Wall clock time and date at job start Tue Mar 31 2020 13:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75878 * 125.20286 * 2 1 4 4 C 1.75890 * 90.97198 * 180.02562 * 3 2 1 5 5 C 1.33395 * 109.58837 * 359.73304 * 4 3 2 6 6 C 1.33387 * 125.20050 * 180.02562 * 2 1 3 7 7 C 1.50700 * 122.54189 * 359.97438 * 6 2 1 8 8 C 1.50691 * 109.47327 * 84.99832 * 7 6 2 9 9 O 1.21284 * 120.00234 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00245 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00120 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47024 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.55191 * 304.87294 * 12 11 10 14 14 C 1.53292 * 109.51261 * 184.74404 * 12 11 10 15 15 N 1.47149 * 108.38309 * 187.77241 * 14 12 11 16 16 C 1.36936 * 120.98027 * 230.55472 * 15 14 12 17 17 H 1.08003 * 120.00094 * 26.25114 * 16 15 14 18 18 C 1.38813 * 120.00112 * 206.24268 * 16 15 14 19 19 N 1.31618 * 119.99995 * 16.90804 * 18 16 15 20 20 Si 1.86800 * 120.00228 * 196.91027 * 18 16 15 21 21 H 1.48505 * 109.47085 * 89.99990 * 20 18 16 22 22 H 1.48496 * 109.47423 * 209.99954 * 20 18 16 23 23 H 1.48505 * 109.47085 * 330.00157 * 20 18 16 24 24 C 1.47151 * 118.03721 * 50.54003 * 15 14 12 25 25 C 1.53303 * 108.37955 * 309.46158 * 24 15 14 26 26 O 1.42959 * 109.22526 * 52.30401 * 25 24 15 27 27 H 1.08999 * 109.47372 * 269.97727 * 1 2 3 28 28 H 1.09009 * 109.46754 * 29.97705 * 1 2 3 29 29 H 1.09004 * 109.46961 * 149.97286 * 1 2 3 30 30 H 1.07991 * 125.20763 * 179.97438 * 4 3 2 31 31 H 1.07997 * 122.53993 * 180.24007 * 5 4 3 32 32 H 1.09001 * 109.47047 * 324.99622 * 7 6 2 33 33 H 1.09000 * 109.47189 * 205.00311 * 7 6 2 34 34 H 0.96999 * 119.99682 * 0.02562 * 10 8 7 35 35 H 1.08989 * 109.46946 * 59.99744 * 11 10 8 36 36 H 1.08999 * 109.46828 * 299.99551 * 11 10 8 37 37 H 1.08996 * 109.68268 * 307.50086 * 14 12 11 38 38 H 1.09001 * 109.67795 * 68.04853 * 14 12 11 39 39 H 0.97002 * 120.00093 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.68271 * 69.18398 * 24 15 14 41 41 H 1.09001 * 109.68366 * 189.70326 * 24 15 14 42 42 H 1.08994 * 109.51178 * 292.37432 * 25 24 15 43 43 H 1.09003 * 109.50630 * 172.22567 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5209 1.4371 0.0000 4 6 3.9752 0.4477 -0.0008 5 6 3.6380 -0.8429 0.0049 6 6 2.2760 -1.0900 -0.0005 7 6 1.7051 -2.4847 -0.0005 8 6 1.3997 -2.9024 -1.4158 9 8 1.6231 -2.1423 -2.3341 10 7 0.8774 -4.1204 -1.6612 11 6 0.5810 -4.5267 -3.0371 12 6 0.0013 -5.9427 -3.0371 13 1 0.6874 -6.6177 -2.5255 14 6 -0.1986 -6.4141 -4.4820 15 7 -0.9261 -7.6930 -4.4564 16 6 -0.4668 -8.7792 -5.1524 17 1 0.5867 -8.8751 -5.3700 18 6 -1.3553 -9.7571 -5.5782 19 7 -2.6458 -9.5015 -5.6179 20 14 -0.7194 -11.4358 -6.0947 21 1 -0.6816 -12.3356 -4.9139 22 1 -1.6199 -12.0104 -7.1262 23 1 0.6490 -11.2961 -6.6545 24 6 -2.1614 -7.7702 -3.6606 25 6 -1.8658 -7.2327 -2.2557 26 8 -1.2595 -5.9425 -2.3633 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8903 -0.5135 29 1 -0.3633 -0.8898 -0.5143 30 1 4.9863 0.8270 -0.0015 31 1 4.3720 -1.6351 0.0093 32 1 0.7887 -2.5022 0.5893 33 1 2.4296 -3.1738 0.4334 34 1 0.6977 -4.7279 -0.9266 35 1 1.4977 -4.5097 -3.6264 36 1 -0.1431 -3.8374 -3.4715 37 1 -0.7778 -5.6732 -5.0331 38 1 0.7709 -6.5527 -4.9604 39 1 -3.2666 -10.1847 -5.9157 40 1 -2.9383 -7.1659 -4.1290 41 1 -2.4920 -8.8069 -3.5956 42 1 -1.1866 -7.9124 -1.7413 43 1 -2.7962 -7.1520 -1.6936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753654236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:32 Heat of formation + Delta-G solvation = -29.304885 kcal Electronic energy + Delta-G solvation = -24816.845450 eV Core-core repulsion = 21182.381310 eV Total energy + Delta-G solvation = -3634.464140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03060 -38.66949 -37.86672 -34.86767 -34.28129 -32.44396 -31.67397 -30.94834 -29.98102 -27.52763 -26.10745 -25.04139 -23.22828 -22.86846 -21.82188 -20.66156 -19.64142 -18.55123 -17.34550 -17.18115 -16.83744 -16.10459 -16.06915 -15.26962 -15.01372 -14.91336 -14.40961 -14.27589 -13.86779 -13.67625 -13.54419 -13.24124 -13.05691 -12.93868 -12.84722 -12.69032 -12.36322 -12.20721 -11.85372 -11.65974 -11.56988 -11.15373 -10.90601 -10.87435 -10.75509 -10.44037 -10.28367 -10.02332 -9.89400 -9.67503 -9.10542 -8.95858 -8.69154 -8.58276 -8.51250 -6.79518 -5.87766 -3.31691 0.85236 1.47542 1.82601 2.46721 2.69724 3.31874 3.36182 3.39699 3.40737 4.20938 4.40087 4.57768 4.66814 4.86801 4.97172 5.11575 5.16938 5.19745 5.29720 5.33120 5.35750 5.44570 5.46774 5.49493 5.76924 5.77439 5.84833 5.89996 6.01077 6.12336 6.20952 6.26145 6.33417 6.35254 6.45264 6.53659 6.72365 7.06691 7.47885 7.57731 7.67453 7.81848 8.28986 8.30156 9.07778 9.70367 10.27120 11.20338 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.034706 B = 0.002160 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.593689 B =12960.137810 C =13317.223033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.158 4.158 3 S 0.088 5.912 4 C -0.218 4.218 5 C -0.116 4.116 6 C -0.092 4.092 7 C -0.082 4.082 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.722 5.722 11 C 0.131 3.869 12 C 0.065 3.935 13 H 0.058 0.942 14 C 0.121 3.879 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.162 0.838 31 H 0.138 0.862 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.403 0.597 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.255 0.745 40 H 0.028 0.972 41 H 0.094 0.906 42 H 0.041 0.959 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 16.417 15.633 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.276 4.276 3 S 0.352 5.648 4 C -0.353 4.353 5 C -0.146 4.146 6 C -0.104 4.104 7 C -0.124 4.124 8 C 0.296 3.704 9 O -0.411 6.411 10 N -0.374 5.374 11 C 0.007 3.993 12 C 0.005 3.995 13 H 0.076 0.924 14 C -0.006 4.006 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.180 0.820 31 H 0.156 0.844 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.237 0.763 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.112 0.888 42 H 0.059 0.941 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.176 18.590 14.934 25.208 hybrid contribution 0.592 -3.012 -0.160 3.074 sum 8.768 15.579 14.774 23.191 Atomic orbital electron populations 1.20354 0.87876 1.03596 1.02429 1.24236 0.99858 0.95168 1.08308 1.84140 0.97178 1.09706 1.73752 1.25417 1.01628 0.96644 1.11656 1.19975 0.95452 0.96552 1.02648 1.18188 0.92850 0.94184 1.05138 1.20355 1.03006 0.93947 0.95127 1.20488 0.77361 0.81479 0.91062 1.90723 1.52185 1.52001 1.46197 1.45974 1.64641 1.16832 1.09959 1.21394 1.00124 0.94997 0.82758 1.22803 0.85897 0.94359 0.96395 0.92377 1.21444 0.97212 0.89589 0.92336 1.44071 1.26283 1.06859 1.54578 1.19209 0.91962 0.97642 1.29692 0.91306 1.25056 0.95564 0.99976 0.99069 1.70033 1.01362 1.33036 1.50244 0.86231 0.78105 0.84139 0.77944 1.21364 1.21652 1.20358 1.21450 0.88264 1.01974 0.86988 1.23322 0.96503 0.83957 1.00020 1.87784 1.34746 1.30646 1.77733 0.90672 0.91173 0.90473 0.82009 0.84440 0.87994 0.88009 0.76333 0.90265 0.90771 0.95238 0.91796 0.93465 0.95371 0.88762 0.94110 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.78 36.01 0.35 -0.41 16 2 C -0.16 -1.70 6.50 -36.00 -0.23 -1.93 16 3 S 0.09 0.86 23.33 -107.50 -2.51 -1.65 16 4 C -0.22 -2.06 11.23 29.04 0.33 -1.74 16 5 C -0.12 -1.18 9.96 -41.21 -0.41 -1.59 16 6 C -0.09 -0.99 4.29 -106.25 -0.46 -1.45 16 7 C -0.08 -0.76 5.34 -29.04 -0.16 -0.92 16 8 C 0.51 6.58 7.57 -10.99 -0.08 6.50 16 9 O -0.53 -9.10 16.03 5.55 0.09 -9.01 16 10 N -0.72 -8.94 5.50 -60.30 -0.33 -9.27 16 11 C 0.13 1.94 5.35 -4.04 -0.02 1.91 16 12 C 0.07 1.11 2.81 -26.58 -0.07 1.03 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.12 2.50 6.02 -3.54 -0.02 2.47 16 15 N -0.59 -14.66 3.05 -171.83 -0.52 -15.18 16 16 C -0.26 -6.87 9.65 -15.06 -0.15 -7.02 16 17 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 18 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 19 N -0.90 -25.73 11.14 55.49 0.62 -25.11 16 20 Si 0.91 21.23 29.59 -169.99 -5.03 16.20 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.14 3.25 5.45 -3.53 -0.02 3.23 16 25 C 0.04 0.74 6.98 37.31 0.26 1.00 16 26 O -0.39 -7.05 10.33 -35.23 -0.36 -7.41 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.08 0.77 7.19 -51.93 -0.37 0.40 16 30 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.10 0.76 7.51 -51.93 -0.39 0.37 16 33 H 0.10 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.40 4.17 8.47 -40.82 -0.35 3.82 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -32.42 367.14 -9.75 -42.17 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.46 Total: 2.66 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.77 Total: 1.08 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.24 Total: -49.57 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.27 Total: -16.42 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.42 -9.75 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753654236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.865 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds