 H 0.079 0.921 39 H 0.012 0.988 40 H 0.397 0.603 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.413 -21.109 5.791 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 C -0.087 4.087 4 C -0.421 4.421 5 C 0.372 3.628 6 O -0.461 6.461 7 N -0.349 5.349 8 C 0.065 3.935 9 H 0.076 0.924 10 C -0.170 4.170 11 C 0.054 3.946 12 N -0.328 5.328 13 C -0.394 4.394 14 H 0.096 0.904 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.800 3.200 18 H -0.212 1.212 19 H -0.225 1.225 20 H -0.187 1.187 21 C -0.008 4.008 22 C 0.041 3.959 23 H 0.093 0.907 24 O -0.378 6.378 25 S 0.502 5.498 26 C -0.310 4.310 27 C -0.142 4.142 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.159 0.841 32 H 0.243 0.757 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.010 0.990 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.030 0.970 40 H 0.248 0.752 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.824 -20.880 5.581 26.786 hybrid contribution 0.211 1.386 -0.536 1.501 sum -15.613 -19.494 5.046 25.480 Atomic orbital electron populations 1.20546 0.87373 1.03752 1.03151 1.18864 0.99336 0.90444 1.06555 1.20806 0.91039 1.00600 0.96279 1.24362 0.97607 0.98404 1.21687 1.17408 0.82392 0.87531 0.75434 1.90801 1.82341 1.20364 1.52603 1.45722 1.04648 1.10349 1.74229 1.20721 0.86482 0.90191 0.96086 0.92381 1.22346 0.99036 1.00280 0.95373 1.20541 0.84961 0.91495 0.97571 1.44247 1.03694 1.72979 1.11873 1.19585 0.91021 1.10298 1.18536 0.90376 1.25890 1.01138 0.94500 1.03176 1.70215 1.42276 1.09973 1.35794 0.85186 0.79195 0.76582 0.79068 1.21240 1.22523 1.18673 1.21600 0.97813 0.94574 0.86823 1.22229 0.93268 0.96684 0.83746 0.90719 1.86467 1.40612 1.83638 1.27103 1.82737 1.04065 0.95241 1.67784 1.24555 0.97911 1.01727 1.06813 1.20538 1.01541 0.87506 1.04626 0.90333 0.91420 0.89611 0.84081 0.75655 0.92553 0.91054 0.98987 0.91693 0.94012 0.90264 0.96967 0.75239 0.90225 0.88744 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.84 71.24 0.70 -0.38 16 2 C -0.14 -2.59 5.78 -21.05 -0.12 -2.71 16 3 C -0.05 -1.33 9.80 21.72 0.21 -1.12 16 4 C -0.30 -8.30 6.45 24.08 0.16 -8.14 16 5 C 0.58 20.58 7.75 86.42 0.67 21.25 16 6 O -0.58 -25.38 16.50 -4.38 -0.07 -25.45 16 7 N -0.70 -22.50 4.91 -446.48 -2.19 -24.70 16 8 C 0.17 6.42 2.12 45.02 0.10 6.51 16 9 H 0.06 2.59 7.57 -2.39 -0.02 2.57 16 10 C -0.13 -5.39 5.65 30.67 0.17 -5.21 16 11 C 0.18 9.15 5.32 86.36 0.46 9.61 16 12 N -0.60 -30.05 3.00 -699.93 -2.10 -32.15 16 13 C -0.26 -14.13 9.59 84.03 0.81 -13.32 16 14 H 0.08 3.93 7.89 -2.91 -0.02 3.91 16 15 C -0.05 -2.85 4.90 84.86 0.42 -2.43 16 16 N -0.94 -55.97 11.20 21.65 0.24 -55.73 16 17 Si 0.97 44.08 29.59 68.60 2.03 46.11 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 21 C 0.12 4.78 6.11 86.22 0.53 5.31 16 22 C 0.10 3.38 3.13 30.53 0.10 3.47 16 23 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 24 O -0.57 -16.02 13.16 -148.98 -1.96 -17.98 16 25 S 0.23 4.35 22.08 -56.49 -1.25 3.10 16 26 C -0.19 -3.02 6.28 24.68 0.15 -2.87 16 27 C -0.08 -0.68 9.38 71.24 0.67 -0.01 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.09 0.70 7.27 -2.39 -0.02 0.68 16 31 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.41 10.64 7.72 -92.71 -0.72 9.93 16 33 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.06 3.65 6.03 -2.39 -0.01 3.64 16 37 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.40 7.23 9.08 -74.05 -0.67 6.56 16 41 H 0.08 0.51 8.11 -2.39 -0.02 0.49 16 42 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.09 0.55 7.89 -2.39 -0.02 0.53 16 Total: -1.00 -73.63 364.83 -0.64 -74.27 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.35 Total: 22.57 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.01 Total: 9.95 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -4.05 Total: -112.57 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -2.03 Total: -43.43 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.25 Total: 3.10 kcal Total: -73.63 -0.64 -74.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090794412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.240 kcal (2) G-P(sol) polarization free energy of solvation -73.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds