Wall clock time and date at job start Tue Mar 31 2020 13:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33822 * 124.51895 * 2 1 4 4 C 1.37472 * 115.09637 * 179.97438 * 3 2 1 5 5 C 1.36648 * 113.29866 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.45552 * 179.97438 * 5 4 3 7 7 O 1.21699 * 120.00293 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99448 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99349 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46950 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.50927 * 304.89659 * 10 9 8 12 12 C 1.53288 * 109.55566 * 184.77158 * 10 9 8 13 13 N 1.47148 * 108.38852 * 187.74536 * 12 10 9 14 14 C 1.36938 * 120.98705 * 230.55902 * 13 12 10 15 15 H 1.08001 * 119.99863 * 153.29877 * 14 13 12 16 16 C 1.38813 * 119.99808 * 333.30057 * 14 13 12 17 17 N 1.31618 * 119.99580 * 343.54885 * 16 14 13 18 18 Si 1.86796 * 119.99837 * 163.55016 * 16 14 13 19 19 H 1.48500 * 109.47585 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46899 * 120.00079 * 18 16 14 21 21 H 1.48505 * 109.47044 * 239.99720 * 18 16 14 22 22 C 1.47159 * 118.03554 * 50.53264 * 13 12 10 23 23 C 1.53301 * 108.38149 * 309.47195 * 22 13 12 24 24 O 1.42952 * 109.22472 * 52.29798 * 23 22 13 25 25 S 1.70612 * 124.52405 * 180.27444 * 2 1 3 26 26 H 1.08999 * 109.46742 * 89.99603 * 1 2 3 27 27 H 1.09001 * 109.46809 * 209.99443 * 1 2 3 28 28 H 1.08999 * 109.46790 * 329.99980 * 1 2 3 29 29 H 1.07989 * 122.45067 * 359.95057 * 3 2 1 30 30 H 1.08001 * 123.35302 * 180.02562 * 4 3 2 31 31 H 0.96994 * 119.99992 * 359.97438 * 8 6 5 32 32 H 1.08995 * 109.47594 * 59.99992 * 9 8 6 33 33 H 1.09003 * 109.47312 * 299.99328 * 9 8 6 34 34 H 1.08995 * 109.47084 * 180.10167 * 11 10 9 35 35 H 1.09004 * 109.47359 * 300.10180 * 11 10 9 36 36 H 1.08997 * 109.47160 * 60.10079 * 11 10 9 37 37 H 1.09001 * 109.68566 * 307.47086 * 12 10 9 38 38 H 1.09003 * 109.68257 * 67.98344 * 12 10 9 39 39 H 0.97005 * 119.99361 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.68793 * 189.74305 * 22 13 12 41 41 H 1.09006 * 109.67927 * 69.18579 * 22 13 12 42 42 H 1.08999 * 109.50973 * 172.22266 * 23 22 13 43 43 H 1.09001 * 109.50729 * 292.32081 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3124 -0.9882 0.0018 7 8 6.2659 -0.2320 0.0016 8 7 5.5096 -2.3215 0.0023 9 6 6.8719 -2.8603 0.0031 10 6 6.8156 -4.3893 0.0030 11 6 5.9716 -4.8697 1.1852 12 6 8.2352 -4.9551 0.1240 13 7 8.1716 -6.4128 -0.0659 14 6 8.7595 -7.2666 0.8289 15 1 8.3770 -8.2694 0.9498 16 6 9.8469 -6.8432 1.5806 17 7 10.5151 -5.7671 1.2229 18 14 10.3620 -7.8007 3.0996 19 1 9.4545 -8.9615 3.2844 20 1 11.7561 -8.2836 2.9311 21 1 10.2844 -6.9178 4.2911 22 6 7.4571 -6.9262 -1.2455 23 6 6.0754 -6.2644 -1.2998 24 8 6.2297 -4.8455 -1.2187 25 16 2.4740 -1.4056 -0.0067 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.8429 2.0964 -0.0008 30 1 4.3550 1.6703 0.0010 31 1 4.7497 -2.9242 0.0029 32 1 7.3984 -2.5159 0.8932 33 1 7.3992 -2.5165 -0.8868 34 1 5.9334 -5.9590 1.1855 35 1 6.4189 -4.5216 2.1163 36 1 4.9612 -4.4707 1.0962 37 1 8.8732 -4.5127 -0.6411 38 1 8.6370 -4.7301 1.1119 39 1 11.2748 -5.4711 1.7484 40 1 7.3435 -8.0072 -1.1643 41 1 8.0167 -6.6822 -2.1486 42 1 5.5839 -6.5241 -2.2373 43 1 5.4711 -6.6142 -0.4628 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107698568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:27 Heat of formation + Delta-G solvation = -44.780750 kcal Electronic energy + Delta-G solvation = -25521.929530 eV Core-core repulsion = 21886.794307 eV Total energy + Delta-G solvation = -3635.135224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22703 -40.30516 -38.70153 -36.57320 -35.98678 -33.49517 -33.21293 -32.73325 -29.61323 -28.91394 -27.98327 -26.78260 -25.00519 -24.46751 -23.14401 -22.24759 -20.69697 -20.06873 -19.00797 -18.91864 -17.50195 -17.26036 -16.94284 -16.65845 -16.25239 -16.17926 -15.81103 -15.59343 -15.25062 -14.97167 -14.87645 -14.66896 -14.45214 -14.02635 -13.94637 -13.53793 -13.28152 -13.19354 -12.94934 -12.91344 -12.81320 -12.72583 -12.55714 -12.43605 -12.11876 -11.97545 -11.89084 -11.83800 -11.33225 -11.10611 -10.77167 -10.51438 -10.32031 -9.62105 -9.54933 -8.71826 -7.89735 -5.37070 -0.52582 0.44674 0.88933 1.37360 1.45347 1.47829 1.57744 1.99585 2.12940 2.48073 2.76426 3.25039 3.47989 3.72029 3.86984 3.93110 3.99285 4.07242 4.27766 4.40204 4.40905 4.45300 4.52602 4.59919 4.70160 4.70519 4.75692 4.76222 4.92941 5.02859 5.07656 5.10145 5.10247 5.19377 5.21042 5.23310 5.33416 5.42680 5.52523 5.61919 6.29116 6.34697 6.36712 7.02074 7.06871 7.75838 8.30234 9.16192 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002955 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.199067 B = 9473.142268 C = 9843.882130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.184 4.184 3 C -0.167 4.167 4 C -0.051 4.051 5 C -0.305 4.305 6 C 0.584 3.416 7 O -0.578 6.578 8 N -0.704 5.704 9 C 0.148 3.852 10 C 0.093 3.907 11 C -0.154 4.154 12 C 0.169 3.831 13 N -0.607 5.607 14 C -0.257 4.257 15 H 0.075 0.925 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.295 1.295 21 H -0.291 1.291 22 C 0.102 3.898 23 C 0.051 3.949 24 O -0.387 6.387 25 S 0.227 5.773 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.409 0.591 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.073 0.927 37 H -0.007 1.007 38 H 0.068 0.932 39 H 0.250 0.750 40 H 0.074 0.926 41 H 0.012 0.988 42 H 0.118 0.882 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.947 8.905 -2.178 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.304 4.304 3 C -0.196 4.196 4 C -0.086 4.086 5 C -0.425 4.425 6 C 0.372 3.628 7 O -0.460 6.460 8 N -0.355 5.355 9 C 0.024 3.976 10 C 0.052 3.948 11 C -0.212 4.212 12 C 0.042 3.958 13 N -0.331 5.331 14 C -0.387 4.387 15 H 0.092 0.908 16 C -0.246 4.246 17 N -0.583 5.583 18 Si 0.795 3.205 19 H -0.187 1.187 20 H -0.223 1.223 21 H -0.218 1.218 22 C -0.023 4.023 23 C -0.026 4.026 24 O -0.307 6.307 25 S 0.494 5.506 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.187 0.813 30 H 0.165 0.835 31 H 0.246 0.754 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.011 0.989 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.030 0.970 42 H 0.136 0.864 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.503 7.981 -2.265 24.924 hybrid contribution 1.522 0.778 0.785 1.881 sum -21.981 8.758 -1.481 23.708 Atomic orbital electron populations 1.20579 0.84844 1.04864 1.04365 1.24766 1.03147 0.97072 1.05431 1.20150 0.91449 1.01093 1.06916 1.20965 0.97453 0.94687 0.95465 1.24416 0.96580 0.99275 1.22235 1.17395 0.87708 0.82053 0.75615 1.90795 1.43599 1.58954 1.52657 1.45718 1.09285 1.06089 1.74443 1.21105 0.83359 0.91042 1.02091 1.22199 0.95122 0.91795 0.85721 1.22122 0.99299 1.02654 0.97088 1.21021 0.91035 0.83727 0.99974 1.44251 1.62966 1.01513 1.24353 1.19538 1.08036 0.96656 1.14474 0.90766 1.25814 0.96016 0.99417 1.03352 1.70189 1.20498 1.27796 1.39771 0.85218 0.77445 0.78353 0.79505 1.18655 1.22261 1.21761 1.21824 0.93087 0.98460 0.88974 1.23138 0.96234 0.80254 1.02966 1.87836 1.82111 1.23032 1.37682 1.82909 0.92571 1.07466 1.67634 0.88982 0.90029 0.88596 0.81312 0.83501 0.75387 0.90599 0.92197 0.91525 0.92391 0.90819 0.98856 0.91404 0.94083 0.90806 0.96970 0.86380 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.31 71.24 0.73 0.10 16 2 C -0.18 -2.62 6.28 24.68 0.15 -2.47 16 3 C -0.17 -2.65 10.00 21.08 0.21 -2.44 16 4 C -0.05 -1.15 10.01 21.72 0.22 -0.93 16 5 C -0.31 -7.77 6.45 24.08 0.16 -7.62 16 6 C 0.58 19.17 7.78 86.42 0.67 19.84 16 7 O -0.58 -23.45 16.84 -4.34 -0.07 -23.52 16 8 N -0.70 -21.70 5.19 -467.16 -2.42 -24.12 16 9 C 0.15 5.41 4.85 86.38 0.42 5.83 16 10 C 0.09 3.49 0.78 -10.70 -0.01 3.48 16 11 C -0.15 -5.09 7.86 71.98 0.57 -4.53 16 12 C 0.17 8.19 4.11 86.35 0.35 8.55 16 13 N -0.61 -29.75 2.56 -697.53 -1.79 -31.53 16 14 C -0.26 -13.66 9.65 84.03 0.81 -12.85 16 15 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 16 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 17 N -0.94 -55.28 11.14 21.65 0.24 -55.04 16 18 Si 0.97 44.13 29.58 68.60 2.03 46.16 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 C 0.10 4.08 6.74 86.35 0.58 4.66 16 23 C 0.05 1.63 6.60 72.08 0.48 2.11 16 24 O -0.39 -13.87 10.17 -148.98 -1.52 -15.38 16 25 S 0.23 3.99 22.10 -56.49 -1.25 2.74 16 26 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.17 1.75 8.06 -2.92 -0.02 1.72 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.41 10.72 6.11 -92.71 -0.57 10.15 16 32 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 34 H 0.07 2.34 6.11 -2.39 -0.01 2.33 16 35 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.07 1.93 6.59 -2.39 -0.02 1.92 16 37 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.07 3.67 6.16 -2.39 -0.01 3.65 16 39 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 40 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 41 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.06 1.85 6.26 -2.39 -0.01 1.84 16 Total: -1.00 -70.29 360.05 1.45 -68.84 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.46 Total: 20.47 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.77 Total: 11.39 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -3.97 Total: -110.70 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.59 Total: -38.90 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.25 Total: 2.74 kcal Total: -70.29 1.45 -68.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107698568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.062 kcal (2) G-P(sol) polarization free energy of solvation -70.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds