Wall clock time and date at job start Tue Mar 31 2020 13:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46821 * 2 1 4 4 H 1.08996 * 109.46916 * 305.43456 * 3 2 1 5 5 C 1.50694 * 109.46540 * 185.43856 * 3 2 1 6 6 H 1.08003 * 120.00216 * 245.31658 * 5 3 2 7 7 C 1.37881 * 120.00441 * 65.31899 * 5 3 2 8 8 N 1.31518 * 120.00252 * 186.10185 * 7 5 3 9 9 Si 1.86803 * 119.99766 * 6.10058 * 7 5 3 10 10 H 1.48494 * 109.47261 * 270.00242 * 9 7 5 11 11 H 1.48496 * 109.46784 * 30.00339 * 9 7 5 12 12 H 1.48497 * 109.46637 * 150.00198 * 9 7 5 13 13 N 1.46496 * 109.47124 * 65.43891 * 3 2 1 14 14 C 1.34780 * 119.99741 * 274.99573 * 13 3 2 15 15 O 1.21359 * 120.00355 * 0.02562 * 14 13 3 16 16 C 1.49329 * 119.99495 * 179.97438 * 14 13 3 17 17 O 1.21388 * 120.00714 * 0.02562 * 16 14 13 18 18 N 1.34782 * 119.99910 * 179.97438 * 16 14 13 19 19 C 1.39864 * 120.00426 * 184.81848 * 18 16 14 20 20 C 1.38799 * 120.08085 * 332.45606 * 19 18 16 21 21 C 1.38353 * 119.95571 * 179.74000 * 20 19 18 22 22 F 1.35098 * 119.94180 * 180.23168 * 21 20 19 23 23 C 1.38506 * 120.11974 * 0.51755 * 21 20 19 24 24 C 1.38241 * 120.16708 * 359.76100 * 23 21 20 25 25 C 1.38522 * 120.04622 * 359.97438 * 24 23 21 26 26 O 1.36007 * 120.06482 * 179.97438 * 25 24 23 27 27 C 1.42902 * 116.99581 * 0.02740 * 26 25 24 28 28 H 1.09003 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47162 * 299.99958 * 1 2 3 30 30 H 1.09005 * 109.47389 * 60.00098 * 1 2 3 31 31 H 1.09004 * 109.46943 * 240.00074 * 2 1 3 32 32 H 1.08994 * 109.46988 * 120.00251 * 2 1 3 33 33 H 0.97005 * 119.99643 * 354.97565 * 8 7 5 34 34 H 0.97003 * 120.00037 * 94.99591 * 13 3 2 35 35 H 0.96999 * 119.99447 * 4.81834 * 18 16 14 36 36 H 1.08003 * 120.02633 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.90999 * 179.73826 * 23 21 20 38 38 H 1.08001 * 119.97679 * 179.97438 * 24 23 21 39 39 H 1.09000 * 109.47713 * 59.99452 * 27 26 25 40 40 H 1.09002 * 109.46947 * 180.02562 * 27 26 25 41 41 H 1.09004 * 109.47146 * 299.99572 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9836 -0.8373 5 6 3.5409 1.4446 -0.1347 6 1 4.1553 1.8089 0.6754 7 6 4.1299 0.9815 -1.2921 8 7 5.4384 0.8705 -1.3652 9 14 3.0694 0.5116 -2.7564 10 1 2.7041 -0.9246 -2.6625 11 1 1.8352 1.3373 -2.7588 12 1 3.8262 0.7488 -4.0119 13 7 1.6614 2.0943 1.2562 14 6 0.4449 2.6609 1.3815 15 8 -0.3370 2.6308 0.4539 16 6 0.0589 3.3247 2.6622 17 8 0.8408 3.3545 3.5903 18 7 -1.1573 3.8918 2.7874 19 6 -1.4824 4.6006 3.9486 20 6 -0.8712 4.2806 5.1530 21 6 -1.1907 4.9870 6.2989 22 9 -0.5921 4.6784 7.4701 23 6 -2.1275 6.0059 6.2488 24 6 -2.7436 6.3249 5.0531 25 6 -2.4249 5.6259 3.9005 26 8 -3.0312 5.9391 2.7240 27 6 -3.9871 7.0011 2.7494 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9932 1.1823 -0.6331 34 1 2.2863 2.1180 1.9978 35 1 -1.8072 3.8084 2.0722 36 1 -0.1432 3.4839 5.1947 37 1 -2.3775 6.5522 7.1462 38 1 -3.4740 7.1197 5.0176 39 1 -3.5021 7.9187 3.0824 40 1 -4.3944 7.1473 1.7490 41 1 -4.7943 6.7469 3.4364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128299821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:22 Heat of formation + Delta-G solvation = -119.084811 kcal Electronic energy + Delta-G solvation = -27316.542734 eV Core-core repulsion = 23111.972269 eV Total energy + Delta-G solvation = -4204.570466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.98459 -41.23179 -40.03436 -38.61121 -37.31363 -35.74254 -34.87311 -32.49789 -31.56980 -30.62525 -29.87601 -27.66917 -27.45970 -25.11791 -23.07825 -22.49353 -22.23123 -20.57427 -19.74965 -19.17661 -18.36009 -17.96173 -17.40688 -16.82288 -16.53048 -16.25749 -15.80452 -15.66184 -15.58796 -15.02580 -14.99317 -14.53526 -14.25396 -13.85958 -13.40737 -13.30530 -13.21039 -12.85103 -12.76330 -12.52657 -12.37525 -12.33498 -11.89925 -11.74570 -11.33943 -11.16006 -11.00515 -10.80895 -10.72396 -10.55009 -9.89394 -9.77526 -9.26526 -8.96927 -8.94797 -8.61117 -8.33710 -8.10687 -6.61848 -4.30449 0.70325 0.89084 1.68380 2.42178 2.82187 3.20666 3.31402 3.40616 3.53118 3.53674 3.81359 4.11875 4.35564 4.36410 4.50621 4.73310 4.78259 4.80550 4.96572 5.03826 5.13448 5.14073 5.39481 5.57451 5.74373 5.87812 5.90475 5.96253 6.06218 6.09640 6.44885 6.53846 6.62651 6.72230 6.82856 6.88663 6.97615 7.11822 7.20269 7.46539 7.69038 8.13312 8.22913 8.45118 8.73206 9.40668 10.79262 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.003034 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.241837 B = 9226.871296 C =10016.480307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.239 3.761 4 H 0.055 0.945 5 C -0.613 4.613 6 H 0.065 0.935 7 C 0.037 3.963 8 N -0.901 5.901 9 Si 1.048 2.952 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.286 1.286 13 N -0.660 5.660 14 C 0.497 3.503 15 O -0.527 6.527 16 C 0.508 3.492 17 O -0.502 6.502 18 N -0.637 5.637 19 C 0.152 3.848 20 C -0.134 4.134 21 C 0.085 3.915 22 F -0.136 7.136 23 C -0.133 4.133 24 C -0.162 4.162 25 C 0.093 3.907 26 O -0.313 6.313 27 C 0.028 3.972 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.270 0.730 34 H 0.406 0.594 35 H 0.430 0.570 36 H 0.172 0.828 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.777 10.590 11.910 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.137 3.863 4 H 0.072 0.928 5 C -0.651 4.651 6 H 0.083 0.917 7 C -0.169 4.169 8 N -0.534 5.534 9 Si 0.877 3.123 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.309 5.309 14 C 0.275 3.725 15 O -0.406 6.406 16 C 0.291 3.709 17 O -0.376 6.376 18 N -0.283 5.283 19 C 0.056 3.944 20 C -0.155 4.155 21 C 0.065 3.935 22 F -0.115 7.115 23 C -0.153 4.153 24 C -0.181 4.181 25 C 0.045 3.955 26 O -0.226 6.226 27 C -0.067 4.067 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.241 0.759 35 H 0.269 0.731 36 H 0.189 0.811 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.567 9.804 10.127 24.115 hybrid contribution -0.037 0.842 2.050 2.216 sum -19.604 10.647 12.176 25.415 Atomic orbital electron populations 1.21918 0.97098 0.99419 1.01983 1.22280 0.94058 0.99493 1.01890 1.19481 0.96504 0.88764 0.81589 0.92763 1.22155 0.89283 1.49054 1.04649 0.91669 1.25720 0.97518 0.93595 1.00068 1.70824 1.04221 1.42167 1.36186 0.83954 0.75310 0.77207 0.75846 1.20585 1.19809 1.21261 1.46197 1.13394 1.52462 1.18808 1.19559 0.84475 0.81367 0.87058 1.90749 1.50745 1.59209 1.39854 1.20960 0.81302 0.79059 0.89574 1.90683 1.50621 1.56235 1.40106 1.43022 1.15909 1.50895 1.18495 1.16776 0.97675 0.93225 0.86741 1.21452 1.02593 1.02467 0.88991 1.17346 0.96456 0.98038 0.81685 1.91507 1.82270 1.92450 1.45274 1.20910 0.97276 0.98030 0.99037 1.20844 1.03643 1.02394 0.91222 1.18708 0.95976 0.94592 0.86223 1.86087 1.54778 1.53076 1.28668 1.23110 0.90668 0.88613 1.04292 0.94534 0.93473 0.92630 0.91751 0.92319 0.91957 0.75860 0.73148 0.81136 0.84329 0.83972 0.92426 0.87849 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.52 37.16 0.32 -2.45 16 2 C -0.14 -2.95 5.20 -26.73 -0.14 -3.09 16 3 C 0.24 5.54 1.81 -69.09 -0.13 5.42 16 4 H 0.05 1.35 6.06 -51.93 -0.31 1.03 16 5 C -0.61 -16.35 9.09 -34.44 -0.31 -16.67 16 6 H 0.07 1.84 7.95 -52.48 -0.42 1.42 16 7 C 0.04 1.04 5.43 -17.82 -0.10 0.94 16 8 N -0.90 -26.68 13.70 55.43 0.76 -25.92 16 9 Si 1.05 24.65 25.36 -169.99 -4.31 20.33 16 10 H -0.28 -6.19 6.76 56.52 0.38 -5.81 16 11 H -0.27 -6.11 6.36 56.52 0.36 -5.75 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.66 -13.39 5.02 -55.41 -0.28 -13.67 16 14 C 0.50 9.26 6.47 -11.64 -0.08 9.18 16 15 O -0.53 -10.44 13.62 5.49 0.07 -10.37 16 16 C 0.51 8.29 7.77 -11.64 -0.09 8.20 16 17 O -0.50 -8.79 13.47 5.46 0.07 -8.72 16 18 N -0.64 -8.79 5.25 -10.20 -0.05 -8.84 16 19 C 0.15 1.96 6.44 -83.57 -0.54 1.42 16 20 C -0.13 -1.78 8.75 -39.33 -0.34 -2.12 16 21 C 0.08 1.00 7.29 -39.44 -0.29 0.71 16 22 F -0.14 -1.71 17.26 2.25 0.04 -1.67 16 23 C -0.13 -1.21 10.02 -39.48 -0.40 -1.60 16 24 C -0.16 -1.36 9.03 -39.48 -0.36 -1.72 16 25 C 0.09 0.99 6.70 -39.06 -0.26 0.73 16 26 O -0.31 -3.08 9.94 -19.76 -0.20 -3.28 16 27 C 0.03 0.15 9.81 101.05 0.99 1.15 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.87 5.63 -51.93 -0.29 0.58 16 30 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 31 H 0.06 1.42 4.43 -51.93 -0.23 1.19 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.27 7.95 8.72 -40.82 -0.36 7.59 16 34 H 0.41 7.93 8.00 -40.82 -0.33 7.60 16 35 H 0.43 5.47 7.87 -40.82 -0.32 5.15 16 36 H 0.17 2.51 5.64 -52.48 -0.30 2.22 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.14 0.75 6.29 -52.49 -0.33 0.42 16 39 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -30.65 342.47 -5.09 -35.74 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.64 Total: 11.13 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.72 Total: 0.09 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.43 Total: -48.42 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.31 Total: 20.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.65 -5.09 -35.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128299821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.347 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds