Wall clock time and date at job start Tue Mar 31 2020 15:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.58883 * 2 1 4 4 C 1.53196 * 109.58327 * 120.42274 * 2 1 3 5 5 C 1.53044 * 109.31318 * 65.15337 * 4 2 1 6 6 H 1.08997 * 109.46051 * 301.34387 * 5 4 2 7 7 N 1.46902 * 109.45895 * 181.38364 * 5 4 2 8 8 C 1.53040 * 109.53688 * 61.36781 * 5 4 2 9 9 C 1.53195 * 109.30978 * 298.63301 * 8 5 4 10 10 N 1.46919 * 108.77557 * 54.63906 * 9 8 5 11 11 S 1.65599 * 120.63122 * 126.37112 * 10 9 8 12 12 O 1.42102 * 106.40430 * 29.39268 * 11 10 9 13 13 O 1.42104 * 106.40311 * 162.31613 * 11 10 9 14 14 C 1.76201 * 107.21575 * 275.85177 * 11 10 9 15 15 C 1.37641 * 120.12733 * 114.16876 * 14 11 10 16 16 C 1.38612 * 120.25218 * 180.02562 * 15 14 11 17 17 C 1.38662 * 120.49700 * 359.97438 * 16 15 14 18 18 C 1.37599 * 120.24830 * 0.02562 * 17 16 15 19 19 C 1.40696 * 120.13004 * 293.88807 * 14 11 10 20 20 C 1.41393 * 120.24188 * 0.02562 * 19 14 11 21 21 H 1.07999 * 120.00040 * 332.66370 * 20 19 14 22 22 C 1.39953 * 120.00049 * 152.66920 * 20 19 14 23 23 N 1.30814 * 119.99803 * 345.85690 * 22 20 19 24 24 Si 1.86800 * 119.99809 * 165.85916 * 22 20 19 25 25 H 1.48496 * 109.47334 * 60.00038 * 24 22 20 26 26 H 1.48499 * 109.47048 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47193 * 299.99659 * 24 22 20 28 28 H 1.09003 * 109.47521 * 180.28243 * 1 2 3 29 29 H 1.08997 * 109.47340 * 300.28778 * 1 2 3 30 30 H 1.08999 * 109.47241 * 60.29155 * 1 2 3 31 31 H 1.09002 * 109.50060 * 185.10453 * 4 2 1 32 32 H 1.09001 * 109.50000 * 305.20195 * 4 2 1 33 33 H 1.00893 * 111.00070 * 179.97438 * 7 5 4 34 34 H 1.00900 * 111.00447 * 303.88646 * 7 5 4 35 35 H 1.09001 * 109.49473 * 178.68290 * 8 5 4 36 36 H 1.08997 * 109.49968 * 58.58268 * 8 5 4 37 37 H 1.08997 * 109.58678 * 294.84595 * 9 8 5 38 38 H 1.08999 * 109.58159 * 174.42745 * 9 8 5 39 39 H 1.08003 * 119.87325 * 0.02562 * 15 14 11 40 40 H 1.07993 * 119.75019 * 180.02562 * 16 15 14 41 41 H 1.07997 * 119.87567 * 180.02562 * 17 16 15 42 42 H 1.08005 * 120.12267 * 179.97438 * 18 17 16 43 43 H 0.97007 * 120.00042 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 1.2446 5 6 1.6413 -2.2055 1.1676 6 1 0.5564 -2.2828 1.0966 7 7 2.1034 -2.9025 2.3753 8 6 2.2800 -2.8464 -0.0667 9 6 1.7692 -2.1395 -1.3262 10 7 2.0226 -0.6982 -1.1952 11 16 2.8481 0.1237 -2.3722 12 8 2.5842 -0.5523 -3.5940 13 8 2.5683 1.5022 -2.1704 14 6 4.5671 -0.0877 -2.0478 15 6 5.3551 -0.7920 -2.9297 16 6 6.7075 -0.9603 -2.6768 17 6 7.2823 -0.4222 -1.5354 18 6 6.5138 0.2855 -0.6400 19 6 5.1408 0.4677 -0.8894 20 6 4.3422 1.1977 0.0209 21 1 3.4566 1.7086 -0.3269 22 6 4.6996 1.2584 1.3727 23 7 5.5945 0.4324 1.8503 24 14 3.8987 2.5188 2.4948 25 1 2.4308 2.2959 2.5215 26 1 4.4454 2.3770 3.8682 27 1 4.1828 3.8851 1.9870 28 1 -0.3634 -1.0277 0.0051 29 1 -0.3634 0.5183 0.8874 30 1 -0.3634 0.5093 -0.8926 31 1 3.1296 -0.6519 1.2907 32 1 1.6073 -0.2810 2.1366 33 1 1.8496 -3.8787 2.3489 34 1 3.0987 -2.7915 2.4985 35 1 2.0122 -3.9022 -0.1081 36 1 3.3639 -2.7474 -0.0083 37 1 0.6987 -2.3140 -1.4344 38 1 2.2945 -2.5250 -2.2000 39 1 4.9179 -1.2150 -3.8221 40 1 7.3182 -1.5139 -3.3745 41 1 8.3371 -0.5591 -1.3486 42 1 6.9635 0.7034 0.2486 43 1 5.8420 0.4741 2.7873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601343407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:51 Heat of formation + Delta-G solvation = -79.867989 kcal Electronic energy + Delta-G solvation = -28089.482470 eV Core-core repulsion = 24452.825750 eV Total energy + Delta-G solvation = -3636.656721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.10389 -39.32104 -38.15774 -36.69222 -35.70452 -35.35006 -33.01206 -32.00450 -31.33048 -30.16487 -28.10587 -27.29018 -24.18507 -23.41277 -23.25912 -22.88859 -20.91371 -19.59664 -19.22952 -18.79946 -17.72767 -17.12963 -16.89971 -16.58358 -16.07237 -15.67045 -15.60583 -15.14583 -15.00761 -14.90207 -14.72112 -14.44361 -14.14569 -13.83622 -13.68678 -13.42574 -13.24392 -13.02193 -12.98066 -12.90128 -12.88845 -12.77703 -12.43867 -12.32326 -12.13753 -12.04885 -11.80338 -11.78928 -11.64047 -11.10069 -11.02319 -10.84201 -9.92218 -9.73452 -9.45599 -9.41673 -8.78370 -6.57032 -0.17625 0.56620 0.99382 1.38576 1.45717 1.51099 2.15291 2.27158 2.63484 3.02165 3.51014 3.60461 3.71217 3.87672 4.02989 4.16485 4.24960 4.31802 4.40575 4.48485 4.52075 4.60820 4.69675 4.72425 4.78604 4.86159 4.96186 5.01710 5.08503 5.13151 5.20432 5.29476 5.32141 5.35869 5.51166 5.56964 5.70670 5.72767 5.85995 5.96007 6.02422 6.16593 6.30321 6.54353 6.69038 6.72909 6.86463 8.15955 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.009192 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.238929 B = 3045.436479 C = 4099.112083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.084 0.916 4 C -0.124 4.124 5 C 0.103 3.897 6 H 0.095 0.905 7 N -0.846 5.846 8 C -0.158 4.158 9 C 0.124 3.876 10 N -0.982 5.982 11 S 2.714 3.286 12 O -1.010 7.010 13 O -1.000 7.000 14 C -0.798 4.798 15 C -0.017 4.017 16 C -0.255 4.255 17 C -0.078 4.078 18 C -0.186 4.186 19 C 0.170 3.830 20 C -0.484 4.484 21 H 0.105 0.895 22 C 0.069 3.931 23 N -0.785 5.785 24 Si 0.937 3.063 25 H -0.239 1.239 26 H -0.261 1.261 27 H -0.268 1.268 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.348 0.652 34 H 0.337 0.663 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.673 -5.965 3.274 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.102 0.898 4 C -0.164 4.164 5 C -0.009 4.009 6 H 0.112 0.888 7 N -0.374 5.374 8 C -0.199 4.199 9 C -0.001 4.001 10 N -0.819 5.819 11 S 2.813 3.187 12 O -1.001 7.001 13 O -0.991 6.991 14 C -0.892 4.892 15 C -0.037 4.037 16 C -0.276 4.276 17 C -0.097 4.097 18 C -0.205 4.205 19 C 0.165 3.835 20 C -0.511 4.511 21 H 0.123 0.877 22 C -0.153 4.153 23 N -0.408 5.408 24 Si 0.758 3.242 25 H -0.162 1.162 26 H -0.185 1.185 27 H -0.193 1.193 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.462 -5.088 3.214 9.586 hybrid contribution 1.644 -0.163 0.019 1.652 sum -5.818 -5.252 3.233 8.478 Atomic orbital electron populations 1.22191 0.93577 1.03428 1.02540 1.21117 0.94953 0.96206 0.83712 0.89769 1.21947 1.02689 0.95282 0.96438 1.21333 0.99690 0.92808 0.87040 0.88757 1.58975 1.20959 1.18238 1.39227 1.22694 1.00411 1.00418 0.96374 1.21425 1.02240 0.78263 0.98195 1.57487 1.70149 1.18261 1.36031 1.00533 0.73889 0.72382 0.71943 1.93403 1.86039 1.76253 1.44388 1.93418 1.85693 1.33889 1.86097 1.30168 1.23204 1.24317 1.11513 1.20515 0.94503 0.92851 0.95792 1.20823 0.95209 1.10689 1.00832 1.21205 0.98962 0.95658 0.93877 1.21575 0.94254 1.04333 1.00374 1.17225 0.92307 0.85689 0.88273 1.20497 1.10644 1.26849 0.93086 0.87715 1.26359 0.94009 0.95498 0.99385 1.69796 1.24237 1.29770 1.17005 0.85890 0.81480 0.79311 0.77544 1.16241 1.18491 1.19256 0.90323 0.90267 0.92896 0.91139 0.91200 0.83902 0.85116 0.88939 0.93840 0.88773 0.90702 0.86603 0.85984 0.86338 0.86697 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 9.03 71.98 0.65 -3.53 16 2 C 0.15 4.97 2.24 44.97 0.10 5.07 16 3 H 0.08 3.34 4.77 -2.39 -0.01 3.33 16 4 C -0.12 -4.03 4.93 30.67 0.15 -3.88 16 5 C 0.10 2.67 3.00 44.94 0.13 2.81 16 6 H 0.09 2.14 6.49 -2.39 -0.02 2.12 16 7 N -0.85 -20.39 9.25 -168.56 -1.56 -21.95 16 8 C -0.16 -4.22 5.65 30.67 0.17 -4.04 16 9 C 0.12 3.64 5.94 86.36 0.51 4.15 16 10 N -0.98 -35.34 2.98 -490.80 -1.46 -36.80 16 11 S 2.71 120.19 5.09 -56.49 -0.29 119.90 16 12 O -1.01 -46.11 15.89 -128.00 -2.03 -48.15 16 13 O -1.00 -49.06 14.48 -128.00 -1.85 -50.92 16 14 C -0.80 -38.23 5.97 22.73 0.14 -38.09 16 15 C -0.02 -0.76 9.53 22.22 0.21 -0.55 16 16 C -0.26 -10.89 10.05 22.46 0.23 -10.66 16 17 C -0.08 -3.43 10.02 22.22 0.22 -3.21 16 18 C -0.19 -9.06 8.67 22.73 0.20 -8.87 16 19 C 0.17 8.50 5.56 -21.29 -0.12 8.38 16 20 C -0.48 -23.28 5.85 23.46 0.14 -23.14 16 21 H 0.11 5.18 3.61 -2.91 -0.01 5.16 16 22 C 0.07 3.01 3.79 85.26 0.32 3.34 16 23 N -0.79 -34.80 10.91 21.83 0.24 -34.57 16 24 Si 0.94 34.44 29.58 68.60 2.03 36.47 16 25 H -0.24 -8.24 7.11 99.48 0.71 -7.54 16 26 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 27 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 28 H 0.08 1.72 5.72 -2.39 -0.01 1.70 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 2.74 5.60 -2.39 -0.01 2.73 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.35 6.60 9.04 -89.70 -0.81 5.79 16 34 H 0.34 9.00 8.98 -89.69 -0.81 8.20 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 2.19 7.50 -2.39 -0.02 2.18 16 38 H 0.07 2.29 7.30 -2.39 -0.02 2.28 16 39 H 0.12 4.87 7.32 -2.91 -0.02 4.85 16 40 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 41 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 42 H 0.12 5.69 6.22 -2.91 -0.02 5.67 16 43 H 0.30 11.91 8.30 -92.70 -0.77 11.14 16 Total: -1.00 -58.53 337.40 -2.42 -60.95 By element: Atomic # 1 Polarization: 47.84 SS G_CDS: -0.55 Total: 47.29 kcal Atomic # 6 Polarization: -75.28 SS G_CDS: 3.06 Total: -72.22 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -2.79 Total: -93.32 kcal Atomic # 8 Polarization: -95.18 SS G_CDS: -3.89 Total: -99.06 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Atomic # 16 Polarization: 120.19 SS G_CDS: -0.29 Total: 119.90 kcal Total: -58.53 -2.42 -60.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601343407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.921 kcal (2) G-P(sol) polarization free energy of solvation -58.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds