Wall clock time and date at job start Tue Mar 31 2020 13:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75876 * 125.20145 * 2 1 4 4 C 1.75886 * 90.97051 * 179.97438 * 3 2 1 5 5 C 1.33382 * 109.59082 * 359.72736 * 4 3 2 6 6 C 1.33389 * 125.20258 * 179.97438 * 2 1 3 7 7 C 1.50695 * 122.54125 * 0.03462 * 6 2 1 8 8 C 1.50701 * 109.47728 * 84.99321 * 7 6 2 9 9 O 1.21286 * 119.99466 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00258 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99916 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47227 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.51680 * 60.09943 * 12 11 10 14 14 C 1.53716 * 109.44666 * 180.39075 * 12 11 10 15 15 N 1.47153 * 108.16585 * 172.36961 * 14 12 11 16 16 C 1.36936 * 120.97980 * 129.43027 * 15 14 12 17 17 H 1.07998 * 119.99690 * 333.35545 * 16 15 14 18 18 C 1.38809 * 119.99460 * 153.63896 * 16 15 14 19 19 N 1.31616 * 120.00335 * 342.80484 * 18 16 15 20 20 Si 1.86801 * 119.99631 * 162.81047 * 18 16 15 21 21 H 1.48496 * 109.47349 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47105 * 119.99949 * 20 18 16 23 23 H 1.48503 * 109.46951 * 239.99681 * 20 18 16 24 24 C 1.47153 * 118.03369 * 309.15857 * 15 14 12 25 25 C 1.53292 * 108.38450 * 50.78430 * 24 15 14 26 26 O 1.42957 * 109.22418 * 307.69552 * 25 24 15 27 27 H 1.08997 * 109.47457 * 270.02643 * 1 2 3 28 28 H 1.08999 * 109.47133 * 30.03057 * 1 2 3 29 29 H 1.09007 * 109.46752 * 150.02486 * 1 2 3 30 30 H 1.08000 * 125.20242 * 180.02562 * 4 3 2 31 31 H 1.08006 * 122.53975 * 180.24285 * 5 4 3 32 32 H 1.09001 * 109.47056 * 324.99381 * 7 6 2 33 33 H 1.09005 * 109.47218 * 204.99732 * 7 6 2 34 34 H 0.96993 * 120.00133 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.46939 * 60.00157 * 11 10 8 36 36 H 1.09005 * 109.47313 * 300.00521 * 11 10 8 37 37 H 1.09000 * 109.83767 * 52.68854 * 14 12 11 38 38 H 1.08995 * 109.74402 * 292.00143 * 14 12 11 39 39 H 0.97001 * 119.99904 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.68152 * 170.50633 * 24 15 14 41 41 H 1.09000 * 109.68372 * 291.02359 * 24 15 14 42 42 H 1.08998 * 109.51523 * 67.62141 * 25 24 15 43 43 H 1.09000 * 109.51172 * 187.77401 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5209 1.4371 0.0000 4 6 3.9751 0.4477 0.0008 5 6 3.6380 -0.8428 0.0070 6 6 2.2760 -1.0899 0.0005 7 6 1.7052 -2.4846 0.0003 8 6 1.4009 -2.9029 -1.4151 9 8 1.6249 -2.1429 -2.3334 10 7 0.8797 -4.1213 -1.6605 11 6 0.5833 -4.5276 -3.0365 12 6 0.0040 -5.9436 -3.0366 13 1 -0.9138 -5.9616 -2.4488 14 6 -0.2977 -6.3730 -4.4815 15 7 -0.6769 -7.7947 -4.4678 16 6 -1.8187 -8.2257 -5.0890 17 1 -2.6519 -7.5505 -5.2161 18 6 -1.9072 -9.5320 -5.5498 19 7 -0.8155 -10.2508 -5.7042 20 14 -3.5758 -10.2698 -5.9510 21 1 -4.6369 -9.2633 -5.6936 22 1 -3.6091 -10.6704 -7.3805 23 1 -3.8078 -11.4625 -5.0972 24 6 0.2102 -8.7405 -3.7722 25 6 0.4899 -8.1966 -2.3666 26 8 0.9536 -6.8481 -2.4673 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8903 -0.5135 30 1 4.9862 0.8271 0.0015 31 1 4.3721 -1.6350 0.0125 32 1 0.7883 -2.5020 0.5894 33 1 2.4294 -3.1737 0.4351 34 1 0.7002 -4.7289 -0.9261 35 1 1.5000 -4.5096 -3.6261 36 1 -0.1414 -3.8388 -3.4707 37 1 0.5886 -6.2354 -5.1009 38 1 -1.1197 -5.7775 -4.8786 39 1 -0.8774 -11.1639 -6.0259 40 1 -0.2754 -9.7136 -3.6994 41 1 1.1465 -8.8378 -4.3218 42 1 -0.4264 -8.2234 -1.7768 43 1 1.2522 -8.8086 -1.8844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753654237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:35 Heat of formation + Delta-G solvation = -29.269665 kcal Electronic energy + Delta-G solvation = -24810.180587 eV Core-core repulsion = 21175.717975 eV Total energy + Delta-G solvation = -3634.462613 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.02551 -38.66041 -37.86106 -34.86603 -34.26979 -32.45064 -31.66589 -30.94849 -29.97548 -27.53343 -26.10865 -25.04307 -23.22705 -22.86329 -21.81442 -20.63583 -19.65612 -18.55519 -17.34657 -17.18216 -16.82936 -16.24165 -15.83833 -15.44664 -15.01791 -14.76240 -14.43780 -14.29561 -13.87338 -13.67003 -13.58574 -13.24676 -13.04546 -12.96824 -12.79556 -12.71097 -12.36367 -12.21440 -11.86690 -11.65903 -11.55771 -11.16279 -10.91203 -10.87939 -10.73536 -10.44271 -10.28373 -10.02637 -9.89492 -9.66745 -9.10748 -8.94548 -8.69311 -8.58443 -8.51068 -6.79446 -5.88052 -3.31859 0.85182 1.47511 1.82516 2.47269 2.70279 3.30930 3.36590 3.39845 3.41575 4.21223 4.40008 4.57652 4.66902 4.85911 4.98078 5.12135 5.17500 5.18491 5.29587 5.30281 5.36259 5.44321 5.46184 5.49307 5.73774 5.76625 5.84130 5.90610 6.01483 6.12749 6.20919 6.26533 6.33424 6.35586 6.45387 6.54039 6.72336 7.06524 7.47771 7.59062 7.67667 7.81556 8.29178 8.30602 9.07517 9.70258 10.27056 11.19984 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.033435 B = 0.002163 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.236651 B =12940.369472 C =13315.110144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.160 4.160 3 S 0.087 5.913 4 C -0.218 4.218 5 C -0.116 4.116 6 C -0.090 4.090 7 C -0.082 4.082 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.721 5.721 11 C 0.131 3.869 12 C 0.065 3.935 13 H 0.059 0.941 14 C 0.121 3.879 15 N -0.594 5.594 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.138 0.862 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.255 0.745 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.041 0.959 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 17.604 15.812 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.277 4.277 3 S 0.351 5.649 4 C -0.353 4.353 5 C -0.146 4.146 6 C -0.102 4.102 7 C -0.124 4.124 8 C 0.296 3.704 9 O -0.412 6.412 10 N -0.373 5.373 11 C 0.007 3.993 12 C 0.005 3.995 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.318 5.318 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.215 1.215 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.180 0.820 31 H 0.156 0.844 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.237 0.763 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.639 19.616 15.106 25.393 hybrid contribution -0.668 -2.502 -0.118 2.593 sum 4.971 17.114 14.988 23.286 Atomic orbital electron populations 1.20341 0.87945 1.03496 1.02383 1.24219 0.99811 0.95186 1.08524 1.84128 0.97213 1.09702 1.73812 1.25418 1.01621 0.96628 1.11599 1.19989 0.95494 0.96578 1.02551 1.18190 0.92869 0.94176 1.04997 1.20357 1.02991 0.93976 0.95119 1.20488 0.77323 0.81531 0.91062 1.90723 1.51972 1.52258 1.46212 1.45944 1.64930 1.16477 1.09956 1.21408 1.01287 0.93662 0.82920 1.22894 0.91498 0.87634 0.97450 0.92340 1.21531 0.98736 0.88055 0.92260 1.44099 1.25444 1.00862 1.61402 1.19233 0.90791 0.96394 1.32004 0.91288 1.25055 0.97099 0.98687 0.98855 1.70044 1.25914 1.09875 1.48818 0.86184 0.83599 0.79068 0.77695 1.20198 1.21602 1.21471 1.21445 0.94169 0.95064 0.88009 1.23317 0.98226 0.82236 0.99982 1.87775 1.41355 1.19056 1.82742 0.90705 0.91190 0.90583 0.81991 0.84384 0.88096 0.87901 0.76253 0.90842 0.90320 0.95215 0.91784 0.93521 0.88776 0.95380 0.94094 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.78 36.01 0.35 -0.36 16 2 C -0.16 -1.69 6.50 -36.00 -0.23 -1.92 16 3 S 0.09 0.85 23.33 -107.50 -2.51 -1.66 16 4 C -0.22 -2.08 11.23 29.04 0.33 -1.75 16 5 C -0.12 -1.20 9.96 -41.21 -0.41 -1.61 16 6 C -0.09 -0.98 4.29 -106.25 -0.46 -1.43 16 7 C -0.08 -0.77 5.34 -29.04 -0.16 -0.92 16 8 C 0.51 6.60 7.57 -10.99 -0.08 6.52 16 9 O -0.54 -9.12 16.03 5.55 0.09 -9.03 16 10 N -0.72 -8.98 5.45 -60.29 -0.33 -9.31 16 11 C 0.13 1.93 5.37 -4.04 -0.02 1.91 16 12 C 0.07 1.10 2.88 -26.36 -0.08 1.03 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.12 2.49 6.05 -3.31 -0.02 2.47 16 15 N -0.59 -14.65 3.04 -171.58 -0.52 -15.17 16 16 C -0.26 -6.84 9.65 -15.06 -0.15 -6.99 16 17 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 18 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 19 N -0.90 -25.72 11.15 55.49 0.62 -25.10 16 20 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.14 3.25 5.44 -3.53 -0.02 3.23 16 25 C 0.04 0.75 6.98 37.31 0.26 1.01 16 26 O -0.39 -7.03 10.13 -35.23 -0.36 -7.39 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.70 7.19 -51.92 -0.37 0.33 16 30 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.10 0.72 7.51 -51.93 -0.39 0.33 16 33 H 0.10 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.40 4.24 8.35 -40.82 -0.34 3.90 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.09 2.41 6.14 -51.93 -0.32 2.10 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -32.45 366.88 -9.73 -42.18 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.46 Total: 2.66 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.77 Total: 1.14 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.23 Total: -49.59 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.27 Total: -16.42 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.45 -9.73 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753654237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.915 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds