Wall clock time and date at job start Tue Mar 31 2020 15:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.58883 * 2 1 4 4 C 1.53196 * 109.58327 * 120.42274 * 2 1 3 5 5 C 1.53044 * 109.31318 * 65.15337 * 4 2 1 6 6 H 1.08997 * 109.46051 * 301.34387 * 5 4 2 7 7 N 1.46902 * 109.45895 * 181.38364 * 5 4 2 8 8 C 1.53040 * 109.53688 * 61.36781 * 5 4 2 9 9 C 1.53195 * 109.30978 * 298.63301 * 8 5 4 10 10 N 1.46919 * 108.77557 * 54.63906 * 9 8 5 11 11 S 1.65599 * 120.63122 * 126.37112 * 10 9 8 12 12 O 1.42102 * 106.40430 * 29.39268 * 11 10 9 13 13 O 1.42104 * 106.40311 * 162.31613 * 11 10 9 14 14 C 1.76201 * 107.21575 * 275.85177 * 11 10 9 15 15 C 1.37641 * 120.12733 * 114.16876 * 14 11 10 16 16 C 1.38612 * 120.25218 * 180.02562 * 15 14 11 17 17 C 1.38662 * 120.49700 * 359.97438 * 16 15 14 18 18 C 1.37599 * 120.24830 * 0.02562 * 17 16 15 19 19 C 1.40696 * 120.13004 * 293.88807 * 14 11 10 20 20 C 1.41393 * 120.24188 * 0.02562 * 19 14 11 21 21 H 1.07999 * 120.00040 * 332.66370 * 20 19 14 22 22 C 1.39953 * 120.00049 * 152.66920 * 20 19 14 23 23 N 1.30814 * 119.99803 * 345.85690 * 22 20 19 24 24 Si 1.86800 * 119.99809 * 165.85916 * 22 20 19 25 25 H 1.48496 * 109.47334 * 60.00038 * 24 22 20 26 26 H 1.48499 * 109.47048 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47193 * 299.99659 * 24 22 20 28 28 H 1.09003 * 109.47521 * 180.28243 * 1 2 3 29 29 H 1.08997 * 109.47340 * 300.28778 * 1 2 3 30 30 H 1.08999 * 109.47241 * 60.29155 * 1 2 3 31 31 H 1.09002 * 109.50060 * 185.10453 * 4 2 1 32 32 H 1.09001 * 109.50000 * 305.20195 * 4 2 1 33 33 H 1.00893 * 111.00070 * 179.97438 * 7 5 4 34 34 H 1.00900 * 111.00447 * 303.88646 * 7 5 4 35 35 H 1.09001 * 109.49473 * 178.68290 * 8 5 4 36 36 H 1.08997 * 109.49968 * 58.58268 * 8 5 4 37 37 H 1.08997 * 109.58678 * 294.84595 * 9 8 5 38 38 H 1.08999 * 109.58159 * 174.42745 * 9 8 5 39 39 H 1.08003 * 119.87325 * 0.02562 * 15 14 11 40 40 H 1.07993 * 119.75019 * 180.02562 * 16 15 14 41 41 H 1.07997 * 119.87567 * 180.02562 * 17 16 15 42 42 H 1.08005 * 120.12267 * 179.97438 * 18 17 16 43 43 H 0.97007 * 120.00042 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 1.2446 5 6 1.6413 -2.2055 1.1676 6 1 0.5564 -2.2828 1.0966 7 7 2.1034 -2.9025 2.3753 8 6 2.2800 -2.8464 -0.0667 9 6 1.7692 -2.1395 -1.3262 10 7 2.0226 -0.6982 -1.1952 11 16 2.8481 0.1237 -2.3722 12 8 2.5842 -0.5523 -3.5940 13 8 2.5683 1.5022 -2.1704 14 6 4.5671 -0.0877 -2.0478 15 6 5.3551 -0.7920 -2.9297 16 6 6.7075 -0.9603 -2.6768 17 6 7.2823 -0.4222 -1.5354 18 6 6.5138 0.2855 -0.6400 19 6 5.1408 0.4677 -0.8894 20 6 4.3422 1.1977 0.0209 21 1 3.4566 1.7086 -0.3269 22 6 4.6996 1.2584 1.3727 23 7 5.5945 0.4324 1.8503 24 14 3.8987 2.5188 2.4948 25 1 2.4308 2.2959 2.5215 26 1 4.4454 2.3770 3.8682 27 1 4.1828 3.8851 1.9870 28 1 -0.3634 -1.0277 0.0051 29 1 -0.3634 0.5183 0.8874 30 1 -0.3634 0.5093 -0.8926 31 1 3.1296 -0.6519 1.2907 32 1 1.6073 -0.2810 2.1366 33 1 1.8496 -3.8787 2.3489 34 1 3.0987 -2.7915 2.4985 35 1 2.0122 -3.9022 -0.1081 36 1 3.3639 -2.7474 -0.0083 37 1 0.6987 -2.3140 -1.4344 38 1 2.2945 -2.5250 -2.2000 39 1 4.9179 -1.2150 -3.8221 40 1 7.3182 -1.5139 -3.3745 41 1 8.3371 -0.5591 -1.3486 42 1 6.9635 0.7034 0.2486 43 1 5.8420 0.4741 2.7873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601343407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:52 Heat of formation + Delta-G solvation = -61.930100 kcal Electronic energy + Delta-G solvation = -28088.704625 eV Core-core repulsion = 24452.825750 eV Total energy + Delta-G solvation = -3635.878875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.81496 -37.60095 -36.39236 -34.90813 -34.18272 -33.95017 -31.74043 -30.26912 -29.58166 -28.93100 -26.89283 -25.56824 -22.91744 -22.02502 -21.67080 -21.15431 -19.51428 -17.97547 -17.62411 -17.22408 -16.06204 -15.62963 -15.44107 -15.15918 -14.45934 -14.36726 -14.14002 -13.72682 -13.58299 -13.33999 -13.18043 -12.84459 -12.78397 -12.60173 -12.02890 -11.94529 -11.83399 -11.60416 -11.29839 -11.26988 -11.22942 -11.16434 -10.93847 -10.90357 -10.62510 -10.60599 -10.46184 -10.38864 -9.94297 -9.70925 -9.39549 -9.20000 -8.54901 -8.29464 -8.03006 -7.64478 -7.11142 -4.81054 1.48609 2.32363 2.70415 2.93981 2.97612 3.09262 3.72220 3.83106 4.33614 4.69583 4.81643 5.07848 5.11302 5.27819 5.34869 5.48153 5.50099 5.62350 5.72741 5.78843 5.91672 5.93530 6.02305 6.07945 6.20145 6.22947 6.24679 6.35272 6.41316 6.46239 6.56009 6.69862 6.85715 6.94343 7.00759 7.05151 7.29056 7.32462 7.39266 7.49602 7.65869 7.67387 7.78545 7.91278 8.31229 8.46605 8.62746 9.80866 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.009192 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.238929 B = 3045.436479 C = 4099.112083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.111 0.889 4 C -0.128 4.128 5 C 0.096 3.904 6 H 0.075 0.925 7 N -0.846 5.846 8 C -0.167 4.167 9 C 0.134 3.866 10 N -0.987 5.987 11 S 2.702 3.298 12 O -0.997 6.997 13 O -0.974 6.974 14 C -0.778 4.778 15 C -0.003 4.003 16 C -0.250 4.250 17 C -0.077 4.077 18 C -0.159 4.159 19 C 0.193 3.807 20 C -0.471 4.471 21 H 0.114 0.886 22 C 0.087 3.913 23 N -0.773 5.773 24 Si 0.897 3.103 25 H -0.252 1.252 26 H -0.274 1.274 27 H -0.258 1.258 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.332 0.668 34 H 0.343 0.657 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.124 0.876 43 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -4.654 2.367 7.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.129 0.871 4 C -0.167 4.167 5 C -0.016 4.016 6 H 0.093 0.907 7 N -0.374 5.374 8 C -0.208 4.208 9 C 0.007 3.993 10 N -0.822 5.822 11 S 2.802 3.198 12 O -0.988 6.988 13 O -0.964 6.964 14 C -0.873 4.873 15 C -0.023 4.023 16 C -0.271 4.271 17 C -0.096 4.096 18 C -0.179 4.179 19 C 0.188 3.812 20 C -0.499 4.499 21 H 0.132 0.868 22 C -0.135 4.135 23 N -0.395 5.395 24 Si 0.720 3.280 25 H -0.176 1.176 26 H -0.199 1.199 27 H -0.182 1.182 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.142 0.858 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.149 -3.752 2.312 7.566 hybrid contribution 1.202 -0.527 0.300 1.346 sum -4.948 -4.279 2.612 7.044 Atomic orbital electron populations 1.22211 0.96335 1.01805 1.01832 1.21024 0.92873 0.97536 0.83971 0.87087 1.22037 1.04590 0.93284 0.96770 1.21402 0.98793 0.94517 0.86840 0.90700 1.59003 1.21372 1.17066 1.39936 1.22754 1.02412 0.98704 0.96886 1.21107 1.00338 0.80056 0.97762 1.57730 1.71003 1.17051 1.36451 1.01046 0.74313 0.72838 0.71647 1.93434 1.85998 1.76143 1.43221 1.93463 1.85490 1.31902 1.85567 1.29861 1.21865 1.24104 1.11446 1.20228 0.93828 0.92753 0.95488 1.20476 0.95199 1.10900 1.00514 1.20895 0.97720 0.96707 0.94310 1.21519 0.93928 1.02712 0.99742 1.16958 0.91789 0.84933 0.87503 1.20473 1.10713 1.26464 0.92258 0.86841 1.25923 0.93815 0.94618 0.99119 1.69789 1.24049 1.29374 1.16338 0.86494 0.81277 0.81785 0.78433 1.17559 1.19907 1.18234 0.92454 0.91882 0.92620 0.88198 0.91489 0.85608 0.84469 0.92045 0.90772 0.91906 0.90038 0.87645 0.88863 0.88963 0.85810 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.03 37.15 0.34 -2.01 16 2 C 0.15 2.65 2.24 -67.60 -0.15 2.50 16 3 H 0.11 2.17 4.77 -51.93 -0.25 1.92 16 4 C -0.13 -2.14 4.93 -26.61 -0.13 -2.27 16 5 C 0.10 1.36 3.00 -67.67 -0.20 1.16 16 6 H 0.07 1.01 6.49 -51.93 -0.34 0.67 16 7 N -0.85 -11.19 9.25 -4.63 -0.04 -11.24 16 8 C -0.17 -2.39 5.65 -26.61 -0.15 -2.54 16 9 C 0.13 2.08 5.94 -3.71 -0.02 2.06 16 10 N -0.99 -18.02 2.98 -106.48 -0.32 -18.34 16 11 S 2.70 58.94 5.09 -107.50 -0.55 58.39 16 12 O -1.00 -22.68 15.89 -57.17 -0.91 -23.59 16 13 O -0.97 -23.21 14.48 -57.17 -0.83 -24.04 16 14 C -0.78 -18.21 5.97 -38.87 -0.23 -18.45 16 15 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 16 C -0.25 -5.42 10.05 -39.29 -0.39 -5.82 16 17 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 18 C -0.16 -3.81 8.67 -38.87 -0.34 -4.14 16 19 C 0.19 4.70 5.56 -106.83 -0.59 4.10 16 20 C -0.47 -11.04 5.85 -37.74 -0.22 -11.26 16 21 H 0.11 2.70 3.61 -52.49 -0.19 2.51 16 22 C 0.09 1.89 3.79 -17.34 -0.07 1.83 16 23 N -0.77 -16.92 10.91 55.55 0.61 -16.31 16 24 Si 0.90 16.97 29.58 -169.99 -5.03 11.94 16 25 H -0.25 -4.57 7.11 56.52 0.40 -4.16 16 26 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 27 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 28 H 0.06 0.74 5.72 -51.93 -0.30 0.44 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 1.94 5.60 -51.93 -0.29 1.64 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.33 3.66 9.04 -39.30 -0.36 3.30 16 34 H 0.34 4.79 8.98 -39.29 -0.35 4.44 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.84 7.50 -51.93 -0.39 0.45 16 38 H 0.08 1.29 7.30 -51.93 -0.38 0.91 16 39 H 0.11 2.21 7.32 -52.48 -0.38 1.83 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.12 2.98 6.22 -52.48 -0.33 2.65 16 43 H 0.29 5.80 8.30 -40.82 -0.34 5.46 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -26.81 337.40 -10.57 -37.38 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -5.64 Total: 18.10 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: -2.94 Total: -37.38 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.25 Total: -45.88 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -1.74 Total: -47.63 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Atomic # 16 Polarization: 58.94 SS G_CDS: -0.55 Total: 58.39 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.81 -10.57 -37.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601343407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.554 kcal (2) G-P(sol) polarization free energy of solvation -26.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds