Wall clock time and date at job start Tue Mar 31 2020 13:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33816 * 122.44852 * 2 1 4 4 S 1.70619 * 110.95716 * 179.78331 * 3 2 1 5 5 C 1.75839 * 91.56084 * 0.30619 * 4 3 2 6 6 C 1.46588 * 125.45750 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99735 * 179.69231 * 6 5 4 8 8 N 1.34772 * 119.99766 * 359.69352 * 6 5 4 9 9 C 1.46502 * 119.99716 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47269 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.55047 * 60.12739 * 10 9 8 12 12 C 1.53290 * 109.51494 * 180.25274 * 10 9 8 13 13 N 1.47232 * 108.40798 * 172.23175 * 12 10 9 14 14 C 1.36930 * 121.03328 * 129.46021 * 13 12 10 15 15 H 1.08002 * 120.00530 * 206.18598 * 14 13 12 16 16 C 1.38816 * 119.99608 * 26.18827 * 14 13 12 17 17 N 1.31615 * 120.00526 * 16.88476 * 16 14 13 18 18 Si 1.86806 * 119.99896 * 196.88547 * 16 14 13 19 19 H 1.48493 * 109.47161 * 89.99376 * 18 16 14 20 20 H 1.48497 * 109.47448 * 210.00216 * 18 16 14 21 21 H 1.48503 * 109.46954 * 330.00010 * 18 16 14 22 22 C 1.47154 * 117.98230 * 309.48797 * 13 12 10 23 23 C 1.53298 * 108.41825 * 50.51870 * 22 13 12 24 24 O 1.42959 * 109.51371 * 300.00367 * 10 9 8 25 25 C 1.36648 * 109.08380 * 359.69684 * 5 4 3 26 26 H 1.09000 * 109.47436 * 269.97708 * 1 2 3 27 27 H 1.09004 * 109.47621 * 29.98178 * 1 2 3 28 28 H 1.09005 * 109.47116 * 149.97576 * 1 2 3 29 29 H 1.07997 * 124.52297 * 0.02562 * 3 2 1 30 30 H 0.97000 * 120.00195 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.46877 * 59.99845 * 9 8 6 32 32 H 1.08999 * 109.47195 * 299.99813 * 9 8 6 33 33 H 1.09000 * 109.47604 * 299.87595 * 11 10 9 34 34 H 1.09004 * 109.47201 * 59.87360 * 11 10 9 35 35 H 1.09000 * 109.47333 * 179.87598 * 11 10 9 36 36 H 1.09001 * 109.68414 * 291.94993 * 12 10 9 37 37 H 1.09001 * 109.68139 * 52.50357 * 12 10 9 38 38 H 0.97002 * 120.00383 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.68310 * 290.77188 * 22 13 12 40 40 H 1.09005 * 109.67869 * 170.25970 * 22 13 12 41 41 H 1.09001 * 109.51044 * 67.59999 * 23 22 13 42 42 H 1.09000 * 109.51036 * 187.70217 * 23 22 13 43 43 H 1.07992 * 123.35120 * 180.24770 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 16 3.8969 0.7893 0.0060 5 6 3.5937 -0.9427 -0.0008 6 6 4.6232 -1.9862 -0.0003 7 8 4.3002 -3.1595 0.0003 8 7 5.9273 -1.6462 -0.0005 9 6 6.9562 -2.6891 0.0006 10 6 8.3412 -2.0391 -0.0005 11 6 8.4999 -1.1700 1.2487 12 6 9.4186 -3.1295 -0.0057 13 7 10.7296 -2.4869 -0.1955 14 6 11.7785 -2.7626 0.6404 15 1 12.5618 -2.0328 0.7830 16 6 11.8352 -3.9803 1.3046 17 7 11.0909 -4.9869 0.8982 18 14 12.9678 -4.1902 2.7752 19 1 12.2385 -3.8288 4.0172 20 1 13.4154 -5.6038 2.8575 21 1 14.1499 -3.3049 2.6199 22 6 10.8787 -1.5385 -1.3107 23 6 9.7302 -0.5255 -1.2418 24 8 8.4871 -1.2277 -1.1684 25 6 2.2446 -1.1601 -0.0004 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.8024 2.1232 0.0004 30 1 6.1847 -0.7109 -0.0013 31 1 6.8456 -3.3094 -0.8888 32 1 6.8455 -3.3078 0.8911 33 1 7.7364 -0.3921 1.2496 34 1 8.3886 -1.7893 2.1388 35 1 9.4878 -0.7093 1.2477 36 1 9.4057 -3.6630 0.9447 37 1 9.2305 -3.8275 -0.8216 38 1 11.1303 -5.8376 1.3626 39 1 10.8377 -2.0762 -2.2579 40 1 11.8327 -1.0182 -1.2250 41 1 9.8483 0.0992 -0.3564 42 1 9.7433 0.1009 -2.1338 43 1 1.8020 -2.1451 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107921923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:25 Heat of formation + Delta-G solvation = -25.290137 kcal Electronic energy + Delta-G solvation = -25507.963782 eV Core-core repulsion = 21873.673735 eV Total energy + Delta-G solvation = -3634.290047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.88883 -38.96116 -38.03503 -34.95471 -34.34306 -32.02622 -31.28280 -30.97054 -28.14071 -27.96430 -26.67681 -25.86759 -23.87392 -23.23881 -21.29764 -20.58078 -19.18782 -18.91159 -18.28833 -17.08439 -16.27720 -15.94763 -15.65338 -15.16891 -14.93867 -14.63424 -14.29730 -14.10127 -13.99571 -13.69494 -13.53603 -13.37511 -13.06756 -12.85029 -12.58376 -12.41112 -12.21615 -12.18098 -11.88052 -11.60690 -11.21662 -11.11384 -11.02817 -10.84014 -10.69571 -10.33025 -10.25650 -10.09880 -9.92562 -9.56313 -9.12961 -9.06196 -8.84498 -8.60782 -8.55655 -6.76451 -5.86101 -3.29626 0.35575 1.29533 1.69992 2.17995 3.21411 3.24938 3.33424 3.40255 3.41662 4.21970 4.42069 4.67478 4.72723 4.97684 5.06392 5.12131 5.30928 5.32253 5.32643 5.44543 5.48945 5.61640 5.65649 5.71386 5.90195 5.92029 5.98788 6.05265 6.10775 6.12101 6.17763 6.28281 6.41627 6.52967 6.64191 6.73359 6.80585 7.05270 7.44448 7.57126 7.69257 7.85528 8.23953 8.31136 9.08887 9.72004 10.29259 11.21916 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.002895 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.360111 B = 9671.067536 C =10134.671767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.117 4.117 3 C -0.240 4.240 4 S 0.202 5.798 5 C -0.254 4.254 6 C 0.584 3.416 7 O -0.533 6.533 8 N -0.711 5.711 9 C 0.140 3.860 10 C 0.077 3.923 11 C -0.163 4.163 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.069 0.931 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.384 6.384 25 C -0.058 4.058 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.167 0.833 30 H 0.400 0.600 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.256 0.744 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.914 13.732 -1.474 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C -0.378 4.378 4 S 0.471 5.529 5 C -0.375 4.375 6 C 0.369 3.631 7 O -0.411 6.411 8 N -0.362 5.362 9 C 0.017 3.983 10 C 0.036 3.964 11 C -0.220 4.220 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.384 4.384 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.304 6.304 25 C -0.092 4.092 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.184 0.816 30 H 0.235 0.765 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.873 13.636 -1.539 20.983 hybrid contribution -0.373 -0.507 0.885 1.086 sum -16.247 13.129 -0.654 20.899 Atomic orbital electron populations 1.20507 0.89445 1.02857 1.02406 1.18783 0.97915 0.91543 1.04827 1.25129 0.98672 1.03287 1.10710 1.83113 1.03767 0.98411 1.67642 1.24707 0.98101 0.97205 1.17457 1.16951 0.81783 0.87354 0.76964 1.90831 1.81713 1.18113 1.50488 1.45862 1.05091 1.10921 1.74351 1.21430 0.84144 0.89528 1.03238 1.22562 0.94849 0.93592 0.85359 1.22219 1.02210 0.99647 0.97946 1.21304 0.82011 0.90545 1.02816 1.44011 1.07705 1.49563 1.30132 1.19165 1.02126 0.97973 1.19098 0.91370 1.25043 0.99089 0.94803 1.00594 1.70009 1.42943 1.01615 1.39955 0.86275 0.80364 0.77064 0.82983 1.21357 1.21670 1.20437 1.21599 0.96269 0.92050 0.91820 1.23045 0.85366 0.94412 1.00394 1.87814 1.37019 1.62714 1.42845 1.20657 0.91002 0.99974 0.97531 0.91158 0.91561 0.91252 0.81556 0.76513 0.90494 0.89725 0.94047 0.91774 0.90669 0.88480 0.95165 0.93395 0.95622 0.92028 0.93359 0.90126 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.13 36.00 0.36 -0.25 16 2 C -0.12 -1.10 5.78 -106.46 -0.62 -1.72 16 3 C -0.24 -2.07 10.67 29.18 0.31 -1.76 16 4 S 0.20 1.98 22.16 -107.50 -2.38 -0.40 16 5 C -0.25 -3.29 6.45 -36.79 -0.24 -3.53 16 6 C 0.58 9.32 7.78 -12.90 -0.10 9.22 16 7 O -0.53 -10.24 16.84 5.19 0.09 -10.15 16 8 N -0.71 -10.89 5.15 -61.65 -0.32 -11.20 16 9 C 0.14 2.44 4.82 -4.04 -0.02 2.42 16 10 C 0.08 1.44 0.76 -90.47 -0.07 1.37 16 11 C -0.16 -2.78 7.92 37.16 0.29 -2.49 16 12 C 0.16 3.70 4.12 -3.49 -0.01 3.68 16 13 N -0.59 -14.24 2.57 -171.76 -0.44 -14.69 16 14 C -0.25 -6.70 9.65 -15.06 -0.15 -6.85 16 15 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 16 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 17 N -0.90 -25.53 11.14 55.49 0.62 -24.91 16 18 Si 0.90 21.17 29.59 -169.99 -5.03 16.15 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 C 0.11 2.21 6.73 -3.53 -0.02 2.19 16 23 C 0.05 0.78 6.60 37.31 0.25 1.03 16 24 O -0.38 -7.05 9.97 -35.23 -0.35 -7.40 16 25 C -0.06 -0.68 9.80 -40.43 -0.40 -1.07 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 29 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.40 5.48 6.32 -40.82 -0.26 5.23 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.04 0.60 6.88 -51.93 -0.36 0.24 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.39 6.11 -51.93 -0.32 1.07 16 36 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 41 H 0.05 0.79 6.25 -51.93 -0.32 0.47 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -30.91 360.10 -9.07 -39.98 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.19 Total: 4.94 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.49 Total: 2.27 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.14 Total: -50.80 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.26 Total: -17.55 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.38 Total: -0.40 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.91 -9.07 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107921923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.686 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds