Wall clock time and date at job start Tue Mar 31 2020 13:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 C 1.53003 * 109.47132 * 239.99938 * 2 1 3 5 5 O 1.45196 * 109.47051 * 119.99788 * 2 1 3 6 6 C 1.34650 * 117.00052 * 59.99796 * 5 2 1 7 7 O 1.21518 * 120.00170 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00207 * 179.97438 * 6 5 2 9 9 C 1.40107 * 119.99810 * 185.63414 * 8 6 5 10 10 C 1.38437 * 120.00911 * 24.80161 * 9 8 6 11 11 C 1.39637 * 119.80454 * 179.97438 * 10 9 8 12 12 C 1.47626 * 120.09661 * 179.97438 * 11 10 9 13 13 O 1.21604 * 120.00176 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99459 * 179.97438 * 12 11 10 15 15 C 1.36894 * 119.99599 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00171 * 0.02562 * 15 14 12 17 17 C 1.39031 * 120.00208 * 180.02562 * 15 14 12 18 18 N 1.31373 * 120.00276 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99771 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46887 * 89.99943 * 19 17 15 21 21 H 1.48499 * 109.47174 * 209.99581 * 19 17 15 22 22 H 1.48496 * 109.47190 * 329.99669 * 19 17 15 23 23 C 1.39730 * 119.80685 * 0.02562 * 11 10 9 24 24 C 1.37884 * 120.00390 * 359.97438 * 23 11 10 25 25 C 1.38519 * 120.19796 * 359.97438 * 24 23 11 26 26 F 1.35109 * 119.89825 * 180.27787 * 25 24 23 27 27 H 1.08997 * 109.46994 * 300.00577 * 1 2 3 28 28 H 1.09008 * 109.46779 * 60.00115 * 1 2 3 29 29 H 1.08994 * 109.47432 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47129 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47179 * 299.99640 * 3 2 1 32 32 H 1.08997 * 109.47637 * 59.99817 * 3 2 1 33 33 H 1.08994 * 109.46829 * 300.00206 * 4 2 1 34 34 H 1.08999 * 109.47207 * 60.00123 * 4 2 1 35 35 H 1.09000 * 109.46889 * 180.02562 * 4 2 1 36 36 H 0.97001 * 119.99800 * 5.64023 * 8 6 5 37 37 H 1.08007 * 120.09348 * 359.95765 * 10 9 8 38 38 H 0.96991 * 120.00576 * 0.02562 * 14 12 11 39 39 H 0.97001 * 119.99965 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.99820 * 180.02562 * 23 11 10 41 41 H 1.07992 * 119.89995 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9724 1.3384 7 8 0.9515 -2.5098 0.5036 8 7 2.0679 -2.6658 2.4168 9 6 1.7915 -4.0356 2.5181 10 6 1.5759 -4.7848 1.3741 11 6 1.3012 -6.1498 1.4801 12 6 1.0697 -6.9549 0.2645 13 8 1.1185 -6.4295 -0.8312 14 7 0.8053 -8.2723 0.3690 15 6 0.5901 -9.0187 -0.7581 16 1 0.6326 -8.5520 -1.7312 17 6 0.3168 -10.3776 -0.6504 18 7 0.1107 -11.0941 -1.7321 19 14 0.2425 -11.1847 1.0326 20 1 -1.1467 -11.1172 1.5531 21 1 0.6601 -12.6053 0.9192 22 1 1.1550 -10.4734 1.9635 23 6 1.2451 -6.7513 2.7400 24 6 1.4611 -5.9975 3.8742 25 6 1.7346 -4.6436 3.7693 26 9 1.9509 -3.9119 4.8842 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 2.5585 -2.2164 3.1227 37 1 1.6197 -4.3149 0.4027 38 1 0.7667 -8.6914 1.2429 39 1 -0.0803 -12.0421 -1.6569 40 1 1.0333 -7.8069 2.8255 41 1 1.4177 -6.4642 4.8471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730542254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:31 Heat of formation + Delta-G solvation = -148.577329 kcal Electronic energy + Delta-G solvation = -27420.415008 eV Core-core repulsion = 23214.565651 eV Total energy + Delta-G solvation = -4205.849357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.04532 -42.32368 -41.00547 -39.63693 -38.16397 -36.24302 -36.19958 -34.98967 -33.89715 -31.86079 -30.86539 -28.41538 -28.31894 -27.33358 -25.14336 -24.50597 -23.09285 -21.51246 -21.25956 -20.77326 -19.54663 -18.95443 -18.40172 -17.86217 -17.49605 -17.30678 -16.90980 -16.73052 -16.44266 -15.71507 -15.68341 -15.66388 -15.48863 -14.98815 -14.79599 -14.55768 -14.44290 -14.17634 -13.90294 -13.66732 -13.35471 -13.18622 -13.02113 -12.97660 -12.93682 -12.76701 -12.61752 -12.47401 -12.22762 -11.98856 -11.80265 -11.59787 -11.48349 -11.09234 -10.69470 -10.36584 -9.96021 -9.37227 -8.50061 -6.08540 -0.41508 0.04227 0.80647 1.28140 1.34589 1.44138 1.47770 1.87920 2.19187 2.62440 2.63996 2.87691 2.96179 3.18404 3.59438 3.69383 3.74229 3.86148 3.89492 4.01104 4.06541 4.26131 4.47441 4.57888 4.63805 4.73044 4.76205 4.81386 4.84017 4.86329 4.98988 5.04163 5.14587 5.23615 5.25120 5.28485 5.41734 5.49953 5.71000 5.85886 6.06047 6.47677 6.75084 7.06171 7.24403 7.81175 8.66544 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.003369 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.062988 B = 8310.164377 C = 9843.547018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.126 3.874 3 C -0.132 4.132 4 C -0.186 4.186 5 O -0.355 6.355 6 C 0.646 3.354 7 O -0.565 6.565 8 N -0.636 5.636 9 C 0.126 3.874 10 C -0.077 4.077 11 C -0.108 4.108 12 C 0.476 3.524 13 O -0.626 6.626 14 N -0.563 5.563 15 C -0.334 4.334 16 H 0.058 0.942 17 C -0.009 4.009 18 N -0.920 5.920 19 Si 0.958 3.042 20 H -0.250 1.250 21 H -0.268 1.268 22 H -0.224 1.224 23 C -0.084 4.084 24 C -0.108 4.108 25 C 0.092 3.908 26 F -0.124 7.124 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.433 0.567 37 H 0.135 0.865 38 H 0.392 0.608 39 H 0.284 0.716 40 H 0.156 0.844 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 20.123 17.018 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.090 3.910 3 C -0.189 4.189 4 C -0.243 4.243 5 O -0.269 6.269 6 C 0.401 3.599 7 O -0.453 6.453 8 N -0.289 5.289 9 C 0.031 3.969 10 C -0.099 4.099 11 C -0.112 4.112 12 C 0.266 3.734 13 O -0.513 6.513 14 N -0.202 5.202 15 C -0.463 4.463 16 H 0.076 0.924 17 C -0.209 4.209 18 N -0.559 5.559 19 Si 0.776 3.224 20 H -0.175 1.175 21 H -0.192 1.192 22 H -0.147 1.147 23 C -0.104 4.104 24 C -0.127 4.127 25 C 0.069 3.931 26 F -0.103 7.103 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.273 0.727 37 H 0.152 0.848 38 H 0.229 0.771 39 H 0.094 0.906 40 H 0.173 0.827 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 4.358 20.181 15.714 25.946 hybrid contribution 0.004 -0.548 0.164 0.572 sum 4.362 19.633 15.878 25.624 Atomic orbital electron populations 1.22500 0.93907 1.03516 1.04062 1.22521 0.94683 0.92940 0.80808 1.21885 1.02622 0.89702 1.04706 1.22527 1.01888 1.01990 0.97923 1.86310 1.71034 1.21836 1.47728 1.18208 0.78499 0.81402 0.81825 1.91020 1.40411 1.70314 1.43577 1.41705 1.58495 1.06356 1.22370 1.17237 1.04757 0.82354 0.92555 1.21146 0.97697 0.92266 0.98780 1.19867 1.04004 0.93753 0.93578 1.18321 0.83538 0.82411 0.89105 1.90633 1.58296 1.72113 1.30290 1.41868 1.62448 1.07570 1.08322 1.19080 1.47847 0.92106 0.87236 0.92404 1.26223 0.95201 0.95763 1.03763 1.69770 1.45883 1.08803 1.31396 0.85472 0.80908 0.78999 0.76979 1.17450 1.19246 1.14671 1.21415 0.97840 1.01389 0.89780 1.21214 0.99893 0.90287 1.01275 1.17381 1.05323 0.90709 0.79657 1.91517 1.92351 1.77018 1.49385 0.91097 0.88936 0.92663 0.90892 0.87852 0.90493 0.92907 0.88879 0.91610 0.72707 0.84755 0.77081 0.90577 0.82653 0.79086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.81 8.37 71.98 0.60 -3.21 16 2 C 0.13 2.57 1.13 -10.79 -0.01 2.56 16 3 C -0.13 -1.61 8.85 71.98 0.64 -0.97 16 4 C -0.19 -4.30 8.37 71.98 0.60 -3.70 16 5 O -0.35 -8.40 9.94 -55.60 -0.55 -8.95 16 6 C 0.65 18.68 7.86 129.79 1.02 19.70 16 7 O -0.56 -20.72 9.04 19.78 0.18 -20.54 16 8 N -0.64 -15.67 5.32 -429.36 -2.28 -17.95 16 9 C 0.13 3.58 6.43 38.10 0.25 3.82 16 10 C -0.08 -2.88 8.26 22.66 0.19 -2.69 16 11 C -0.11 -4.11 5.87 -20.10 -0.12 -4.22 16 12 C 0.48 24.06 7.72 86.72 0.67 24.73 16 13 O -0.63 -38.44 15.91 -4.04 -0.06 -38.50 16 14 N -0.56 -27.70 5.03 -309.81 -1.56 -29.26 16 15 C -0.33 -19.85 10.16 84.09 0.85 -19.00 16 16 H 0.06 4.10 7.38 -2.91 -0.02 4.08 16 17 C -0.01 -0.49 5.50 84.95 0.47 -0.02 16 18 N -0.92 -54.62 13.95 21.68 0.30 -54.31 16 19 Si 0.96 37.08 27.74 68.60 1.90 38.98 16 20 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 21 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.22 -7.05 6.52 99.48 0.65 -6.40 16 23 C -0.08 -2.26 9.53 22.55 0.21 -2.05 16 24 C -0.11 -2.15 10.00 22.25 0.22 -1.93 16 25 C 0.09 2.07 7.31 22.57 0.17 2.23 16 26 F -0.12 -2.36 16.80 44.97 0.76 -1.61 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.51 8.14 -2.38 -0.02 1.50 16 29 H 0.05 1.58 5.88 -2.39 -0.01 1.57 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 1.68 5.88 -2.39 -0.01 1.66 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.43 7.59 8.55 -92.71 -0.79 6.80 16 37 H 0.13 6.02 5.37 -2.91 -0.02 6.00 16 38 H 0.39 15.55 3.78 -92.71 -0.35 15.20 16 39 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.16 3.48 6.39 -2.91 -0.02 3.46 16 41 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -81.86 346.45 4.34 -77.52 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -0.09 Total: 39.38 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.76 Total: 15.26 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -3.54 Total: -101.53 kcal Atomic # 8 Polarization: -67.56 SS G_CDS: -0.44 Total: -68.00 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.76 Total: -1.61 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 1.90 Total: 38.98 kcal Total: -81.86 4.34 -77.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730542254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.060 kcal (2) G-P(sol) polarization free energy of solvation -81.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds