Wall clock time and date at job start Tue Mar 31 2020 15:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.27150 * 2 1 4 4 C 1.55202 * 110.36949 * 237.98704 * 2 1 3 5 5 C 1.55303 * 100.82589 * 204.80123 * 4 2 1 6 6 H 1.09004 * 110.84646 * 275.60166 * 5 4 2 7 7 N 1.46491 * 110.84906 * 152.18403 * 5 4 2 8 8 C 1.34776 * 120.00395 * 157.77427 * 7 5 4 9 9 O 1.21590 * 119.99744 * 359.97438 * 8 7 5 10 10 N 1.34772 * 120.00479 * 180.02562 * 8 7 5 11 11 C 1.40137 * 120.00383 * 175.62683 * 10 8 7 12 12 C 1.38691 * 120.07689 * 34.58857 * 11 10 8 13 13 C 1.38190 * 120.02507 * 180.02562 * 12 11 10 14 14 C 1.38545 * 120.17648 * 359.97438 * 13 12 11 15 15 F 1.35102 * 119.92576 * 180.28280 * 14 13 12 16 16 C 1.38348 * 120.14931 * 0.02562 * 14 13 12 17 17 C 1.38742 * 119.97458 * 0.02562 * 16 14 13 18 18 O 1.35778 * 120.08428 * 180.02562 * 17 16 14 19 19 C 1.34812 * 117.00316 * 354.56346 * 18 17 16 20 20 H 1.07998 * 119.99445 * 5.05003 * 19 18 17 21 21 C 1.38630 * 119.99853 * 185.04757 * 19 18 17 22 22 N 1.31571 * 120.00328 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99506 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47353 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46976 * 119.99930 * 23 21 19 26 26 H 1.48500 * 109.47142 * 239.99774 * 23 21 19 27 27 C 1.54383 * 102.43839 * 33.88816 * 5 4 2 28 28 O 1.43237 * 107.58661 * 338.74701 * 27 5 4 29 29 H 1.09000 * 109.47162 * 299.36294 * 1 2 3 30 30 H 1.09001 * 109.46728 * 59.36364 * 1 2 3 31 31 H 1.09004 * 109.47102 * 179.36402 * 1 2 3 32 32 H 1.09006 * 111.30272 * 86.86821 * 4 2 1 33 33 H 1.09001 * 111.05700 * 322.62535 * 4 2 1 34 34 H 0.97004 * 120.00143 * 337.76673 * 7 5 4 35 35 H 0.97006 * 119.99685 * 355.62489 * 10 8 7 36 36 H 1.08008 * 119.98427 * 0.04757 * 12 11 10 37 37 H 1.07998 * 119.91670 * 180.02562 * 13 12 11 38 38 H 1.07994 * 120.01176 * 180.02562 * 16 14 13 39 39 H 0.97005 * 119.99911 * 179.97438 * 22 21 19 40 40 H 1.09002 * 109.82909 * 98.26010 * 27 5 4 41 41 H 1.08995 * 109.83389 * 219.14342 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0703 -0.7713 -1.2337 5 6 3.4699 -1.2033 -0.7177 6 1 4.2001 -0.4074 -0.8644 7 7 3.9090 -2.4377 -1.3730 8 6 5.2207 -2.7430 -1.4257 9 8 6.0397 -1.9936 -0.9296 10 7 5.6247 -3.8784 -2.0290 11 6 6.9925 -4.1513 -2.1648 12 6 7.8814 -3.7575 -1.1758 13 6 9.2301 -4.0267 -1.3111 14 6 9.6986 -4.6905 -2.4333 15 9 11.0174 -4.9561 -2.5577 16 6 8.8183 -5.0866 -3.4243 17 6 7.4631 -4.8186 -3.2954 18 8 6.5971 -5.2068 -4.2664 19 6 7.1294 -5.7472 -5.3809 20 1 8.1923 -5.9297 -5.4379 21 6 6.3123 -6.0685 -6.4537 22 7 5.0173 -5.8467 -6.3841 23 14 7.0498 -6.8180 -7.9977 24 1 8.5172 -6.9655 -7.8242 25 1 6.4428 -8.1516 -8.2392 26 1 6.7756 -5.9320 -9.1576 27 6 3.2112 -1.4413 0.7856 28 8 2.0286 -0.7157 1.1414 29 1 -0.3633 0.5039 0.8956 30 1 -0.3633 0.5237 -0.8842 31 1 -0.3633 -1.0276 -0.0114 32 1 2.1561 -0.1185 -2.1024 33 1 1.4488 -1.6387 -1.4563 34 1 3.2557 -3.0355 -1.7690 35 1 4.9686 -4.5068 -2.3692 36 1 7.5194 -3.2405 -0.2993 37 1 9.9207 -3.7196 -0.5396 38 1 9.1858 -5.6042 -4.2980 39 1 4.4456 -6.0712 -7.1349 40 1 3.0624 -2.5050 0.9713 41 1 4.0581 -1.0792 1.3684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831554323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:34 Heat of formation + Delta-G solvation = -116.809639 kcal Electronic energy + Delta-G solvation = -27053.156757 eV Core-core repulsion = 22848.684950 eV Total energy + Delta-G solvation = -4204.471807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.25933 -40.53655 -39.62104 -38.61294 -36.44721 -34.64016 -34.09271 -32.43192 -32.35498 -30.27758 -29.36716 -27.93225 -26.21682 -25.52751 -22.98007 -21.99329 -21.65442 -21.19781 -20.37967 -18.43207 -18.33452 -17.71169 -17.08793 -16.84446 -16.00772 -15.47741 -15.28614 -15.21301 -15.02571 -14.85257 -14.37439 -14.25832 -13.88779 -13.81166 -13.57204 -13.52844 -13.26913 -12.86628 -12.78467 -12.39167 -12.19219 -12.05789 -11.82567 -11.66834 -11.45397 -11.36020 -11.09773 -11.00022 -10.75676 -10.53463 -9.94219 -9.81301 -9.71184 -9.47937 -9.11051 -8.99059 -7.89886 -7.12619 -6.63171 -4.20694 1.82890 2.10826 2.73020 3.03688 3.06501 3.11604 3.35205 3.61486 3.82587 4.18247 4.33514 4.37736 4.55180 4.72014 4.82101 4.85929 4.95114 4.99900 5.07151 5.11268 5.37925 5.41036 5.51433 5.55938 5.67767 5.71833 5.74260 5.82576 5.90264 6.01345 6.17361 6.42791 6.57462 6.66476 6.81258 6.89297 6.91632 7.04756 7.10282 7.25837 7.64167 7.81302 8.18362 8.76672 8.83615 9.44310 10.54102 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.003373 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.406455 B = 8299.542272 C =10500.764086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 H 0.074 0.926 4 C -0.160 4.160 5 C 0.136 3.864 6 H 0.106 0.894 7 N -0.736 5.736 8 C 0.705 3.295 9 O -0.584 6.584 10 N -0.662 5.662 11 C 0.077 3.923 12 C -0.050 4.050 13 C -0.228 4.228 14 C 0.129 3.871 15 F -0.151 7.151 16 C -0.259 4.259 17 C 0.158 3.842 18 O -0.170 6.170 19 C -0.392 4.392 20 H 0.095 0.905 21 C 0.043 3.957 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.039 3.961 28 O -0.379 6.379 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.401 0.599 35 H 0.411 0.589 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.271 0.729 40 H 0.073 0.927 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 6.953 8.782 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 H 0.092 0.908 4 C -0.198 4.198 5 C 0.029 3.971 6 H 0.124 0.876 7 N -0.392 5.392 8 C 0.406 3.594 9 O -0.462 6.462 10 N -0.309 5.309 11 C -0.018 4.018 12 C -0.070 4.070 13 C -0.248 4.248 14 C 0.109 3.891 15 F -0.130 7.130 16 C -0.280 4.280 17 C 0.102 3.898 18 O -0.073 6.073 19 C -0.467 4.467 20 H 0.112 0.888 21 C -0.162 4.162 22 N -0.495 5.495 23 Si 0.767 3.233 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.039 4.039 28 O -0.299 6.299 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.236 0.764 35 H 0.247 0.753 36 H 0.160 0.840 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.579 7.616 9.237 13.660 hybrid contribution 0.170 -1.065 -1.525 1.868 sum -6.409 6.551 7.713 11.978 Atomic orbital electron populations 1.21887 0.93483 1.02949 1.02484 1.22934 0.95056 0.95662 0.84386 0.90813 1.23649 0.95347 1.01757 0.99090 1.22272 0.96255 0.87342 0.91238 0.87593 1.44954 1.06342 1.25063 1.62872 1.15874 0.82482 0.81512 0.79515 1.90880 1.51766 1.51343 1.52171 1.42159 1.06524 1.21201 1.61010 1.16624 0.82727 1.07570 0.94891 1.20671 0.91397 0.97608 0.97362 1.20488 0.96129 1.08930 0.99300 1.17466 0.76848 0.99038 0.95741 1.91412 1.33084 1.92275 1.96250 1.20847 0.92672 1.11946 1.02491 1.18783 0.88714 0.93730 0.88567 1.83914 1.31752 1.67826 1.23765 1.21397 0.94563 1.40487 0.90289 0.88767 1.25274 0.95322 0.97026 0.98572 1.70017 1.03388 1.44151 1.31900 0.85618 0.79193 0.78631 0.79897 1.18941 1.20023 1.20047 1.23615 0.87818 0.97139 0.95328 1.88440 1.42630 1.65034 1.33763 0.91780 0.91117 0.91838 0.88931 0.89504 0.76437 0.75299 0.83953 0.85927 0.83952 0.91921 0.90860 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.63 37.16 0.36 -0.73 16 2 C 0.08 0.68 4.07 -25.56 -0.10 0.58 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.16 -1.38 6.23 -24.34 -0.15 -1.53 16 5 C 0.14 1.52 3.31 -65.99 -0.22 1.30 16 6 H 0.11 1.33 7.63 -51.93 -0.40 0.94 16 7 N -0.74 -9.29 5.13 -56.78 -0.29 -9.58 16 8 C 0.71 11.84 8.41 -86.92 -0.73 11.11 16 9 O -0.58 -11.31 13.45 5.29 0.07 -11.24 16 10 N -0.66 -11.87 5.20 -14.07 -0.07 -11.95 16 11 C 0.08 1.57 6.33 -83.44 -0.53 1.04 16 12 C -0.05 -0.95 8.69 -39.43 -0.34 -1.29 16 13 C -0.23 -4.21 10.02 -39.49 -0.40 -4.61 16 14 C 0.13 2.56 7.29 -39.43 -0.29 2.27 16 15 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 16 C -0.26 -5.60 9.14 -39.35 -0.36 -5.96 16 17 C 0.16 3.60 6.66 -38.94 -0.26 3.34 16 18 O -0.17 -4.36 9.31 0.01 0.00 -4.36 16 19 C -0.39 -10.21 9.49 30.88 0.29 -9.92 16 20 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -23.16 13.67 55.48 0.76 -22.40 16 23 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 27 C 0.04 0.45 7.56 37.88 0.29 0.73 16 28 O -0.38 -4.39 11.04 -35.23 -0.39 -4.78 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 34 H 0.40 4.23 8.55 -40.82 -0.35 3.89 16 35 H 0.41 6.93 8.58 -40.82 -0.35 6.58 16 36 H 0.14 2.64 6.19 -52.48 -0.33 2.31 16 37 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 38 H 0.14 3.08 5.64 -52.49 -0.30 2.79 16 39 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.07 0.83 8.02 -51.93 -0.42 0.42 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -30.10 351.22 -7.06 -37.16 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -4.91 Total: 12.85 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.54 Total: -2.66 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.39 Total: -43.92 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.32 Total: -20.37 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.10 -7.06 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831554323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.649 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds