Wall clock time and date at job start Tue Mar 31 2020 15:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.27150 * 2 1 4 4 C 1.55202 * 110.36949 * 237.98704 * 2 1 3 5 5 C 1.55303 * 100.82589 * 204.80123 * 4 2 1 6 6 H 1.09004 * 110.84646 * 275.60166 * 5 4 2 7 7 N 1.46491 * 110.84906 * 152.18403 * 5 4 2 8 8 C 1.34776 * 120.00395 * 157.77427 * 7 5 4 9 9 O 1.21590 * 119.99744 * 359.97438 * 8 7 5 10 10 N 1.34772 * 120.00479 * 180.02562 * 8 7 5 11 11 C 1.40137 * 120.00383 * 175.62683 * 10 8 7 12 12 C 1.38691 * 120.07689 * 34.58857 * 11 10 8 13 13 C 1.38190 * 120.02507 * 180.02562 * 12 11 10 14 14 C 1.38545 * 120.17648 * 359.97438 * 13 12 11 15 15 F 1.35102 * 119.92576 * 180.28280 * 14 13 12 16 16 C 1.38348 * 120.14931 * 0.02562 * 14 13 12 17 17 C 1.38742 * 119.97458 * 0.02562 * 16 14 13 18 18 O 1.35778 * 120.08428 * 180.02562 * 17 16 14 19 19 C 1.34812 * 117.00316 * 354.56346 * 18 17 16 20 20 H 1.07998 * 119.99445 * 5.05003 * 19 18 17 21 21 C 1.38630 * 119.99853 * 185.04757 * 19 18 17 22 22 N 1.31571 * 120.00328 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99506 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47353 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46976 * 119.99930 * 23 21 19 26 26 H 1.48500 * 109.47142 * 239.99774 * 23 21 19 27 27 C 1.54383 * 102.43839 * 33.88816 * 5 4 2 28 28 O 1.43237 * 107.58661 * 338.74701 * 27 5 4 29 29 H 1.09000 * 109.47162 * 299.36294 * 1 2 3 30 30 H 1.09001 * 109.46728 * 59.36364 * 1 2 3 31 31 H 1.09004 * 109.47102 * 179.36402 * 1 2 3 32 32 H 1.09006 * 111.30272 * 86.86821 * 4 2 1 33 33 H 1.09001 * 111.05700 * 322.62535 * 4 2 1 34 34 H 0.97004 * 120.00143 * 337.76673 * 7 5 4 35 35 H 0.97006 * 119.99685 * 355.62489 * 10 8 7 36 36 H 1.08008 * 119.98427 * 0.04757 * 12 11 10 37 37 H 1.07998 * 119.91670 * 180.02562 * 13 12 11 38 38 H 1.07994 * 120.01176 * 180.02562 * 16 14 13 39 39 H 0.97005 * 119.99911 * 179.97438 * 22 21 19 40 40 H 1.09002 * 109.82909 * 98.26010 * 27 5 4 41 41 H 1.08995 * 109.83389 * 219.14342 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0703 -0.7713 -1.2337 5 6 3.4699 -1.2033 -0.7177 6 1 4.2001 -0.4074 -0.8644 7 7 3.9090 -2.4377 -1.3730 8 6 5.2207 -2.7430 -1.4257 9 8 6.0397 -1.9936 -0.9296 10 7 5.6247 -3.8784 -2.0290 11 6 6.9925 -4.1513 -2.1648 12 6 7.8814 -3.7575 -1.1758 13 6 9.2301 -4.0267 -1.3111 14 6 9.6986 -4.6905 -2.4333 15 9 11.0174 -4.9561 -2.5577 16 6 8.8183 -5.0866 -3.4243 17 6 7.4631 -4.8186 -3.2954 18 8 6.5971 -5.2068 -4.2664 19 6 7.1294 -5.7472 -5.3809 20 1 8.1923 -5.9297 -5.4379 21 6 6.3123 -6.0685 -6.4537 22 7 5.0173 -5.8467 -6.3841 23 14 7.0498 -6.8180 -7.9977 24 1 8.5172 -6.9655 -7.8242 25 1 6.4428 -8.1516 -8.2392 26 1 6.7756 -5.9320 -9.1576 27 6 3.2112 -1.4413 0.7856 28 8 2.0286 -0.7157 1.1414 29 1 -0.3633 0.5039 0.8956 30 1 -0.3633 0.5237 -0.8842 31 1 -0.3633 -1.0276 -0.0114 32 1 2.1561 -0.1185 -2.1024 33 1 1.4488 -1.6387 -1.4563 34 1 3.2557 -3.0355 -1.7690 35 1 4.9686 -4.5068 -2.3692 36 1 7.5194 -3.2405 -0.2993 37 1 9.9207 -3.7196 -0.5396 38 1 9.1858 -5.6042 -4.2980 39 1 4.4456 -6.0712 -7.1349 40 1 3.0624 -2.5050 0.9713 41 1 4.0581 -1.0792 1.3684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831554323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:33 Heat of formation + Delta-G solvation = -136.757958 kcal Electronic energy + Delta-G solvation = -27054.021781 eV Core-core repulsion = 22848.684950 eV Total energy + Delta-G solvation = -4205.336831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.82434 -41.86209 -40.83444 -40.00802 -38.09219 -35.79147 -35.57856 -34.30531 -33.08686 -31.42055 -30.94814 -29.40251 -27.38558 -26.97212 -24.41581 -23.55062 -22.51521 -22.44923 -21.54423 -20.15045 -19.78049 -19.27909 -18.34505 -17.91266 -17.21405 -16.96171 -16.90106 -16.58065 -16.21543 -16.18781 -15.95658 -15.61350 -15.42827 -15.24869 -14.94551 -14.71229 -14.57983 -14.04696 -13.79801 -13.62024 -13.45043 -13.41351 -13.05258 -12.83832 -12.66260 -12.53972 -12.34985 -12.18249 -12.12426 -11.82958 -11.66108 -11.37245 -11.02946 -10.82762 -10.55314 -10.23438 -9.55003 -8.74895 -8.51409 -6.16750 0.20924 0.46800 1.37608 1.42964 1.48715 1.53462 1.98532 2.13873 2.68186 2.78349 3.01789 3.12759 3.21080 3.40838 3.46200 3.78003 3.90964 3.94922 4.01883 4.17031 4.20903 4.36742 4.43082 4.57408 4.66745 4.71498 4.81703 4.84936 4.93058 4.95431 5.02356 5.12797 5.22942 5.30125 5.32217 5.33425 5.42720 5.55785 5.86320 5.93878 6.01232 6.07542 6.89122 6.93903 7.40953 7.62822 8.69410 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.003373 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.406455 B = 8299.542272 C =10500.764086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.082 0.918 4 C -0.150 4.150 5 C 0.132 3.868 6 H 0.093 0.907 7 N -0.719 5.719 8 C 0.705 3.295 9 O -0.609 6.609 10 N -0.664 5.664 11 C 0.079 3.921 12 C -0.051 4.051 13 C -0.204 4.204 14 C 0.122 3.878 15 F -0.145 7.145 16 C -0.264 4.264 17 C 0.132 3.868 18 O -0.202 6.202 19 C -0.415 4.415 20 H 0.099 0.901 21 C -0.008 4.008 22 N -0.904 5.904 23 Si 1.010 2.990 24 H -0.258 1.258 25 H -0.267 1.267 26 H -0.270 1.270 27 C 0.044 3.956 28 O -0.395 6.395 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.413 0.587 35 H 0.415 0.585 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.274 0.726 40 H 0.072 0.928 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 7.554 9.172 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.100 0.900 4 C -0.188 4.188 5 C 0.026 3.974 6 H 0.111 0.889 7 N -0.375 5.375 8 C 0.405 3.595 9 O -0.489 6.489 10 N -0.311 5.311 11 C -0.016 4.016 12 C -0.071 4.071 13 C -0.223 4.223 14 C 0.102 3.898 15 F -0.124 7.124 16 C -0.285 4.285 17 C 0.078 3.922 18 O -0.107 6.107 19 C -0.491 4.491 20 H 0.116 0.884 21 C -0.208 4.208 22 N -0.541 5.541 23 Si 0.831 3.169 24 H -0.181 1.181 25 H -0.192 1.192 26 H -0.195 1.195 27 C -0.034 4.034 28 O -0.315 6.315 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.250 0.750 35 H 0.251 0.749 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.564 8.233 9.664 14.292 hybrid contribution 0.213 -1.125 -1.408 1.815 sum -6.351 7.108 8.255 12.610 Atomic orbital electron populations 1.21893 0.92055 1.03117 1.03431 1.23158 0.96185 0.95741 0.83489 0.90038 1.23648 0.93405 1.02330 0.99415 1.22370 0.97418 0.86119 0.91482 0.88898 1.44864 1.05048 1.25567 1.62041 1.15978 0.83548 0.80855 0.79071 1.90851 1.52872 1.51925 1.53289 1.42175 1.05809 1.21860 1.61265 1.16864 0.84141 1.06370 0.94265 1.20868 0.91550 0.97403 0.97301 1.20877 0.96353 1.06163 0.98954 1.17464 0.76957 0.99505 0.95841 1.91429 1.32437 1.92256 1.96239 1.20923 0.92787 1.11923 1.02889 1.19127 0.89157 0.94981 0.88893 1.83893 1.32653 1.69705 1.24453 1.21769 0.95066 1.41189 0.91049 0.88415 1.26339 0.95715 0.97292 1.01407 1.70117 1.04714 1.46131 1.33115 0.84631 0.78695 0.77920 0.75702 1.18121 1.19195 1.19509 1.23488 0.87745 0.97085 0.95077 1.88430 1.42498 1.65338 1.35207 0.91783 0.89231 0.92078 0.87623 0.88480 0.75048 0.74915 0.82887 0.82505 0.84660 0.91648 0.90938 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.63 71.98 0.69 -1.13 16 2 C 0.07 1.14 4.07 31.35 0.13 1.27 16 3 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.15 -2.30 6.23 32.14 0.20 -2.10 16 5 C 0.13 2.83 3.31 46.25 0.15 2.99 16 6 H 0.09 2.28 7.63 -2.38 -0.02 2.27 16 7 N -0.72 -17.53 5.13 -451.81 -2.32 -19.84 16 8 C 0.70 23.30 8.41 179.06 1.51 24.81 16 9 O -0.61 -23.19 13.45 -4.00 -0.05 -23.24 16 10 N -0.66 -23.83 5.20 -316.71 -1.65 -25.48 16 11 C 0.08 3.22 6.33 38.22 0.24 3.47 16 12 C -0.05 -1.86 8.69 22.37 0.19 -1.66 16 13 C -0.20 -7.01 10.02 22.33 0.22 -6.79 16 14 C 0.12 4.69 7.29 22.37 0.16 4.85 16 15 F -0.14 -5.25 17.26 44.97 0.78 -4.48 16 16 C -0.26 -11.50 9.14 22.42 0.20 -11.29 16 17 C 0.13 6.11 6.66 22.69 0.15 6.27 16 18 O -0.20 -10.72 9.31 -22.86 -0.21 -10.94 16 19 C -0.41 -22.25 9.49 67.91 0.64 -21.60 16 20 H 0.10 4.96 5.20 -2.91 -0.02 4.94 16 21 C -0.01 -0.41 5.49 84.83 0.47 0.06 16 22 N -0.90 -49.89 13.67 21.61 0.30 -49.59 16 23 Si 1.01 40.26 29.55 68.60 2.03 42.29 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 26 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 27 C 0.04 0.97 7.56 72.45 0.55 1.52 16 28 O -0.40 -8.70 11.04 -148.98 -1.65 -10.35 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.10 1.32 7.91 -2.39 -0.02 1.30 16 34 H 0.41 8.27 8.55 -92.71 -0.79 7.48 16 35 H 0.41 14.21 8.58 -92.70 -0.80 13.42 16 36 H 0.15 5.37 6.19 -2.91 -0.02 5.36 16 37 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.14 5.98 5.64 -2.91 -0.02 5.97 16 39 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 40 H 0.07 1.59 8.02 -2.39 -0.02 1.57 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.33 351.22 2.26 -63.08 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.48 Total: 37.89 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.52 Total: 0.66 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -3.67 Total: -94.92 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.91 Total: -44.52 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -65.33 2.26 -63.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831554323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.681 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds