Wall clock time and date at job start Tue Mar 31 2020 13:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37471 * 123.35359 * 2 1 4 4 C 1.33820 * 115.09961 * 180.29322 * 3 2 1 5 5 S 1.70617 * 110.95522 * 359.72913 * 4 3 2 6 6 C 1.36653 * 123.35096 * 179.78299 * 2 1 3 7 7 C 1.46578 * 125.45688 * 359.97438 * 6 2 1 8 8 O 1.21710 * 120.00177 * 351.25980 * 7 6 2 9 9 N 1.34777 * 120.00323 * 171.26073 * 7 6 2 10 10 C 1.47512 * 118.76236 * 173.56226 * 9 7 6 11 11 C 1.53566 * 111.02948 * 221.60764 * 10 9 7 12 12 C 1.51538 * 109.58112 * 39.97760 * 11 10 9 13 13 O 1.42159 * 108.75210 * 268.59910 * 12 11 10 14 14 C 1.38016 * 119.44240 * 87.23370 * 13 12 11 15 15 H 1.08994 * 109.46906 * 56.56566 * 14 13 12 16 16 C 1.52995 * 109.47053 * 176.56929 * 14 13 12 17 17 N 1.46505 * 109.46812 * 300.00546 * 16 14 13 18 18 C 1.36931 * 120.00088 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99918 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00193 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99794 * 359.72400 * 20 18 17 22 22 Si 1.86802 * 120.00047 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47232 * 179.72363 * 22 20 18 24 24 H 1.48502 * 109.47005 * 299.72108 * 22 20 18 25 25 H 1.48498 * 109.47257 * 59.71883 * 22 20 18 26 26 C 1.45128 * 118.75275 * 353.54057 * 9 7 6 27 27 H 1.08997 * 109.47032 * 270.21407 * 1 2 3 28 28 H 1.08994 * 109.46804 * 30.21635 * 1 2 3 29 29 H 1.09000 * 109.47097 * 150.21732 * 1 2 3 30 30 H 1.08002 * 122.44901 * 0.02562 * 3 2 1 31 31 H 1.07998 * 124.51416 * 179.74903 * 4 3 2 32 32 H 1.08994 * 109.16353 * 342.00938 * 10 9 7 33 33 H 1.09004 * 109.16401 * 101.20672 * 10 9 7 34 34 H 1.08994 * 109.45178 * 160.01152 * 11 10 9 35 35 H 1.09001 * 109.45352 * 279.96456 * 11 10 9 36 36 H 1.08993 * 109.58963 * 28.37614 * 12 11 10 37 37 H 1.08997 * 109.58763 * 148.67009 * 12 11 10 38 38 H 1.08997 * 109.47265 * 180.02562 * 16 14 13 39 39 H 1.09000 * 109.47643 * 60.00447 * 16 14 13 40 40 H 0.96996 * 119.99810 * 0.02562 * 17 16 14 41 41 H 0.97000 * 120.00301 * 0.27319 * 21 20 18 42 42 H 1.09003 * 109.45951 * 330.72123 * 26 9 7 43 43 H 1.08997 * 109.44970 * 210.75611 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2629 1.1483 0.0000 4 6 3.5872 0.9562 -0.0062 5 16 3.9624 -0.7082 -0.0050 6 6 2.2583 -1.1415 0.0043 7 6 1.7285 -2.5081 0.0100 8 8 0.5372 -2.6983 0.1714 9 7 2.5604 -3.5542 -0.1634 10 6 2.0247 -4.9201 -0.0101 11 6 3.0098 -5.8157 0.7552 12 6 3.6370 -5.0285 1.8880 13 8 4.8362 -4.4273 1.4176 14 6 4.7810 -3.1907 0.8071 15 1 4.3130 -2.4734 1.4812 16 6 6.1988 -2.7244 0.4705 17 7 6.9860 -2.6265 1.7022 18 6 8.2943 -2.2259 1.6486 19 1 8.7458 -1.9818 0.6983 20 6 9.0403 -2.1336 2.8156 21 7 8.4885 -2.4259 3.9742 22 14 10.8249 -1.5865 2.7424 23 1 11.3924 -1.5643 4.1145 24 1 11.5992 -2.5346 1.9018 25 1 10.9017 -0.2257 2.1529 26 6 3.9493 -3.2943 -0.4944 27 1 -0.3633 0.0038 1.0276 28 1 -0.3633 0.8880 -0.5172 29 1 -0.3633 -0.8919 -0.5104 30 1 1.8202 2.1334 0.0004 31 1 4.3205 1.7490 -0.0110 32 1 1.0826 -4.8757 0.5362 33 1 1.8454 -5.3469 -0.9970 34 1 2.4778 -6.6757 1.1618 35 1 3.7904 -6.1594 0.0766 36 1 2.9463 -4.2540 2.2212 37 1 3.8625 -5.6986 2.7176 38 1 6.1553 -1.7477 -0.0112 39 1 6.6668 -3.4418 -0.2037 40 1 6.5806 -2.8461 2.5556 41 1 7.5617 -2.7096 4.0122 42 1 4.0217 -2.3575 -1.0470 43 1 4.3347 -4.1086 -1.1079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199715353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:10 Heat of formation + Delta-G solvation = -37.523680 kcal Electronic energy + Delta-G solvation = -26557.174018 eV Core-core repulsion = 22922.353485 eV Total energy + Delta-G solvation = -3634.820534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.85848 -40.20131 -38.70252 -36.99433 -36.44933 -34.87012 -32.81898 -31.82315 -30.35883 -29.39868 -27.70843 -26.48239 -24.85831 -24.41633 -23.14814 -22.54424 -21.30376 -19.64353 -19.44156 -19.17567 -18.06690 -17.66310 -17.37029 -16.97215 -16.53045 -16.10519 -15.87379 -15.68632 -15.50449 -15.19985 -14.89286 -14.54560 -14.47508 -14.10363 -14.02923 -13.93679 -13.57290 -13.30316 -13.19333 -13.01283 -12.70991 -12.57718 -12.44667 -12.42472 -12.07597 -11.86511 -11.70457 -11.48941 -11.25780 -11.05132 -10.87396 -10.69982 -10.00425 -9.69077 -9.28726 -9.06053 -8.34333 -5.27911 -0.52632 0.51742 0.99317 1.32159 1.61642 1.71893 1.72843 1.87777 1.99955 2.56273 2.74804 3.26530 3.45913 3.48681 3.70163 3.74348 3.91529 3.94687 3.96652 4.15379 4.18783 4.22046 4.25818 4.36280 4.37811 4.50688 4.62188 4.65228 4.73702 4.76331 4.78685 4.97352 4.98252 4.99847 5.04714 5.10965 5.29537 5.36424 5.47145 5.62140 6.04581 6.53484 6.57473 6.86831 7.12807 8.03197 8.15732 9.17302 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.004611 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.729776 B = 6070.511091 C = 7632.997377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.021 4.021 3 C -0.157 4.157 4 C -0.257 4.257 5 S 0.240 5.760 6 C -0.327 4.327 7 C 0.585 3.415 8 O -0.555 6.555 9 N -0.605 5.605 10 C 0.112 3.888 11 C -0.153 4.153 12 C 0.066 3.934 13 O -0.391 6.391 14 C 0.089 3.911 15 H 0.042 0.958 16 C 0.171 3.829 17 N -0.747 5.747 18 C -0.331 4.331 19 H 0.072 0.928 20 C -0.103 4.103 21 N -0.976 5.976 22 Si 1.127 2.873 23 H -0.296 1.296 24 H -0.278 1.278 25 H -0.275 1.275 26 C 0.066 3.934 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.165 0.835 31 H 0.182 0.818 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.034 0.966 40 H 0.361 0.639 41 H 0.242 0.758 42 H 0.102 0.898 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.317 0.645 -12.206 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.038 4.038 3 C -0.187 4.187 4 C -0.394 4.394 5 S 0.511 5.489 6 C -0.447 4.447 7 C 0.375 3.625 8 O -0.436 6.436 9 N -0.336 5.336 10 C -0.009 4.009 11 C -0.191 4.191 12 C -0.010 4.010 13 O -0.309 6.309 14 C 0.028 3.972 15 H 0.060 0.940 16 C 0.043 3.957 17 N -0.391 5.391 18 C -0.462 4.462 19 H 0.090 0.910 20 C -0.295 4.295 21 N -0.624 5.624 22 Si 0.952 3.048 23 H -0.223 1.223 24 H -0.204 1.204 25 H -0.201 1.201 26 C -0.060 4.060 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.183 0.817 31 H 0.199 0.801 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.193 0.807 41 H 0.053 0.947 42 H 0.119 0.881 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.946 0.000 -11.472 17.297 hybrid contribution -2.893 0.700 -0.341 2.996 sum -15.839 0.700 -11.813 19.771 Atomic orbital electron populations 1.20654 0.88053 1.03733 1.03012 1.19829 0.98419 0.90735 0.94786 1.20098 0.92321 1.00093 1.06199 1.26318 1.01541 1.05682 1.05835 1.84764 1.01508 0.96181 1.66430 1.24623 0.99133 0.97174 1.23721 1.17297 0.85588 0.83746 0.75837 1.90728 1.15557 1.85623 1.51683 1.47768 1.09321 1.06943 1.69595 1.22007 0.97508 0.79304 1.02055 1.22431 0.99529 0.99072 0.98076 1.22374 0.85632 0.95977 0.97036 1.86378 1.34093 1.33708 1.76767 1.22316 0.96290 0.85422 0.93189 0.94013 1.20788 0.87925 0.97618 0.89357 1.42366 1.10219 1.82236 1.04303 1.20396 0.89447 1.40654 0.95723 0.91003 1.27167 1.09377 1.01490 0.91418 1.70978 1.14146 1.51013 1.26256 0.82648 0.70414 0.76547 0.75237 1.22252 1.20371 1.20124 1.22883 0.80718 1.04542 0.97859 0.90703 0.89166 0.91184 0.81728 0.80054 0.89615 0.89387 0.86552 0.89739 0.94565 0.88213 0.93193 0.94859 0.80715 0.94748 0.88106 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 9.45 71.24 0.67 -1.44 16 2 C -0.02 -0.54 5.91 -20.41 -0.12 -0.66 16 3 C -0.16 -3.50 9.97 21.08 0.21 -3.29 16 4 C -0.26 -6.09 10.92 66.82 0.73 -5.36 16 5 S 0.24 6.50 13.33 -56.49 -0.75 5.74 16 6 C -0.33 -9.31 6.14 24.08 0.15 -9.16 16 7 C 0.59 17.43 7.55 86.42 0.65 18.08 16 8 O -0.55 -18.36 13.75 -4.38 -0.06 -18.42 16 9 N -0.60 -15.56 2.19 -822.76 -1.80 -17.36 16 10 C 0.11 2.33 6.11 86.38 0.53 2.86 16 11 C -0.15 -2.94 5.79 30.31 0.18 -2.77 16 12 C 0.07 1.75 6.38 71.50 0.46 2.21 16 13 O -0.39 -13.38 9.18 -117.87 -1.08 -14.46 16 14 C 0.09 2.90 1.69 31.21 0.05 2.95 16 15 H 0.04 1.51 6.44 -4.42 -0.03 1.49 16 16 C 0.17 6.57 5.66 86.38 0.49 7.06 16 17 N -0.75 -37.66 5.49 -343.45 -1.88 -39.54 16 18 C -0.33 -18.36 9.99 84.03 0.84 -17.52 16 19 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 20 C -0.10 -5.97 5.50 84.86 0.47 -5.51 16 21 N -0.98 -61.54 13.70 21.65 0.30 -61.25 16 22 Si 1.13 51.36 29.92 68.60 2.05 53.41 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 26 C 0.07 1.69 4.38 87.25 0.38 2.07 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.78 6.25 -2.39 -0.01 1.77 16 30 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 31 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.09 1.92 7.08 -2.39 -0.02 1.91 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.64 8.01 -2.39 -0.02 1.62 16 36 H 0.04 1.04 7.40 -2.39 -0.02 1.03 16 37 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.05 1.80 6.15 -2.39 -0.01 1.79 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.36 19.54 6.36 -92.71 -0.59 18.95 16 41 H 0.24 15.41 6.77 -92.71 -0.63 14.78 16 42 H 0.10 2.47 4.45 -20.97 -0.09 2.38 16 43 H 0.12 2.62 8.11 -2.39 -0.02 2.60 16 Total: -1.00 -72.26 344.12 2.94 -69.32 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.49 Total: 33.03 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 5.68 Total: -10.47 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -3.39 Total: -118.15 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.14 Total: -32.88 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.41 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -0.75 Total: 5.74 kcal Total: -72.26 2.94 -69.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199715353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.797 kcal (2) G-P(sol) polarization free energy of solvation -72.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds