Wall clock time and date at job start Tue Mar 31 2020 15:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35779 * 117.00192 * 2 1 4 4 C 1.38032 * 123.47083 * 0.21011 * 3 2 1 5 5 C 1.33610 * 115.08309 * 180.29972 * 4 3 2 6 6 S 1.70579 * 111.14671 * 359.72663 * 5 4 3 7 7 C 1.37263 * 123.47273 * 180.02562 * 3 2 1 8 8 C 1.41725 * 125.47439 * 359.97438 * 7 3 2 9 9 O 1.21771 * 120.00367 * 359.72200 * 8 7 3 10 10 N 1.34784 * 119.99890 * 179.72587 * 8 7 3 11 11 C 1.46500 * 119.99815 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.49612 * 35.06156 * 11 10 8 13 13 C 1.53191 * 109.49753 * 274.99424 * 11 10 8 14 14 N 1.46917 * 108.77720 * 294.65282 * 13 11 10 15 15 C 1.36939 * 120.63048 * 126.41065 * 14 13 11 16 16 H 1.08002 * 120.00337 * 332.61166 * 15 14 13 17 17 C 1.38821 * 119.99940 * 152.61486 * 15 14 13 18 18 N 1.31619 * 119.99782 * 159.34511 * 17 15 14 19 19 Si 1.86797 * 119.99780 * 339.33948 * 17 15 14 20 20 H 1.48501 * 109.46815 * 92.94646 * 19 17 15 21 21 H 1.48504 * 109.46873 * 212.94302 * 19 17 15 22 22 H 1.48500 * 109.47293 * 332.94799 * 19 17 15 23 23 C 1.46932 * 118.74172 * 306.39246 * 14 13 11 24 24 C 1.53191 * 108.77418 * 53.60532 * 23 14 13 25 25 C 1.53038 * 109.31248 * 305.37019 * 24 23 14 26 26 H 1.08997 * 109.45798 * 301.34226 * 25 24 23 27 27 C 1.53001 * 109.45867 * 181.38419 * 25 24 23 28 28 H 1.09002 * 109.46834 * 60.00310 * 1 2 3 29 29 H 1.08997 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47235 * 300.00469 * 1 2 3 31 31 H 1.08000 * 122.45574 * 0.02562 * 4 3 2 32 32 H 1.07996 * 124.42633 * 179.76679 * 5 4 3 33 33 H 0.96995 * 119.99748 * 359.97438 * 10 8 7 34 34 H 1.08997 * 109.58310 * 174.86267 * 13 11 10 35 35 H 1.09004 * 109.58621 * 54.44296 * 13 11 10 36 36 H 0.97001 * 119.99491 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.57978 * 293.82078 * 23 14 13 38 38 H 1.08998 * 109.70391 * 173.46230 * 23 14 13 39 39 H 1.09000 * 109.49798 * 65.31992 * 24 23 14 40 40 H 1.08999 * 109.49582 * 185.41504 * 24 23 14 41 41 H 1.09007 * 109.46932 * 59.99712 * 27 25 24 42 42 H 1.09001 * 109.47602 * 179.97438 * 27 25 24 43 43 H 1.09003 * 109.47614 * 299.99990 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3652 2.4108 0.0042 5 6 2.1390 3.5001 -0.0028 6 16 3.7923 3.0804 -0.0078 7 6 3.4094 1.3645 -0.0005 8 6 4.3567 0.3103 -0.0006 9 8 3.9794 -0.8474 0.0049 10 7 5.6753 0.5893 -0.0067 11 6 6.6545 -0.5003 -0.0073 12 1 6.2698 -1.3348 -0.5935 13 6 6.9085 -0.9603 1.4316 14 7 7.5468 0.1359 2.1729 15 6 7.0153 0.5821 3.3534 16 1 5.9562 0.4834 3.5404 17 6 7.8379 1.1615 4.3098 18 7 7.3221 1.9418 5.2358 19 14 9.6766 0.8335 4.2826 20 1 10.3577 1.8975 3.5020 21 1 10.1991 0.8281 5.6727 22 1 9.9349 -0.4857 3.6515 23 6 8.7664 0.7441 1.6237 24 6 8.4916 1.1850 0.1826 25 6 7.9674 -0.0078 -0.6204 26 1 8.7029 -0.8119 -0.5980 27 6 7.7245 0.4203 -2.0691 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2866 2.4660 0.0082 32 1 1.7663 4.5137 -0.0045 33 1 5.9759 1.5115 -0.0114 34 1 7.5661 -1.8296 1.4266 35 1 5.9614 -1.2189 1.9052 36 1 7.8970 2.3469 5.9039 37 1 9.5755 0.0137 1.6344 38 1 9.0474 1.6098 2.2234 39 1 7.7461 1.9802 0.1813 40 1 9.4143 1.5499 -0.2684 41 1 8.6597 0.7701 -2.5063 42 1 7.3515 -0.4291 -2.6414 43 1 6.9895 1.2250 -2.0919 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968566607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:06 Heat of formation + Delta-G solvation = -8.722618 kcal Electronic energy + Delta-G solvation = -26485.677179 eV Core-core repulsion = 22852.105553 eV Total energy + Delta-G solvation = -3633.571626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20581 -39.33929 -37.55387 -35.89120 -34.28201 -32.72478 -31.35793 -30.55915 -29.27556 -27.62361 -26.87822 -24.80190 -23.77102 -22.78417 -21.46180 -21.17730 -19.60930 -18.77694 -18.64706 -16.81594 -16.67638 -15.90886 -15.86434 -15.23349 -15.12684 -14.86800 -14.56370 -13.91553 -13.85323 -13.68968 -13.49442 -13.44503 -13.26738 -12.63673 -12.57886 -12.43605 -12.24244 -11.86643 -11.59536 -11.53806 -11.40395 -11.17588 -11.12678 -10.94453 -10.62714 -10.54939 -10.16652 -9.84080 -9.66255 -9.45654 -9.35860 -8.83470 -8.70997 -8.32518 -8.01307 -6.87566 -5.88794 -3.23538 0.58664 1.50546 1.83117 2.40007 3.34106 3.49659 3.51904 3.55052 3.66832 3.83886 4.57667 4.62837 5.00396 5.01951 5.02075 5.07372 5.08315 5.18812 5.25848 5.38974 5.43768 5.48680 5.60485 5.74986 5.80196 5.81892 5.92226 6.04923 6.10208 6.14124 6.19170 6.29551 6.40644 6.44535 6.60438 6.66446 6.78846 6.84836 7.11965 7.28334 8.01723 8.06157 8.40012 8.76612 9.01506 9.78818 10.16047 11.27398 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.004675 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.103984 B = 5987.677656 C = 6623.641647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.271 6.271 3 C 0.179 3.821 4 C -0.214 4.214 5 C -0.206 4.206 6 S 0.239 5.761 7 C -0.312 4.312 8 C 0.595 3.405 9 O -0.533 6.533 10 N -0.703 5.703 11 C 0.137 3.863 12 H 0.083 0.917 13 C 0.137 3.863 14 N -0.601 5.601 15 C -0.250 4.250 16 H 0.083 0.917 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.882 3.118 20 H -0.290 1.290 21 H -0.305 1.305 22 H -0.271 1.271 23 C 0.123 3.877 24 C -0.130 4.130 25 C -0.095 4.095 26 H 0.079 0.921 27 C -0.144 4.144 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.147 0.853 32 H 0.172 0.828 33 H 0.394 0.606 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.261 0.739 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 3.038 -15.631 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.182 6.182 3 C 0.118 3.882 4 C -0.248 4.248 5 C -0.345 4.345 6 S 0.505 5.495 7 C -0.432 4.432 8 C 0.382 3.618 9 O -0.413 6.413 10 N -0.354 5.354 11 C 0.031 3.969 12 H 0.101 0.899 13 C 0.010 3.990 14 N -0.325 5.325 15 C -0.378 4.378 16 H 0.101 0.899 17 C -0.177 4.177 18 N -0.553 5.553 19 Si 0.713 3.287 20 H -0.218 1.218 21 H -0.234 1.234 22 H -0.196 1.196 23 C -0.002 4.002 24 C -0.170 4.170 25 C -0.114 4.114 26 H 0.098 0.902 27 C -0.201 4.201 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.165 0.835 32 H 0.189 0.811 33 H 0.229 0.771 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.630 2.914 -15.463 17.488 hybrid contribution -0.509 -0.106 0.306 0.603 sum -8.139 2.808 -15.157 17.432 Atomic orbital electron populations 1.23141 0.78815 1.04163 1.01063 1.86342 1.20461 1.24155 1.87269 1.18237 0.90259 0.85342 0.94314 1.19990 1.01843 0.91014 1.11948 1.25022 0.99517 1.03624 1.06308 1.83192 1.02984 0.95831 1.67470 1.22854 0.95456 0.98395 1.26493 1.15455 0.81751 0.87570 0.76974 1.90826 1.79684 1.20048 1.50753 1.45743 1.04914 1.09959 1.74830 1.21477 0.87311 0.89454 0.98666 0.89902 1.21350 0.97584 0.89803 0.90308 1.44306 1.28223 1.36732 1.23204 1.18904 0.93381 1.34408 0.91129 0.89909 1.25269 0.97470 0.98801 0.96116 1.69844 1.35285 1.31600 1.18585 0.86964 0.87497 0.78779 0.75435 1.21806 1.23391 1.19650 1.21361 0.89438 0.97004 0.92443 1.22093 1.00167 0.97176 0.97559 1.21327 0.96676 0.99048 0.94364 0.90220 1.21835 1.01122 1.01223 0.95953 0.92860 0.88065 0.92668 0.83540 0.81074 0.77070 0.95143 0.91217 0.92945 0.95691 0.90898 0.92189 0.92350 0.92910 0.92941 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.94 101.05 1.00 1.24 16 2 O -0.27 -4.31 9.36 -36.57 -0.34 -4.65 16 3 C 0.18 2.77 6.70 -40.01 -0.27 2.50 16 4 C -0.21 -2.52 9.17 -41.28 -0.38 -2.90 16 5 C -0.21 -2.23 10.90 29.11 0.32 -1.91 16 6 S 0.24 3.12 22.00 -107.50 -2.37 0.75 16 7 C -0.31 -5.27 6.28 -38.61 -0.24 -5.51 16 8 C 0.59 11.53 7.56 -14.92 -0.11 11.41 16 9 O -0.53 -11.90 15.50 -12.39 -0.19 -12.09 16 10 N -0.70 -12.52 4.24 -56.55 -0.24 -12.76 16 11 C 0.14 2.41 2.24 -67.81 -0.15 2.26 16 12 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 13 C 0.14 2.87 6.12 -3.72 -0.02 2.85 16 14 N -0.60 -14.21 2.69 -172.32 -0.46 -14.67 16 15 C -0.25 -7.03 10.04 -15.05 -0.15 -7.18 16 16 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 17 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 18 N -0.91 -27.97 13.97 55.49 0.78 -27.19 16 19 Si 0.88 22.44 24.35 -169.99 -4.14 18.31 16 20 H -0.29 -7.05 6.62 56.52 0.37 -6.68 16 21 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 22 H -0.27 -6.82 6.63 56.52 0.37 -6.44 16 23 C 0.12 2.61 4.20 -3.71 -0.02 2.59 16 24 C -0.13 -2.16 5.20 -26.61 -0.14 -2.30 16 25 C -0.10 -1.43 2.48 -90.58 -0.22 -1.65 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 C -0.14 -1.78 9.05 37.16 0.34 -1.45 16 28 H 0.05 0.42 7.89 -51.93 -0.41 0.01 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.48 7.87 -51.93 -0.41 0.07 16 31 H 0.15 1.29 6.99 -52.49 -0.37 0.92 16 32 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.39 6.63 5.61 -40.82 -0.23 6.40 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.63 7.93 -51.93 -0.41 1.22 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 37 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 38 H 0.07 1.70 4.50 -51.93 -0.23 1.46 16 39 H 0.06 1.00 6.41 -51.93 -0.33 0.67 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.66 7.54 -51.93 -0.39 0.27 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -34.66 350.24 -7.94 -42.60 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.12 Total: 3.92 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.14 Total: 0.50 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.07 Total: -54.62 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.53 Total: -16.74 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.31 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.37 Total: 0.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.66 -7.94 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968566607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.876 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds