Wall clock time and date at job start Tue Mar 31 2020 15:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00039 * 2 1 4 4 C 1.50694 * 109.47200 * 180.02562 * 3 2 1 5 5 S 1.70453 * 124.58969 * 269.69717 * 4 3 2 6 6 C 1.75506 * 92.44364 * 179.97438 * 5 4 3 7 7 C 1.32777 * 110.57473 * 0.30066 * 6 5 4 8 8 C 1.36010 * 124.59260 * 90.00180 * 4 3 2 9 9 C 1.47191 * 123.45811 * 359.97438 * 8 4 3 10 10 O 1.21629 * 120.00057 * 25.15065 * 9 8 4 11 11 N 1.34782 * 119.99774 * 205.14557 * 9 8 4 12 12 C 1.47428 * 125.64734 * 5.45380 * 11 9 8 13 13 C 1.54919 * 104.82665 * 155.83366 * 12 11 9 14 14 C 1.55155 * 101.58183 * 37.01164 * 13 12 11 15 15 H 1.09004 * 110.72029 * 82.85943 * 14 13 12 16 16 N 1.46496 * 110.71853 * 206.13314 * 14 13 12 17 17 C 1.36939 * 120.00153 * 273.54671 * 16 14 13 18 18 H 1.08004 * 119.99708 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00193 * 179.97438 * 17 16 14 20 20 N 1.31612 * 119.99984 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99898 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47269 * 89.99677 * 21 19 17 23 23 H 1.48506 * 109.46979 * 209.99789 * 21 19 17 24 24 H 1.48499 * 109.47472 * 329.99713 * 21 19 17 25 25 C 1.47018 * 125.64710 * 185.14543 * 11 9 8 26 26 H 1.09001 * 109.88490 * 300.51806 * 25 11 9 27 27 C 1.53002 * 109.88222 * 61.67864 * 25 11 9 28 28 H 1.09005 * 109.47335 * 60.00125 * 1 2 3 29 29 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47177 * 299.99538 * 1 2 3 31 31 H 1.09000 * 109.46888 * 300.00028 * 3 2 1 32 32 H 1.08998 * 109.46878 * 59.99796 * 3 2 1 33 33 H 1.08006 * 124.71261 * 180.08222 * 6 5 4 34 34 H 1.08002 * 123.45608 * 179.79590 * 7 6 5 35 35 H 1.08999 * 110.36832 * 274.66956 * 12 11 9 36 36 H 1.09001 * 110.36328 * 37.00160 * 12 11 9 37 37 H 1.09001 * 110.99763 * 155.08704 * 13 12 11 38 38 H 1.09000 * 111.00109 * 278.89709 * 13 12 11 39 39 H 0.97000 * 120.00196 * 93.54659 * 16 14 13 40 40 H 0.96999 * 120.00678 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.46993 * 58.55117 * 27 25 11 42 42 H 1.09001 * 109.47089 * 178.54298 * 27 25 11 43 43 H 1.09002 * 109.47261 * 298.54641 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 16 4.4783 1.1172 1.4022 6 6 5.9588 0.9943 0.4677 7 6 5.6927 1.0150 -0.8329 8 6 4.2818 1.1257 -1.1206 9 6 3.7327 1.1689 -2.4856 10 8 2.6596 1.7025 -2.6928 11 7 4.4192 0.6172 -3.5058 12 6 5.6684 -0.1560 -3.3822 13 6 5.7050 -1.0544 -4.6438 14 6 5.1064 -0.1080 -5.7177 15 1 5.8720 0.5595 -6.1134 16 7 4.4801 -0.8775 -6.7955 17 6 5.2338 -1.3148 -7.8519 18 1 6.2901 -1.0928 -7.8902 19 6 4.6404 -2.0444 -8.8729 20 7 5.3647 -2.4643 -9.8885 21 14 2.8137 -2.4290 -8.8063 22 1 2.0544 -1.3434 -9.4772 23 1 2.5534 -3.7165 -9.4992 24 1 2.3811 -2.5331 -7.3896 25 6 4.0430 0.6813 -4.9256 26 1 3.0608 0.2310 -5.0696 27 6 4.0243 2.1379 -5.3937 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 1.6885 1.8463 0.8900 33 1 6.9491 0.9165 0.8918 34 1 6.4533 0.9548 -1.5973 35 1 6.5288 0.5130 -3.3679 36 1 5.6477 -0.7685 -2.4808 37 1 6.7284 -1.3331 -4.8952 38 1 5.0826 -1.9394 -4.5114 39 1 3.5315 -1.0772 -6.7609 40 1 4.9502 -2.9738 -10.6022 41 1 5.0081 2.5815 -5.2402 42 1 3.7700 2.1759 -6.4529 43 1 3.2816 2.6939 -4.8215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986427367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:25 Heat of formation + Delta-G solvation = -19.620253 kcal Electronic energy + Delta-G solvation = -25714.393416 eV Core-core repulsion = 22080.349233 eV Total energy + Delta-G solvation = -3634.044183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.37679 -38.43604 -37.49285 -36.74576 -34.27667 -31.77046 -31.36040 -31.03752 -29.73341 -27.42716 -25.96501 -25.45029 -23.88422 -22.87540 -22.38050 -20.72415 -20.14520 -18.69637 -17.80271 -17.53219 -16.69532 -16.42475 -16.12528 -15.62498 -15.56744 -14.75454 -14.65063 -14.32344 -14.02637 -13.70445 -13.45008 -13.23658 -13.00247 -12.78910 -12.68746 -12.39605 -12.30066 -12.08264 -11.95081 -11.81703 -11.57694 -11.34809 -11.21053 -11.18460 -10.86565 -10.62719 -10.37610 -10.10549 -10.01239 -9.64855 -9.48627 -9.18084 -8.97677 -8.68106 -8.43764 -7.34747 -5.82701 -3.19839 0.52040 1.25900 1.66191 1.85656 3.10128 3.24588 3.36211 3.39995 3.44265 3.72055 4.47355 4.55053 4.57292 4.74646 4.89643 4.92969 5.13263 5.13630 5.19845 5.21142 5.25824 5.39811 5.47047 5.50498 5.50895 5.55691 5.65447 5.70593 5.75974 5.83460 5.91064 5.98557 6.03144 6.20262 6.33029 6.49017 6.52459 6.61206 6.80813 6.90048 7.65979 7.91410 8.25416 8.35837 9.12631 9.85368 10.03746 11.35081 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.003397 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.097796 B = 8240.015364 C = 9073.028628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.117 3.883 4 C -0.157 4.157 5 S 0.187 5.813 6 C -0.229 4.229 7 C -0.112 4.112 8 C -0.136 4.136 9 C 0.595 3.405 10 O -0.540 6.540 11 N -0.601 5.601 12 C 0.096 3.904 13 C -0.155 4.155 14 C 0.182 3.818 15 H 0.075 0.925 16 N -0.739 5.739 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.009 3.991 20 N -0.931 5.931 21 Si 0.881 3.119 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.126 3.874 26 H 0.075 0.925 27 C -0.155 4.155 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.363 0.637 40 H 0.261 0.739 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 8.658 24.820 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.039 3.961 4 C -0.277 4.277 5 S 0.454 5.546 6 C -0.365 4.365 7 C -0.141 4.141 8 C -0.154 4.154 9 C 0.383 3.617 10 O -0.419 6.419 11 N -0.333 5.333 12 C -0.027 4.027 13 C -0.197 4.197 14 C 0.071 3.929 15 H 0.093 0.907 16 N -0.381 5.381 17 C -0.377 4.377 18 H 0.110 0.890 19 C -0.187 4.187 20 N -0.578 5.578 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C 0.022 3.978 26 H 0.093 0.907 27 C -0.213 4.213 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.188 0.812 34 H 0.175 0.825 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.196 0.804 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.268 8.784 26.116 27.646 hybrid contribution -1.014 -0.331 -1.555 1.886 sum -3.282 8.452 24.561 26.181 Atomic orbital electron populations 1.22747 0.80484 1.02926 1.00150 1.87920 1.19995 1.26801 1.95538 1.21090 0.86064 0.86036 1.02900 1.24069 0.99859 1.06528 0.97291 1.82955 0.95308 1.69090 1.07214 1.25499 1.02413 1.11308 0.97234 1.21561 0.94807 1.01127 0.96637 1.20196 0.93053 1.08500 0.93645 1.17146 0.83528 0.78238 0.82810 1.90687 1.21111 1.46052 1.84062 1.48361 1.25591 1.52682 1.06703 1.22624 0.86018 0.93925 1.00168 1.23561 1.02891 0.98980 0.94223 1.21222 0.92757 0.91482 0.87456 0.90748 1.42704 1.08075 1.64512 1.22832 1.19019 0.94038 1.28074 0.96566 0.88981 1.24647 0.97330 1.00061 0.96644 1.69688 1.34902 1.41983 1.11201 0.86602 0.86879 0.77935 0.77448 1.20911 1.21633 1.20272 1.21914 0.99788 0.97039 0.79052 0.90667 1.22059 1.01893 0.95366 1.02001 0.93540 0.89447 0.94151 0.88143 0.92512 0.81179 0.82484 0.91410 0.90755 0.89993 0.90643 0.80351 0.92938 0.92702 0.90997 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.18 10.69 -35.23 -0.38 -5.56 16 3 C 0.12 1.45 5.97 36.00 0.22 1.67 16 4 C -0.16 -1.96 5.96 -35.11 -0.21 -2.17 16 5 S 0.19 1.70 22.97 -107.50 -2.47 -0.77 16 6 C -0.23 -1.96 11.12 28.86 0.32 -1.63 16 7 C -0.11 -1.17 8.52 -39.02 -0.33 -1.50 16 8 C -0.14 -1.82 5.67 -104.63 -0.59 -2.41 16 9 C 0.60 9.56 7.38 -12.62 -0.09 9.46 16 10 O -0.54 -9.91 13.65 5.25 0.07 -9.84 16 11 N -0.60 -9.23 3.07 -164.36 -0.50 -9.74 16 12 C 0.10 1.24 5.11 -2.52 -0.01 1.22 16 13 C -0.16 -2.47 6.76 -24.58 -0.17 -2.63 16 14 C 0.18 3.33 3.11 -66.10 -0.21 3.12 16 15 H 0.07 1.37 7.84 -51.93 -0.41 0.96 16 16 N -0.74 -16.87 5.05 -51.66 -0.26 -17.13 16 17 C -0.25 -6.70 10.46 -15.06 -0.16 -6.86 16 18 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 21 Si 0.88 21.89 27.74 -169.99 -4.71 17.18 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C 0.13 2.14 3.18 -66.96 -0.21 1.92 16 26 H 0.08 1.42 7.68 -51.93 -0.40 1.02 16 27 C -0.16 -2.45 9.10 37.16 0.34 -2.11 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 1.42 5.74 -51.93 -0.30 1.13 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.16 1.41 5.44 -52.49 -0.29 1.12 16 35 H 0.07 0.73 7.02 -51.93 -0.36 0.36 16 36 H 0.07 0.88 6.88 -51.93 -0.36 0.52 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.36 8.36 5.36 -40.82 -0.22 8.14 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.99 7.06 -51.93 -0.37 0.63 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -32.84 359.32 -8.25 -41.09 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.09 Total: 7.47 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -0.09 Total: -0.29 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.01 Total: -54.70 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.30 Total: -15.40 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.47 Total: -0.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.84 -8.25 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986427367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.471 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds