Wall clock time and date at job start Tue Mar 31 2020 13:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 C 1.53003 * 109.47132 * 239.99938 * 2 1 3 5 5 O 1.45196 * 109.47051 * 119.99788 * 2 1 3 6 6 C 1.34650 * 117.00052 * 59.99796 * 5 2 1 7 7 O 1.21518 * 120.00170 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00207 * 179.97438 * 6 5 2 9 9 C 1.40107 * 119.99810 * 185.63414 * 8 6 5 10 10 C 1.38437 * 120.00911 * 24.80161 * 9 8 6 11 11 C 1.39637 * 119.80454 * 179.97438 * 10 9 8 12 12 C 1.47626 * 120.09661 * 179.97438 * 11 10 9 13 13 O 1.21604 * 120.00176 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99459 * 179.97438 * 12 11 10 15 15 C 1.36894 * 119.99599 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00171 * 0.02562 * 15 14 12 17 17 C 1.39031 * 120.00208 * 180.02562 * 15 14 12 18 18 N 1.31373 * 120.00276 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99771 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46887 * 89.99943 * 19 17 15 21 21 H 1.48499 * 109.47174 * 209.99581 * 19 17 15 22 22 H 1.48496 * 109.47190 * 329.99669 * 19 17 15 23 23 C 1.39730 * 119.80685 * 0.02562 * 11 10 9 24 24 C 1.37884 * 120.00390 * 359.97438 * 23 11 10 25 25 C 1.38519 * 120.19796 * 359.97438 * 24 23 11 26 26 F 1.35109 * 119.89825 * 180.27787 * 25 24 23 27 27 H 1.08997 * 109.46994 * 300.00577 * 1 2 3 28 28 H 1.09008 * 109.46779 * 60.00115 * 1 2 3 29 29 H 1.08994 * 109.47432 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47129 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47179 * 299.99640 * 3 2 1 32 32 H 1.08997 * 109.47637 * 59.99817 * 3 2 1 33 33 H 1.08994 * 109.46829 * 300.00206 * 4 2 1 34 34 H 1.08999 * 109.47207 * 60.00123 * 4 2 1 35 35 H 1.09000 * 109.46889 * 180.02562 * 4 2 1 36 36 H 0.97001 * 119.99800 * 5.64023 * 8 6 5 37 37 H 1.08007 * 120.09348 * 359.95765 * 10 9 8 38 38 H 0.96991 * 120.00576 * 0.02562 * 14 12 11 39 39 H 0.97001 * 119.99965 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.99820 * 180.02562 * 23 11 10 41 41 H 1.07992 * 119.89995 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9724 1.3384 7 8 0.9515 -2.5098 0.5036 8 7 2.0679 -2.6658 2.4168 9 6 1.7915 -4.0356 2.5181 10 6 1.5759 -4.7848 1.3741 11 6 1.3012 -6.1498 1.4801 12 6 1.0697 -6.9549 0.2645 13 8 1.1185 -6.4295 -0.8312 14 7 0.8053 -8.2723 0.3690 15 6 0.5901 -9.0187 -0.7581 16 1 0.6326 -8.5520 -1.7312 17 6 0.3168 -10.3776 -0.6504 18 7 0.1107 -11.0941 -1.7321 19 14 0.2425 -11.1847 1.0326 20 1 -1.1467 -11.1172 1.5531 21 1 0.6601 -12.6053 0.9192 22 1 1.1550 -10.4734 1.9635 23 6 1.2451 -6.7513 2.7400 24 6 1.4611 -5.9975 3.8742 25 6 1.7346 -4.6436 3.7693 26 9 1.9509 -3.9119 4.8842 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 2.5585 -2.2164 3.1227 37 1 1.6197 -4.3149 0.4027 38 1 0.7667 -8.6914 1.2429 39 1 -0.0803 -12.0421 -1.6569 40 1 1.0333 -7.8069 2.8255 41 1 1.4177 -6.4642 4.8471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730542254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:31 Heat of formation + Delta-G solvation = -124.927328 kcal Electronic energy + Delta-G solvation = -27419.389467 eV Core-core repulsion = 23214.565651 eV Total energy + Delta-G solvation = -4204.823816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.95845 -41.21920 -39.54267 -38.14761 -36.92105 -35.04176 -34.19037 -34.04932 -31.89093 -30.50884 -29.59157 -27.62472 -27.51920 -25.46366 -23.97962 -22.99554 -21.95008 -20.22178 -19.74367 -19.04569 -18.39633 -17.62056 -17.14291 -16.56527 -16.28888 -16.21100 -15.64874 -15.21248 -15.05518 -14.66279 -14.56905 -14.02686 -13.80833 -13.75899 -13.62718 -13.17888 -12.99977 -12.74831 -12.62260 -12.55827 -12.23137 -12.14042 -12.08947 -12.06846 -11.67471 -11.64949 -11.32222 -11.20240 -10.72106 -10.67987 -10.48424 -10.10774 -9.94638 -9.72147 -8.68364 -8.67357 -8.32864 -8.17159 -6.49158 -3.91778 0.87913 1.27743 1.83848 2.61543 2.93692 2.98807 3.06964 3.34657 3.78728 3.96564 4.13057 4.28604 4.43449 4.50425 4.55282 4.69973 4.73073 5.16186 5.18880 5.23886 5.27119 5.30402 5.35033 5.42824 5.50373 5.55498 5.63581 5.69819 5.78104 5.91754 6.06470 6.15896 6.18819 6.24370 6.27297 6.37752 6.62114 6.94428 7.12524 7.41164 8.01101 8.13097 8.44490 8.79730 9.25486 9.72021 10.62397 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.003369 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.062988 B = 8310.164377 C = 9843.547018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.187 4.187 5 O -0.361 6.361 6 C 0.649 3.351 7 O -0.532 6.532 8 N -0.647 5.647 9 C 0.127 3.873 10 C -0.063 4.063 11 C -0.080 4.080 12 C 0.475 3.525 13 O -0.571 6.571 14 N -0.567 5.567 15 C -0.297 4.297 16 H 0.125 0.875 17 C 0.043 3.957 18 N -0.864 5.864 19 Si 0.878 3.122 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.266 1.266 23 C -0.100 4.100 24 C -0.130 4.130 25 C 0.064 3.936 26 F -0.141 7.141 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.417 0.583 37 H 0.170 0.830 38 H 0.372 0.628 39 H 0.278 0.722 40 H 0.133 0.867 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 19.032 11.635 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.244 4.244 5 O -0.277 6.277 6 C 0.403 3.597 7 O -0.419 6.419 8 N -0.298 5.298 9 C 0.032 3.968 10 C -0.084 4.084 11 C -0.085 4.085 12 C 0.263 3.737 13 O -0.455 6.455 14 N -0.204 5.204 15 C -0.425 4.425 16 H 0.143 0.857 17 C -0.162 4.162 18 N -0.502 5.502 19 Si 0.703 3.297 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.192 1.192 23 C -0.120 4.120 24 C -0.149 4.149 25 C 0.042 3.958 26 F -0.120 7.120 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.254 0.746 37 H 0.187 0.813 38 H 0.206 0.794 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.714 19.039 10.284 21.955 hybrid contribution 0.154 -0.482 1.842 1.911 sum 3.869 18.557 12.126 22.503 Atomic orbital electron populations 1.22540 0.93748 1.05454 1.02543 1.22166 0.94571 0.91427 0.81872 1.21862 1.02274 0.92382 1.03149 1.22556 1.01681 1.03958 0.96254 1.86282 1.71299 1.23098 1.46979 1.17993 0.78844 0.80811 0.82009 1.90996 1.38947 1.69503 1.42414 1.41796 1.58702 1.07068 1.22233 1.17310 1.04962 0.81742 0.92765 1.21430 0.96139 0.92069 0.98776 1.20301 1.00043 0.93971 0.94156 1.17395 0.86040 0.82247 0.88026 1.90673 1.56701 1.70877 1.27261 1.42207 1.61697 1.07837 1.08663 1.19576 1.44007 0.90787 0.88158 0.85717 1.25133 0.97131 0.96064 0.97907 1.69602 1.44649 1.08072 1.27871 0.86682 0.79272 0.80298 0.83400 1.19118 1.19714 1.19165 1.21227 0.99461 1.00173 0.91123 1.20783 1.02733 0.91173 1.00208 1.17353 1.07940 0.90351 0.80161 1.91454 1.92809 1.77245 1.50477 0.92204 0.90873 0.89092 0.91425 0.89965 0.91517 0.88901 0.90854 0.92026 0.74625 0.81333 0.79400 0.91147 0.84908 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 8.37 37.16 0.31 -1.64 16 2 C 0.14 1.42 1.13 -90.62 -0.10 1.32 16 3 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 4 C -0.19 -2.09 8.37 37.16 0.31 -1.78 16 5 O -0.36 -4.38 9.94 -40.35 -0.40 -4.78 16 6 C 0.65 9.24 7.86 54.06 0.42 9.67 16 7 O -0.53 -9.11 9.04 -19.29 -0.17 -9.29 16 8 N -0.65 -8.35 5.32 -14.24 -0.08 -8.43 16 9 C 0.13 1.90 6.43 -83.63 -0.54 1.36 16 10 C -0.06 -1.14 8.26 -38.99 -0.32 -1.46 16 11 C -0.08 -1.53 5.87 -104.99 -0.62 -2.14 16 12 C 0.47 11.38 7.72 -12.43 -0.10 11.28 16 13 O -0.57 -16.01 15.91 5.27 0.08 -15.92 16 14 N -0.57 -13.59 5.03 -11.90 -0.06 -13.65 16 15 C -0.30 -8.25 10.16 -15.00 -0.15 -8.40 16 16 H 0.13 3.95 7.38 -52.49 -0.39 3.56 16 17 C 0.04 1.14 5.50 -17.45 -0.10 1.04 16 18 N -0.86 -24.36 13.95 55.50 0.77 -23.59 16 19 Si 0.88 18.54 27.74 -169.99 -4.71 13.83 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.05 6.52 56.52 0.37 -4.68 16 23 C -0.10 -1.53 9.53 -39.15 -0.37 -1.90 16 24 C -0.13 -1.67 10.00 -39.61 -0.40 -2.07 16 25 C 0.06 0.87 7.31 -39.11 -0.29 0.58 16 26 F -0.14 -1.73 16.80 2.25 0.04 -1.69 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.42 4.17 8.55 -40.82 -0.35 3.82 16 37 H 0.17 3.45 5.37 -52.48 -0.28 3.17 16 38 H 0.37 7.71 3.78 -40.82 -0.15 7.55 16 39 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.13 1.85 6.39 -52.49 -0.34 1.51 16 41 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -32.32 346.45 -5.58 -37.90 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -4.67 Total: 15.22 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.60 Total: 5.18 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.64 Total: -45.66 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.49 Total: -29.99 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.71 Total: 13.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.32 -5.58 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730542254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.031 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds