Wall clock time and date at job start Tue Mar 31 2020 15:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.88536 * 2 1 4 4 C 1.55152 * 111.00425 * 123.88354 * 2 1 3 5 5 C 1.54330 * 102.94157 * 82.60940 * 4 2 1 6 6 H 1.08999 * 109.87923 * 262.77182 * 5 4 2 7 7 C 1.50704 * 110.00980 * 141.68156 * 5 4 2 8 8 C 1.38673 * 120.41756 * 102.11386 * 7 5 4 9 9 C 1.38629 * 118.42148 * 180.02562 * 8 7 5 10 10 C 1.38228 * 119.15784 * 359.97438 * 9 8 7 11 11 N 1.31848 * 120.76637 * 0.02562 * 10 9 8 12 12 C 1.31888 * 121.72657 * 359.70184 * 11 10 9 13 13 N 1.47014 * 107.27129 * 22.19416 * 5 4 2 14 14 S 1.65601 * 125.64841 * 181.02362 * 13 5 4 15 15 O 1.42096 * 104.27550 * 333.92936 * 14 13 5 16 16 O 1.42097 * 104.27967 * 206.06780 * 14 13 5 17 17 C 1.81409 * 104.44942 * 89.99821 * 14 13 5 18 18 C 1.52999 * 109.46814 * 180.02562 * 17 14 13 19 19 C 1.50706 * 109.46573 * 179.97438 * 18 17 14 20 20 H 1.07995 * 120.00167 * 359.72054 * 19 18 17 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99350 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00608 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47353 * 89.99430 * 23 21 19 25 25 H 1.48494 * 109.47031 * 209.99977 * 23 21 19 26 26 H 1.48504 * 109.46680 * 329.99678 * 23 21 19 27 27 C 1.47429 * 108.70405 * 1.28383 * 13 5 4 28 28 H 1.09000 * 109.47010 * 296.11903 * 1 2 3 29 29 H 1.08994 * 109.46817 * 56.11599 * 1 2 3 30 30 H 1.08994 * 109.47260 * 176.12040 * 1 2 3 31 31 H 1.09004 * 110.72172 * 324.24476 * 4 2 1 32 32 H 1.09004 * 110.71957 * 200.96905 * 4 2 1 33 33 H 1.08005 * 120.79114 * 0.02562 * 8 7 5 34 34 H 1.08001 * 120.41742 * 179.97438 * 9 8 7 35 35 H 1.08008 * 119.61259 * 180.02562 * 10 9 8 36 36 H 1.08002 * 119.62421 * 180.31201 * 12 11 10 37 37 H 1.09000 * 109.47067 * 60.00006 * 17 14 13 38 38 H 1.09001 * 109.46593 * 300.00012 * 17 14 13 39 39 H 1.09000 * 109.47486 * 60.00033 * 18 17 14 40 40 H 1.09001 * 109.47362 * 299.99310 * 18 17 14 41 41 H 0.97005 * 119.99656 * 180.02562 * 22 21 19 42 42 H 1.08997 * 110.36519 * 94.48634 * 27 13 5 43 43 H 1.08996 * 110.36627 * 216.80952 * 27 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8075 1.2024 5 6 2.0294 -2.2643 0.6963 6 1 1.1229 -2.7480 1.0600 7 6 3.2413 -3.0232 1.1723 8 6 3.1461 -3.8966 2.2453 9 6 4.2870 -4.5728 2.6489 10 6 5.4730 -4.3560 1.9728 11 7 5.5265 -3.5178 0.9565 12 6 4.4603 -2.8615 0.5419 13 7 2.0153 -2.2157 -0.7730 14 16 1.9342 -3.5269 -1.7813 15 8 2.4926 -4.5891 -1.0204 16 8 2.5501 -3.0837 -2.9827 17 6 0.1580 -3.7922 -2.0369 18 6 -0.0503 -4.9922 -2.9629 19 6 -1.5260 -5.2129 -3.1747 20 1 -2.2435 -4.5652 -2.6931 21 6 -1.9601 -6.2451 -3.9792 22 7 -3.2478 -6.4380 -4.1637 23 14 -0.7192 -7.3703 -4.8060 24 1 -0.4228 -8.5203 -3.9145 25 1 -1.2800 -7.8689 -6.0874 26 1 0.5317 -6.6160 -5.0734 27 6 2.0916 -0.8067 -1.2001 28 1 -0.3633 0.4524 0.9227 29 1 -0.3633 0.5729 -0.8531 30 1 -0.3633 -1.0252 -0.0695 31 1 1.4520 -0.6790 2.0797 32 1 3.1132 -0.5151 1.4214 33 1 2.2054 -4.0464 2.7544 34 1 4.2495 -5.2603 3.4810 35 1 6.3662 -4.8793 2.2808 36 1 4.5416 -2.1868 -0.2976 37 1 -0.2808 -2.9029 -2.4896 38 1 -0.3221 -3.9861 -1.0777 39 1 0.3883 -5.8812 -2.5098 40 1 0.4298 -4.7986 -3.9221 41 1 -3.5533 -7.1645 -4.7294 42 1 3.1260 -0.5259 -1.3982 43 1 1.4774 -0.6451 -2.0859 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186522191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:47 Heat of formation + Delta-G solvation = -62.724541 kcal Electronic energy + Delta-G solvation = -26330.894306 eV Core-core repulsion = 22694.980981 eV Total energy + Delta-G solvation = -3635.913325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39139 -39.56870 -38.23035 -37.06373 -35.94140 -34.09423 -33.51510 -33.12496 -32.28716 -29.41944 -27.97879 -27.30270 -24.67260 -24.42920 -23.23298 -22.34287 -21.08304 -19.97786 -19.40069 -18.60151 -18.08333 -17.48522 -17.04952 -16.88678 -16.51797 -16.28004 -15.71840 -15.35951 -15.11289 -14.94998 -14.81361 -14.70579 -14.43743 -13.92184 -13.85613 -13.80249 -13.41553 -13.25648 -13.17515 -13.11580 -13.01155 -12.98809 -12.86172 -12.47050 -12.28820 -12.01345 -11.78378 -11.73243 -11.70794 -11.56875 -11.31337 -10.87695 -10.65276 -10.46605 -10.06334 -9.72013 -8.39899 -6.45396 -0.82701 0.21439 0.42066 1.27774 1.30291 1.39891 1.66829 2.25868 2.76557 2.88657 2.93827 3.02089 3.49052 3.57044 3.67755 3.79728 3.87212 3.99685 4.04712 4.10181 4.11525 4.21115 4.44343 4.45993 4.50393 4.64748 4.68393 4.75762 4.87511 4.91419 4.96198 4.99092 5.01923 5.06633 5.16681 5.21328 5.25840 5.28139 5.39776 5.43399 5.49329 5.59229 5.84427 6.13491 6.60147 7.07017 7.19069 8.75587 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.004454 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.674721 B = 6284.537884 C = 7336.561216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.114 0.886 4 C -0.103 4.103 5 C 0.190 3.810 6 H 0.100 0.900 7 C -0.142 4.142 8 C -0.071 4.071 9 C -0.167 4.167 10 C 0.075 3.925 11 N -0.518 5.518 12 C 0.091 3.909 13 N -1.004 6.004 14 S 2.621 3.379 15 O -0.975 6.975 16 O -0.990 6.990 17 C -0.586 4.586 18 C -0.015 4.015 19 C -0.526 4.526 20 H 0.052 0.948 21 C 0.018 3.982 22 N -0.937 5.937 23 Si 0.920 3.080 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.254 1.254 27 C 0.110 3.890 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.175 0.825 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.271 0.729 42 H 0.075 0.925 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.163 13.611 16.707 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.132 0.868 4 C -0.142 4.142 5 C 0.083 3.917 6 H 0.118 0.882 7 C -0.146 4.146 8 C -0.097 4.097 9 C -0.187 4.187 10 C -0.081 4.081 11 N -0.227 5.227 12 C -0.066 4.066 13 N -0.842 5.842 14 S 2.720 3.280 15 O -0.966 6.966 16 O -0.980 6.980 17 C -0.717 4.717 18 C -0.054 4.054 19 C -0.565 4.565 20 H 0.070 0.930 21 C -0.181 4.181 22 N -0.576 5.576 23 Si 0.743 3.257 24 H -0.185 1.185 25 H -0.196 1.196 26 H -0.178 1.178 27 C -0.015 4.015 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.192 0.808 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.595 13.095 15.766 24.594 hybrid contribution -1.264 -0.948 -0.430 1.637 sum 12.331 12.147 15.336 23.126 Atomic orbital electron populations 1.21832 0.93911 1.02045 1.02962 1.22394 0.96350 0.99660 0.92484 0.86751 1.22778 1.03052 0.89532 0.98857 1.20428 0.94566 0.98508 0.78174 0.88237 1.21275 0.96620 0.99119 0.97567 1.21813 1.00232 0.92755 0.94909 1.22460 0.93221 1.00875 1.02132 1.23215 0.99302 0.94485 0.91117 1.67601 1.32522 1.08198 1.14350 1.22477 0.88650 0.97170 0.98306 1.58573 1.89322 1.20134 1.16169 1.04510 0.78017 0.72747 0.72739 1.93540 1.76574 1.55672 1.70773 1.93509 1.74922 1.81358 1.48245 1.30328 1.23647 1.07929 1.09839 1.19345 0.98202 0.93025 0.94837 1.21133 0.90746 1.14916 1.29691 0.92960 1.25801 0.96891 0.98757 0.96639 1.69994 1.15278 1.32617 1.39752 0.86104 0.80267 0.80121 0.79252 1.18470 1.19571 1.17832 1.22445 1.01865 0.78293 0.98855 0.90630 0.92145 0.93369 0.87303 0.90083 0.82143 0.81695 0.80811 0.84258 0.84431 0.84168 0.95374 0.95480 0.92025 0.90720 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.22 71.98 0.66 -1.21 16 2 C -0.09 -1.06 3.71 -9.33 -0.03 -1.09 16 3 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.10 -1.24 5.96 31.78 0.19 -1.05 16 5 C 0.19 3.63 2.95 44.60 0.13 3.76 16 6 H 0.10 1.64 8.04 -2.39 -0.02 1.62 16 7 C -0.14 -3.34 3.30 -19.77 -0.07 -3.41 16 8 C -0.07 -1.44 9.83 22.47 0.22 -1.22 16 9 C -0.17 -3.24 10.11 22.36 0.23 -3.02 16 10 C 0.08 1.75 11.18 84.69 0.95 2.69 16 11 N -0.52 -15.23 10.36 -195.84 -2.03 -17.25 16 12 C 0.09 2.55 9.97 84.67 0.84 3.39 16 13 N -1.00 -24.14 2.60 -487.72 -1.27 -25.41 16 14 S 2.62 90.11 5.62 -56.49 -0.32 89.79 16 15 O -0.98 -38.10 15.80 -127.65 -2.02 -40.12 16 16 O -0.99 -39.82 17.60 -127.65 -2.25 -42.07 16 17 C -0.59 -21.32 6.12 71.98 0.44 -20.88 16 18 C -0.01 -0.72 4.05 29.85 0.12 -0.59 16 19 C -0.53 -29.77 9.66 25.60 0.25 -29.52 16 20 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 21 C 0.02 1.05 5.47 84.66 0.46 1.51 16 22 N -0.94 -57.38 13.96 21.45 0.30 -57.08 16 23 Si 0.92 44.27 27.47 68.60 1.88 46.15 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 27 C 0.11 2.04 6.37 86.93 0.55 2.59 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.74 7.91 -2.39 -0.02 0.73 16 31 H 0.11 0.84 8.05 -2.38 -0.02 0.82 16 32 H 0.08 0.97 7.79 -2.39 -0.02 0.96 16 33 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.14 3.86 7.73 -2.91 -0.02 3.84 16 37 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 38 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 39 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 40 H 0.03 1.30 7.20 -2.39 -0.02 1.29 16 41 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 Total: -1.00 -78.86 363.74 0.19 -78.68 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.93 Total: 15.33 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 4.95 Total: -48.04 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.00 Total: -99.74 kcal Atomic # 8 Polarization: -77.92 SS G_CDS: -4.26 Total: -82.18 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Atomic # 16 Polarization: 90.11 SS G_CDS: -0.32 Total: 89.79 kcal Total: -78.86 0.19 -78.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186522191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.955 kcal (2) G-P(sol) polarization free energy of solvation -78.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds