Wall clock time and date at job start Tue Mar 31 2020 13:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 H 1.08999 * 109.47144 * 306.15997 * 3 2 1 5 5 C 1.50695 * 109.46940 * 186.16177 * 3 2 1 6 6 H 1.08003 * 120.00698 * 245.67639 * 5 3 2 7 7 C 1.37885 * 119.99924 * 65.67904 * 5 3 2 8 8 N 1.31516 * 119.99886 * 196.62402 * 7 5 3 9 9 Si 1.86793 * 120.00021 * 16.63007 * 7 5 3 10 10 H 1.48501 * 109.47399 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46909 * 299.99746 * 9 7 5 12 12 H 1.48496 * 109.47508 * 59.99709 * 9 7 5 13 13 N 1.46505 * 109.47103 * 66.16238 * 3 2 1 14 14 C 1.34772 * 120.00001 * 274.99708 * 13 3 2 15 15 O 1.21367 * 120.00069 * 0.02562 * 14 13 3 16 16 C 1.49323 * 119.99915 * 180.02562 * 14 13 3 17 17 O 1.21395 * 119.99944 * 0.02562 * 16 14 13 18 18 N 1.34772 * 119.99915 * 180.02562 * 16 14 13 19 19 C 1.39967 * 119.99703 * 185.69023 * 18 16 14 20 20 C 1.38860 * 120.03149 * 20.00290 * 19 18 16 21 21 C 1.38087 * 120.00138 * 179.74310 * 20 19 18 22 22 C 1.38758 * 120.06106 * 0.50559 * 21 20 19 23 23 O 1.35959 * 119.96999 * 179.74441 * 22 21 20 24 24 C 1.42899 * 116.99768 * 0.02562 * 23 22 21 25 25 C 1.38716 * 120.06422 * 359.76974 * 22 21 20 26 26 C 1.38262 * 119.99452 * 359.97438 * 25 22 21 27 27 F 1.35098 * 120.03318 * 179.97438 * 26 25 22 28 28 H 1.09003 * 109.47087 * 299.99607 * 1 2 3 29 29 H 1.09001 * 109.47734 * 59.99578 * 1 2 3 30 30 H 1.09004 * 109.47541 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46460 * 240.00060 * 2 1 3 32 32 H 1.08996 * 109.47314 * 120.00280 * 2 1 3 33 33 H 0.96997 * 120.00446 * 354.93788 * 8 7 5 34 34 H 0.96995 * 119.99444 * 95.00369 * 13 3 2 35 35 H 0.96997 * 120.00118 * 5.69569 * 18 16 14 36 36 H 1.08001 * 119.99649 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.96305 * 180.25617 * 21 20 19 38 38 H 1.08995 * 109.47082 * 300.00302 * 24 23 22 39 39 H 1.09010 * 109.46983 * 59.99595 * 24 23 22 40 40 H 1.08994 * 109.47325 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00742 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5894 1.9872 -0.8297 5 6 3.5392 1.4452 -0.1525 6 1 4.1635 1.8007 0.6539 7 6 4.1140 0.9939 -1.3217 8 7 5.3922 0.6857 -1.3498 9 14 3.0774 0.8205 -2.8659 10 1 3.9253 0.3210 -3.9780 11 1 1.9728 -0.1399 -2.6152 12 1 2.5099 2.1429 -3.2323 13 7 1.6764 2.0890 1.2634 14 6 0.4616 2.6550 1.4056 15 8 -0.3314 2.6288 0.4872 16 6 0.0913 3.3144 2.6932 17 8 0.8846 3.3411 3.6117 18 7 -1.1237 3.8800 2.8356 19 6 -1.4284 4.6007 3.9961 20 6 -0.4064 5.0910 4.7982 21 6 -0.7077 5.8065 5.9401 22 6 -2.0313 6.0274 6.2930 23 8 -2.3259 6.7277 7.4205 24 6 -1.2234 7.2065 8.1933 25 6 -3.0544 5.5339 5.4967 26 6 -2.7556 4.8217 4.3500 27 9 -3.7513 4.3403 3.5742 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9468 0.8448 -0.5700 34 1 2.3101 2.1097 1.9975 35 1 -1.7870 3.7875 2.1339 36 1 0.6242 4.9159 4.5268 37 1 0.0878 6.1911 6.5612 38 1 -0.6168 6.3629 8.5225 39 1 -0.6154 7.8751 7.5836 40 1 -1.5968 7.7473 9.0629 41 1 -4.0843 5.7060 5.7725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602035249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:02 Heat of formation + Delta-G solvation = -139.076785 kcal Electronic energy + Delta-G solvation = -27080.066057 eV Core-core repulsion = 22874.628675 eV Total energy + Delta-G solvation = -4205.437383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.12242 -42.27474 -41.08472 -40.11198 -38.30177 -37.34349 -35.78247 -34.48642 -33.21148 -32.02771 -30.45670 -29.35651 -28.17839 -26.16303 -24.58761 -24.11703 -23.09305 -21.98839 -21.36216 -20.51187 -19.67696 -19.21936 -18.63178 -17.91871 -17.56802 -17.27832 -17.08345 -16.96458 -16.65279 -16.41772 -16.00833 -15.77757 -15.49634 -15.18771 -14.95714 -14.54494 -14.49891 -14.15993 -14.01590 -13.74787 -13.66291 -13.56125 -13.31833 -12.78197 -12.67835 -12.57010 -12.50008 -12.29680 -12.01610 -11.79169 -11.42081 -11.25749 -11.13476 -10.65625 -10.49671 -10.05932 -10.04916 -8.93299 -8.82810 -6.47843 -0.28800 -0.00485 0.47568 1.13771 1.47454 1.52812 1.71264 2.00602 2.12828 2.42499 2.45975 2.53874 2.99561 3.07387 3.31775 3.63707 3.80033 4.06522 4.14812 4.28368 4.30105 4.36734 4.42997 4.43228 4.47685 4.76306 4.77620 4.82426 4.90783 5.07468 5.07789 5.12112 5.14105 5.21831 5.38167 5.49718 5.52360 5.59120 5.80354 5.97438 6.25063 6.34953 6.47257 6.60535 6.94515 7.29248 8.57531 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.002728 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.992505 B =10260.713961 C =11051.305606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.250 3.750 4 H 0.038 0.962 5 C -0.618 4.618 6 H 0.038 0.962 7 C -0.004 4.004 8 N -0.926 5.926 9 Si 1.071 2.929 10 H -0.284 1.284 11 H -0.239 1.239 12 H -0.269 1.269 13 N -0.667 5.667 14 C 0.499 3.501 15 O -0.538 6.538 16 C 0.517 3.483 17 O -0.513 6.513 18 N -0.629 5.629 19 C 0.062 3.938 20 C -0.081 4.081 21 C -0.186 4.186 22 C 0.142 3.858 23 O -0.323 6.323 24 C 0.014 3.986 25 C -0.167 4.167 26 C 0.108 3.892 27 F -0.132 7.132 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.258 0.742 34 H 0.409 0.591 35 H 0.430 0.570 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.123 0.877 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.894 11.418 16.868 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.146 3.854 4 H 0.055 0.945 5 C -0.656 4.656 6 H 0.056 0.944 7 C -0.205 4.205 8 N -0.560 5.560 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.163 1.163 12 H -0.195 1.195 13 N -0.316 5.316 14 C 0.279 3.721 15 O -0.417 6.417 16 C 0.300 3.700 17 O -0.389 6.389 18 N -0.275 5.275 19 C -0.033 4.033 20 C -0.101 4.101 21 C -0.205 4.205 22 C 0.095 3.905 23 O -0.236 6.236 24 C -0.080 4.080 25 C -0.186 4.186 26 C 0.086 3.914 27 F -0.110 7.110 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.245 0.755 35 H 0.269 0.731 36 H 0.173 0.827 37 H 0.182 0.818 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.141 0.859 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.999 10.907 15.296 25.336 hybrid contribution 0.698 0.379 1.481 1.681 sum -16.301 11.287 16.777 25.972 Atomic orbital electron populations 1.21814 0.95176 1.00927 1.01562 1.22284 0.95677 0.97752 1.02006 1.19021 0.94079 0.90154 0.82122 0.94451 1.22240 0.91243 1.48943 1.03202 0.94411 1.26916 0.97861 0.91753 1.03944 1.70980 1.07905 1.42905 1.34224 0.83740 0.75236 0.78990 0.72788 1.21023 1.16282 1.19457 1.46018 1.14225 1.53333 1.18020 1.19880 0.83632 0.80712 0.87864 1.90739 1.50121 1.59328 1.41540 1.20252 0.82428 0.79167 0.88196 1.90657 1.50386 1.57081 1.40731 1.42898 1.15322 1.49629 1.19608 1.17897 0.92741 1.01332 0.91303 1.21395 1.00061 0.94806 0.93838 1.21477 0.96117 1.03552 0.99374 1.18698 0.92285 0.92251 0.87291 1.86075 1.36812 1.67104 1.33610 1.23453 0.89032 0.99916 0.95598 1.20220 1.01394 1.03024 0.94008 1.16949 0.82272 1.00533 0.91641 1.91511 1.59679 1.86231 1.73621 0.93657 0.93148 0.92149 0.91531 0.92743 0.93296 0.75539 0.73092 0.82720 0.81843 0.91481 0.91307 0.85870 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 8.54 71.98 0.61 -4.33 16 2 C -0.14 -5.76 5.27 30.59 0.16 -5.60 16 3 C 0.25 11.38 1.81 44.24 0.08 11.46 16 4 H 0.04 1.80 6.24 -2.39 -0.01 1.78 16 5 C -0.62 -33.09 9.01 25.60 0.23 -32.86 16 6 H 0.04 2.17 7.96 -2.91 -0.02 2.15 16 7 C 0.00 -0.21 5.31 84.66 0.45 0.24 16 8 N -0.93 -55.28 13.70 21.45 0.29 -54.98 16 9 Si 1.07 48.14 26.27 68.60 1.80 49.95 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.24 -9.54 5.71 99.48 0.57 -8.97 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.67 -26.60 5.03 -447.56 -2.25 -28.85 16 14 C 0.50 18.07 6.51 87.23 0.57 18.64 16 15 O -0.54 -20.67 13.63 -3.30 -0.04 -20.72 16 16 C 0.52 16.17 7.73 87.23 0.67 16.85 16 17 O -0.51 -16.92 13.39 -3.39 -0.05 -16.96 16 18 N -0.63 -16.70 5.33 -304.57 -1.62 -18.32 16 19 C 0.06 1.52 6.51 38.20 0.25 1.77 16 20 C -0.08 -1.87 8.77 22.38 0.20 -1.67 16 21 C -0.19 -3.26 9.03 22.36 0.20 -3.06 16 22 C 0.14 2.47 6.69 22.51 0.15 2.62 16 23 O -0.32 -4.82 10.50 -93.09 -0.98 -5.79 16 24 C 0.01 0.10 9.81 113.37 1.11 1.22 16 25 C -0.17 -3.05 9.96 22.39 0.22 -2.83 16 26 C 0.11 2.33 7.31 22.49 0.16 2.50 16 27 F -0.13 -2.92 16.76 44.97 0.75 -2.17 16 28 H 0.04 1.61 5.62 -2.39 -0.01 1.60 16 29 H 0.05 1.84 7.91 -2.39 -0.02 1.82 16 30 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.07 2.85 4.80 -2.39 -0.01 2.84 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.26 15.51 8.73 -92.71 -0.81 14.70 16 34 H 0.41 15.82 7.99 -92.71 -0.74 15.08 16 35 H 0.43 10.57 7.85 -92.71 -0.73 9.84 16 36 H 0.16 4.01 5.44 -2.91 -0.02 3.99 16 37 H 0.16 1.96 6.29 -2.91 -0.02 1.94 16 38 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 39 H 0.07 0.39 7.66 -2.38 -0.02 0.37 16 40 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -64.06 343.38 2.45 -61.61 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: -0.53 Total: 31.29 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.07 Total: 4.94 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -3.58 Total: -102.15 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -1.07 Total: -43.47 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.75 Total: -2.17 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.80 Total: 49.95 kcal Total: -64.06 2.45 -61.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602035249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.470 kcal (2) G-P(sol) polarization free energy of solvation -64.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds