Wall clock time and date at job start Tue Mar 31 2020 13:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33822 * 124.51895 * 2 1 4 4 C 1.37472 * 115.09637 * 179.97438 * 3 2 1 5 5 C 1.36648 * 113.29866 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.45552 * 179.97438 * 5 4 3 7 7 O 1.21699 * 120.00293 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99448 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99349 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46950 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.50927 * 304.89659 * 10 9 8 12 12 C 1.53288 * 109.55566 * 184.77158 * 10 9 8 13 13 N 1.47148 * 108.38852 * 187.74536 * 12 10 9 14 14 C 1.36938 * 120.98705 * 230.55902 * 13 12 10 15 15 H 1.08001 * 119.99863 * 153.29877 * 14 13 12 16 16 C 1.38813 * 119.99808 * 333.30057 * 14 13 12 17 17 N 1.31618 * 119.99580 * 343.54885 * 16 14 13 18 18 Si 1.86796 * 119.99837 * 163.55016 * 16 14 13 19 19 H 1.48500 * 109.47585 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46899 * 120.00079 * 18 16 14 21 21 H 1.48505 * 109.47044 * 239.99720 * 18 16 14 22 22 C 1.47159 * 118.03554 * 50.53264 * 13 12 10 23 23 C 1.53301 * 108.38149 * 309.47195 * 22 13 12 24 24 O 1.42952 * 109.22472 * 52.29798 * 23 22 13 25 25 S 1.70612 * 124.52405 * 180.27444 * 2 1 3 26 26 H 1.08999 * 109.46742 * 89.99603 * 1 2 3 27 27 H 1.09001 * 109.46809 * 209.99443 * 1 2 3 28 28 H 1.08999 * 109.46790 * 329.99980 * 1 2 3 29 29 H 1.07989 * 122.45067 * 359.95057 * 3 2 1 30 30 H 1.08001 * 123.35302 * 180.02562 * 4 3 2 31 31 H 0.96994 * 119.99992 * 359.97438 * 8 6 5 32 32 H 1.08995 * 109.47594 * 59.99992 * 9 8 6 33 33 H 1.09003 * 109.47312 * 299.99328 * 9 8 6 34 34 H 1.08995 * 109.47084 * 180.10167 * 11 10 9 35 35 H 1.09004 * 109.47359 * 300.10180 * 11 10 9 36 36 H 1.08997 * 109.47160 * 60.10079 * 11 10 9 37 37 H 1.09001 * 109.68566 * 307.47086 * 12 10 9 38 38 H 1.09003 * 109.68257 * 67.98344 * 12 10 9 39 39 H 0.97005 * 119.99361 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.68793 * 189.74305 * 22 13 12 41 41 H 1.09006 * 109.67927 * 69.18579 * 22 13 12 42 42 H 1.08999 * 109.50973 * 172.22266 * 23 22 13 43 43 H 1.09001 * 109.50729 * 292.32081 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3124 -0.9882 0.0018 7 8 6.2659 -0.2320 0.0016 8 7 5.5096 -2.3215 0.0023 9 6 6.8719 -2.8603 0.0031 10 6 6.8156 -4.3893 0.0030 11 6 5.9716 -4.8697 1.1852 12 6 8.2352 -4.9551 0.1240 13 7 8.1716 -6.4128 -0.0659 14 6 8.7595 -7.2666 0.8289 15 1 8.3770 -8.2694 0.9498 16 6 9.8469 -6.8432 1.5806 17 7 10.5151 -5.7671 1.2229 18 14 10.3620 -7.8007 3.0996 19 1 9.4545 -8.9615 3.2844 20 1 11.7561 -8.2836 2.9311 21 1 10.2844 -6.9178 4.2911 22 6 7.4571 -6.9262 -1.2455 23 6 6.0754 -6.2644 -1.2998 24 8 6.2297 -4.8455 -1.2187 25 16 2.4740 -1.4056 -0.0067 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.8429 2.0964 -0.0008 30 1 4.3550 1.6703 0.0010 31 1 4.7497 -2.9242 0.0029 32 1 7.3984 -2.5159 0.8932 33 1 7.3992 -2.5165 -0.8868 34 1 5.9334 -5.9590 1.1855 35 1 6.4189 -4.5216 2.1163 36 1 4.9612 -4.4707 1.0962 37 1 8.8732 -4.5127 -0.6411 38 1 8.6370 -4.7301 1.1119 39 1 11.2748 -5.4711 1.7484 40 1 7.3435 -8.0072 -1.1643 41 1 8.0167 -6.6822 -2.1486 42 1 5.5839 -6.5241 -2.2373 43 1 5.4711 -6.6142 -0.4628 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107698568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:28 Heat of formation + Delta-G solvation = -24.845915 kcal Electronic energy + Delta-G solvation = -25521.065091 eV Core-core repulsion = 21886.794307 eV Total energy + Delta-G solvation = -3634.270784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.86058 -38.89931 -37.81693 -34.96080 -34.34883 -32.42919 -31.63813 -31.26479 -28.04412 -27.85058 -26.33843 -25.39027 -23.67377 -23.24259 -21.75195 -20.87274 -19.51697 -18.64985 -17.99480 -17.07926 -16.30189 -15.87731 -15.58448 -15.13970 -15.04913 -14.74588 -14.31901 -14.22001 -14.02248 -13.78159 -13.52819 -13.33917 -13.05728 -12.83871 -12.61717 -12.55967 -12.22614 -12.07658 -11.88744 -11.60909 -11.21389 -11.12437 -11.03313 -10.84778 -10.67849 -10.32832 -10.24722 -10.08350 -9.92774 -9.55771 -9.07789 -9.00858 -8.80246 -8.72311 -8.55849 -6.75324 -5.86155 -3.30087 0.34209 1.25278 1.67589 2.23018 3.23963 3.26778 3.32893 3.40642 3.42272 4.22991 4.42151 4.46849 4.82356 4.88200 5.10256 5.12429 5.12770 5.32516 5.33540 5.45397 5.49491 5.55198 5.64833 5.77697 5.89565 5.92046 5.94422 6.00311 6.08883 6.12074 6.16624 6.28296 6.42161 6.53675 6.64637 6.73237 6.80720 7.05452 7.44850 7.57612 7.69750 7.86426 8.25044 8.31601 9.09174 9.72123 10.29496 11.21853 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002955 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.199067 B = 9473.142268 C = 9843.882130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.201 4.201 3 C -0.156 4.156 4 C -0.056 4.056 5 C -0.260 4.260 6 C 0.585 3.415 7 O -0.533 6.533 8 N -0.713 5.713 9 C 0.140 3.860 10 C 0.077 3.923 11 C -0.163 4.163 12 C 0.161 3.839 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.384 6.384 25 S 0.201 5.799 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.399 0.601 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.030 0.970 38 H 0.097 0.903 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.964 9.314 -2.335 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.321 4.321 3 C -0.186 4.186 4 C -0.089 4.089 5 C -0.381 4.381 6 C 0.370 3.630 7 O -0.412 6.412 8 N -0.364 5.364 9 C 0.016 3.984 10 C 0.036 3.964 11 C -0.220 4.220 12 C 0.034 3.966 13 N -0.314 5.314 14 C -0.383 4.383 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.215 1.215 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.304 6.304 25 S 0.468 5.532 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.234 0.766 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.463 8.428 -2.404 21.345 hybrid contribution 0.378 0.648 0.924 1.190 sum -19.085 9.076 -1.480 21.185 Atomic orbital electron populations 1.20389 0.87452 1.03454 1.03055 1.24250 1.01531 0.97924 1.08362 1.19954 0.92642 0.99522 1.06520 1.20749 0.96148 0.95238 0.96789 1.24676 0.96984 0.98041 1.18394 1.16959 0.86653 0.82478 0.76891 1.90831 1.41732 1.58092 1.50543 1.45917 1.10150 1.05867 1.74479 1.21410 0.82103 0.91593 1.03264 1.22564 0.97712 0.91573 0.84535 1.22216 0.98023 1.03305 0.98475 1.21277 0.88695 0.83680 1.02951 1.43999 1.62755 1.01444 1.23227 1.19192 1.08436 0.96234 1.14462 0.91383 1.25057 0.95582 0.98295 1.00605 1.70021 1.19889 1.25958 1.38625 0.86222 0.78156 0.79323 0.83065 1.20251 1.21635 1.21456 1.21603 0.91731 0.97342 0.91056 1.23044 0.98244 0.81593 1.00359 1.87825 1.82640 1.21950 1.37960 1.83084 0.94406 1.07519 1.68150 0.90419 0.91069 0.90336 0.83926 0.82939 0.76569 0.89663 0.90483 0.90625 0.91737 0.94116 0.95165 0.88527 0.93456 0.92019 0.95617 0.90146 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.31 36.01 0.37 -0.12 16 2 C -0.20 -1.77 6.28 -35.86 -0.23 -1.99 16 3 C -0.16 -1.45 10.00 -41.41 -0.41 -1.86 16 4 C -0.06 -0.65 10.01 -40.44 -0.40 -1.06 16 5 C -0.26 -3.40 6.45 -36.79 -0.24 -3.64 16 6 C 0.58 9.42 7.78 -12.89 -0.10 9.32 16 7 O -0.53 -10.32 16.84 5.19 0.09 -10.23 16 8 N -0.71 -11.00 5.19 -61.64 -0.32 -11.32 16 9 C 0.14 2.45 4.85 -4.04 -0.02 2.43 16 10 C 0.08 1.44 0.78 -90.47 -0.07 1.37 16 11 C -0.16 -2.78 7.86 37.16 0.29 -2.49 16 12 C 0.16 3.72 4.11 -3.54 -0.01 3.71 16 13 N -0.59 -14.27 2.56 -171.82 -0.44 -14.71 16 14 C -0.25 -6.70 9.65 -15.06 -0.15 -6.84 16 15 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 16 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 17 N -0.90 -25.54 11.14 55.49 0.62 -24.92 16 18 Si 0.90 21.16 29.58 -169.99 -5.03 16.13 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.11 2.22 6.74 -3.53 -0.02 2.20 16 23 C 0.05 0.78 6.60 37.31 0.25 1.03 16 24 O -0.38 -7.12 10.17 -35.23 -0.36 -7.48 16 25 S 0.20 2.02 22.10 -107.50 -2.38 -0.36 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.40 5.51 6.11 -40.82 -0.25 5.26 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.07 1.40 6.11 -51.93 -0.32 1.08 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.58 6.59 -51.93 -0.34 0.24 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.10 2.47 6.16 -51.93 -0.32 2.15 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.80 6.26 -51.93 -0.32 0.47 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -31.13 360.05 -9.39 -40.52 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.17 Total: 4.88 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.83 Total: 2.07 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.14 Total: -50.96 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.27 Total: -17.71 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.38 Total: -0.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.13 -9.39 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107698568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.674 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds