Wall clock time and date at job start Tue Mar 31 2020 15:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00039 * 2 1 4 4 C 1.50694 * 109.47200 * 180.02562 * 3 2 1 5 5 S 1.70453 * 124.58969 * 269.69717 * 4 3 2 6 6 C 1.75506 * 92.44364 * 179.97438 * 5 4 3 7 7 C 1.32777 * 110.57473 * 0.30066 * 6 5 4 8 8 C 1.36010 * 124.59260 * 90.00180 * 4 3 2 9 9 C 1.47191 * 123.45811 * 359.97438 * 8 4 3 10 10 O 1.21629 * 120.00057 * 25.15065 * 9 8 4 11 11 N 1.34782 * 119.99774 * 205.14557 * 9 8 4 12 12 C 1.47428 * 125.64734 * 5.45380 * 11 9 8 13 13 C 1.54919 * 104.82665 * 155.83366 * 12 11 9 14 14 C 1.55155 * 101.58183 * 37.01164 * 13 12 11 15 15 H 1.09004 * 110.72029 * 82.85943 * 14 13 12 16 16 N 1.46496 * 110.71853 * 206.13314 * 14 13 12 17 17 C 1.36939 * 120.00153 * 273.54671 * 16 14 13 18 18 H 1.08004 * 119.99708 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00193 * 179.97438 * 17 16 14 20 20 N 1.31612 * 119.99984 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99898 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47269 * 89.99677 * 21 19 17 23 23 H 1.48506 * 109.46979 * 209.99789 * 21 19 17 24 24 H 1.48499 * 109.47472 * 329.99713 * 21 19 17 25 25 C 1.47018 * 125.64710 * 185.14543 * 11 9 8 26 26 H 1.09001 * 109.88490 * 300.51806 * 25 11 9 27 27 C 1.53002 * 109.88222 * 61.67864 * 25 11 9 28 28 H 1.09005 * 109.47335 * 60.00125 * 1 2 3 29 29 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47177 * 299.99538 * 1 2 3 31 31 H 1.09000 * 109.46888 * 300.00028 * 3 2 1 32 32 H 1.08998 * 109.46878 * 59.99796 * 3 2 1 33 33 H 1.08006 * 124.71261 * 180.08222 * 6 5 4 34 34 H 1.08002 * 123.45608 * 179.79590 * 7 6 5 35 35 H 1.08999 * 110.36832 * 274.66956 * 12 11 9 36 36 H 1.09001 * 110.36328 * 37.00160 * 12 11 9 37 37 H 1.09001 * 110.99763 * 155.08704 * 13 12 11 38 38 H 1.09000 * 111.00109 * 278.89709 * 13 12 11 39 39 H 0.97000 * 120.00196 * 93.54659 * 16 14 13 40 40 H 0.96999 * 120.00678 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.46993 * 58.55117 * 27 25 11 42 42 H 1.09001 * 109.47089 * 178.54298 * 27 25 11 43 43 H 1.09002 * 109.47261 * 298.54641 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 16 4.4783 1.1172 1.4022 6 6 5.9588 0.9943 0.4677 7 6 5.6927 1.0150 -0.8329 8 6 4.2818 1.1257 -1.1206 9 6 3.7327 1.1689 -2.4856 10 8 2.6596 1.7025 -2.6928 11 7 4.4192 0.6172 -3.5058 12 6 5.6684 -0.1560 -3.3822 13 6 5.7050 -1.0544 -4.6438 14 6 5.1064 -0.1080 -5.7177 15 1 5.8720 0.5595 -6.1134 16 7 4.4801 -0.8775 -6.7955 17 6 5.2338 -1.3148 -7.8519 18 1 6.2901 -1.0928 -7.8902 19 6 4.6404 -2.0444 -8.8729 20 7 5.3647 -2.4643 -9.8885 21 14 2.8137 -2.4290 -8.8063 22 1 2.0544 -1.3434 -9.4772 23 1 2.5534 -3.7165 -9.4992 24 1 2.3811 -2.5331 -7.3896 25 6 4.0430 0.6813 -4.9256 26 1 3.0608 0.2310 -5.0696 27 6 4.0243 2.1379 -5.3937 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 1.6885 1.8463 0.8900 33 1 6.9491 0.9165 0.8918 34 1 6.4533 0.9548 -1.5973 35 1 6.5288 0.5130 -3.3679 36 1 5.6477 -0.7685 -2.4808 37 1 6.7284 -1.3331 -4.8952 38 1 5.0826 -1.9394 -4.5114 39 1 3.5315 -1.0772 -6.7609 40 1 4.9502 -2.9738 -10.6022 41 1 5.0081 2.5815 -5.2402 42 1 3.7700 2.1759 -6.4529 43 1 3.2816 2.6939 -4.8215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986427367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:24 Heat of formation + Delta-G solvation = -41.838598 kcal Electronic energy + Delta-G solvation = -25715.356876 eV Core-core repulsion = 22080.349233 eV Total energy + Delta-G solvation = -3635.007642 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54960 -39.52279 -38.60657 -37.70660 -36.04787 -33.60049 -32.36717 -32.18725 -31.32100 -28.31141 -26.96698 -26.87306 -25.05337 -24.31673 -23.62824 -21.78958 -21.54445 -19.94524 -19.47758 -18.54161 -17.77645 -17.53640 -17.20227 -16.73075 -16.45533 -16.40618 -15.93778 -15.55679 -15.32997 -14.91213 -14.72145 -14.67231 -14.14686 -14.03799 -13.87478 -13.62470 -13.47483 -13.29910 -13.18926 -13.04432 -12.82458 -12.70410 -12.56657 -12.39694 -12.16474 -12.11268 -11.87858 -11.80902 -11.58236 -11.09491 -10.97272 -10.55429 -9.98033 -9.71566 -9.38753 -9.30800 -8.02892 -5.36622 -0.33397 0.50785 0.91705 1.02489 1.37662 1.38480 1.44952 1.92813 2.16143 2.46719 2.87262 3.26728 3.46046 3.51857 3.69917 3.71698 3.91778 3.93648 4.11137 4.24555 4.27877 4.31820 4.40788 4.42331 4.46147 4.49451 4.61389 4.66102 4.66891 4.75352 4.87829 4.89735 4.99368 5.07108 5.19397 5.19880 5.26247 5.32902 5.41281 5.77108 6.03855 6.20927 6.48393 7.04033 7.07085 7.79962 7.97662 9.18043 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.003397 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.097796 B = 8240.015364 C = 9073.028628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.116 3.884 4 C -0.185 4.185 5 S 0.241 5.759 6 C -0.215 4.215 7 C -0.125 4.125 8 C -0.159 4.159 9 C 0.588 3.412 10 O -0.574 6.574 11 N -0.602 5.602 12 C 0.104 3.896 13 C -0.150 4.150 14 C 0.175 3.825 15 H 0.077 0.923 16 N -0.745 5.745 17 C -0.223 4.223 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.979 5.979 21 Si 0.943 3.057 22 H -0.280 1.280 23 H -0.295 1.295 24 H -0.261 1.261 25 C 0.132 3.868 26 H 0.051 0.949 27 C -0.146 4.146 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.207 0.793 34 H 0.172 0.828 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.362 0.638 40 H 0.258 0.742 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 9.139 28.159 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C 0.038 3.962 4 C -0.305 4.305 5 S 0.508 5.492 6 C -0.350 4.350 7 C -0.153 4.153 8 C -0.178 4.178 9 C 0.378 3.622 10 O -0.456 6.456 11 N -0.335 5.335 12 C -0.018 4.018 13 C -0.190 4.190 14 C 0.066 3.934 15 H 0.095 0.905 16 N -0.387 5.387 17 C -0.354 4.354 18 H 0.088 0.912 19 C -0.247 4.247 20 N -0.629 5.629 21 Si 0.771 3.229 22 H -0.207 1.207 23 H -0.222 1.222 24 H -0.186 1.186 25 C 0.027 3.973 26 H 0.069 0.931 27 C -0.204 4.204 28 H 0.055 0.945 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.224 0.776 34 H 0.189 0.811 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.195 0.805 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.450 9.287 29.528 30.988 hybrid contribution -1.222 -0.417 -2.444 2.765 sum -2.672 8.870 27.083 28.624 Atomic orbital electron populations 1.22915 0.79106 1.03906 1.00849 1.87870 1.21693 1.27590 1.95671 1.21068 0.86641 0.85659 1.02791 1.24340 1.00259 1.06926 0.99003 1.82779 0.94421 1.67127 1.04832 1.25957 1.03751 1.08797 0.96539 1.21609 0.93435 1.02379 0.97910 1.20191 0.94827 1.10710 0.92083 1.17682 0.83097 0.77524 0.83914 1.90668 1.22653 1.47525 1.84761 1.48392 1.26379 1.52958 1.05741 1.22743 0.85994 0.93908 0.99119 1.23406 1.02665 0.98248 0.94696 1.21409 0.93080 0.91856 0.87038 0.90475 1.42720 1.07883 1.65037 1.23105 1.19001 0.93307 1.26103 0.97011 0.91249 1.25328 1.01476 1.01150 0.96777 1.69839 1.36756 1.43968 1.12377 0.85594 0.81956 0.77258 0.78059 1.20669 1.22190 1.18629 1.21655 0.98045 0.97195 0.80384 0.93079 1.21965 1.02531 0.94603 1.01310 0.94512 0.88381 0.91762 0.90788 0.90112 0.77646 0.81065 0.88155 0.88951 0.89107 0.92337 0.80471 0.93336 0.91099 0.91646 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.79 16 2 O -0.41 -10.84 10.69 -148.98 -1.59 -12.44 16 3 C 0.12 2.82 5.97 71.23 0.43 3.25 16 4 C -0.18 -4.30 5.96 25.17 0.15 -4.15 16 5 S 0.24 3.55 22.97 -56.49 -1.30 2.25 16 6 C -0.22 -2.71 11.12 66.64 0.74 -1.97 16 7 C -0.13 -2.18 8.52 22.67 0.19 -1.98 16 8 C -0.16 -4.00 5.67 -19.87 -0.11 -4.11 16 9 C 0.59 18.64 7.38 86.59 0.64 19.28 16 10 O -0.57 -21.64 13.65 -4.12 -0.06 -21.69 16 11 N -0.60 -17.87 3.07 -792.14 -2.43 -20.30 16 12 C 0.10 2.42 5.11 86.86 0.44 2.87 16 13 C -0.15 -4.52 6.76 31.99 0.22 -4.30 16 14 C 0.18 6.30 3.11 46.18 0.14 6.44 16 15 H 0.08 2.75 7.84 -2.38 -0.02 2.74 16 16 N -0.74 -33.95 5.05 -317.34 -1.60 -35.55 16 17 C -0.22 -12.23 10.46 84.03 0.88 -11.35 16 18 H 0.07 4.07 8.06 -2.91 -0.02 4.04 16 19 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 20 N -0.98 -61.62 13.97 21.65 0.30 -61.32 16 21 Si 0.94 45.87 27.74 68.60 1.90 47.77 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.26 -11.86 6.52 99.48 0.65 -11.21 16 25 C 0.13 4.44 3.18 45.34 0.14 4.58 16 26 H 0.05 1.97 7.68 -2.39 -0.02 1.95 16 27 C -0.15 -4.57 9.10 71.98 0.66 -3.91 16 28 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 2.17 5.74 -2.39 -0.01 2.16 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.21 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.17 2.34 5.44 -2.91 -0.02 2.33 16 35 H 0.10 1.74 7.02 -2.39 -0.02 1.73 16 36 H 0.09 1.89 6.88 -2.39 -0.02 1.87 16 37 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.36 16.60 5.36 -92.71 -0.50 16.10 16 40 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 1.75 7.06 -2.39 -0.02 1.73 16 Total: -1.00 -73.55 359.32 1.94 -71.61 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.48 Total: 25.98 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.23 Total: 3.69 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -3.73 Total: -117.17 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.65 Total: -34.13 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.77 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.30 Total: 2.25 kcal Total: -73.55 1.94 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986427367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.771 kcal (2) G-P(sol) polarization free energy of solvation -73.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds