Wall clock time and date at job start Tue Mar 31 2020 13:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09001 * 110.64453 * 29.29845 * 3 2 1 5 5 C 1.54324 * 110.72025 * 266.15775 * 3 2 1 6 6 N 1.47026 * 107.27213 * 219.44569 * 5 3 2 7 7 C 1.36935 * 125.65076 * 178.97870 * 6 5 3 8 8 H 1.08000 * 120.00472 * 179.97438 * 7 6 5 9 9 C 1.38821 * 119.99849 * 359.97115 * 7 6 5 10 10 N 1.31614 * 119.99887 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99882 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47326 * 59.99856 * 11 9 7 13 13 H 1.48506 * 109.46695 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46983 * 299.99794 * 11 9 7 15 15 C 1.47420 * 108.70329 * 358.94050 * 6 5 3 16 16 C 1.55125 * 104.94335 * 24.00394 * 15 6 5 17 17 H 1.08993 * 110.93790 * 81.21146 * 16 15 6 18 18 N 1.46505 * 111.16262 * 205.13376 * 16 15 6 19 19 C 1.34772 * 119.99676 * 267.16575 * 18 16 15 20 20 O 1.21281 * 120.00356 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00207 * 179.97438 * 19 18 16 22 22 H 1.09003 * 109.47279 * 300.00985 * 21 19 18 23 23 C 1.53004 * 109.46551 * 60.00019 * 21 19 18 24 24 C 1.50697 * 109.47706 * 180.02562 * 21 19 18 25 25 C 1.33387 * 125.20611 * 119.99895 * 24 21 19 26 26 C 1.38419 * 114.92050 * 179.97438 * 25 24 21 27 27 C 1.33386 * 114.92246 * 0.02562 * 26 25 24 28 28 S 1.75885 * 109.59466 * 359.75773 * 27 26 25 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.88161 * 338.86283 * 5 3 2 33 33 H 1.08996 * 109.88396 * 99.87531 * 5 3 2 34 34 H 0.97004 * 120.00384 * 179.97438 * 10 9 7 35 35 H 1.08997 * 110.36876 * 142.96438 * 15 6 5 36 36 H 1.09005 * 110.36834 * 265.18397 * 15 6 5 37 37 H 0.97001 * 120.00264 * 87.16708 * 18 16 15 38 38 H 1.08995 * 109.46847 * 60.00616 * 23 21 19 39 39 H 1.09004 * 109.46469 * 180.02562 * 23 21 19 40 40 H 1.08999 * 109.47157 * 299.99702 * 23 21 19 41 41 H 1.07997 * 122.53727 * 0.02562 * 25 24 21 42 42 H 1.08001 * 122.53888 * 179.97438 * 26 25 24 43 43 H 1.07999 * 125.20622 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3538 2.0183 0.4992 5 6 2.3206 1.7650 -1.4402 6 7 3.6104 2.4699 -1.4051 7 6 4.2508 3.0164 -2.4850 8 1 5.1992 3.5164 -2.3543 9 6 3.6812 2.9278 -3.7478 10 7 2.5253 2.3189 -3.9070 11 14 4.5552 3.6728 -5.2210 12 1 5.8860 3.0340 -5.3822 13 1 3.7448 3.4451 -6.4445 14 1 4.7292 5.1321 -5.0075 15 6 4.0995 2.4916 -0.0146 16 6 3.4088 1.2837 0.6714 17 1 3.9350 0.3558 0.4479 18 7 3.3001 1.4882 2.1180 19 6 4.2624 1.0223 2.9385 20 8 5.2186 0.4343 2.4794 21 6 4.1509 1.2331 4.4266 22 1 4.1165 2.3013 4.6407 23 6 2.8725 0.5684 4.9413 24 6 5.3462 0.6221 5.1115 25 6 6.2249 1.2870 5.8631 26 6 7.2438 0.5132 6.3914 27 6 7.1929 -0.7799 6.0684 28 16 5.7921 -1.0781 5.0474 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.3891 0.8992 -2.0988 33 1 1.5378 2.4370 -1.7917 34 1 2.1270 2.2573 -4.7893 35 1 5.1828 2.3735 0.0084 36 1 3.8094 3.4212 0.4752 37 1 2.5355 1.9588 2.4852 38 1 2.9069 -0.4998 4.7272 39 1 2.7917 0.7212 6.0176 40 1 2.0082 1.0108 4.4460 41 1 6.1468 2.3484 6.0463 42 1 8.0217 0.9255 7.0170 43 1 7.9008 -1.5300 6.3885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082125021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:23 Heat of formation + Delta-G solvation = -14.656515 kcal Electronic energy + Delta-G solvation = -25467.374243 eV Core-core repulsion = 21833.545304 eV Total energy + Delta-G solvation = -3633.828939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.99410 -38.39090 -37.59656 -35.90004 -34.24157 -33.79668 -31.67091 -28.95723 -28.53926 -27.12862 -26.13308 -25.04214 -24.23505 -23.05476 -20.66814 -20.52539 -19.92694 -19.43213 -17.73533 -16.90214 -16.72941 -16.23168 -15.70883 -15.47689 -14.93289 -14.73724 -14.46026 -14.22369 -13.86217 -13.70193 -13.23920 -13.19802 -12.83326 -12.69333 -12.46061 -12.34844 -12.16855 -11.90046 -11.82946 -11.67849 -11.49886 -11.24482 -11.01430 -10.79605 -10.74807 -10.65734 -10.18172 -9.99803 -9.79997 -9.69658 -9.14020 -8.77926 -8.69703 -8.57275 -8.36314 -6.89340 -5.73503 -3.08569 0.95482 1.64597 2.04099 2.66084 2.77195 3.31838 3.41699 3.45507 3.46971 4.13273 4.35908 4.50412 4.69059 4.83198 4.99128 5.05271 5.16519 5.36704 5.39144 5.43957 5.48056 5.50442 5.55468 5.56706 5.64201 5.70276 5.83188 5.85946 5.92016 6.02432 6.05135 6.15641 6.22354 6.41342 6.51737 6.62297 6.85263 7.24747 7.47258 7.65705 7.70841 7.85833 8.19923 8.38198 9.17266 9.77375 10.40489 11.37825 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.003152 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.274434 B = 8879.844776 C = 9958.646078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.062 0.938 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.080 0.920 9 C -0.006 4.006 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.133 3.867 17 H 0.107 0.893 18 N -0.713 5.713 19 C 0.513 3.487 20 O -0.522 6.522 21 C -0.042 4.042 22 H 0.113 0.887 23 C -0.143 4.143 24 C -0.155 4.155 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.227 4.227 28 S 0.142 5.858 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.254 0.746 35 H 0.049 0.951 36 H 0.022 0.978 37 H 0.396 0.604 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 -3.513 21.827 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.039 3.961 6 N -0.327 5.327 7 C -0.358 4.358 8 H 0.098 0.902 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.028 3.972 17 H 0.125 0.875 18 N -0.364 5.364 19 C 0.298 3.702 20 O -0.398 6.398 21 C -0.065 4.065 22 H 0.131 0.869 23 C -0.200 4.200 24 C -0.273 4.273 25 C -0.172 4.172 26 C -0.168 4.168 27 C -0.363 4.363 28 S 0.407 5.593 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.229 0.771 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.119 -5.415 20.542 21.273 hybrid contribution 0.480 2.180 0.003 2.232 sum -0.639 -3.235 20.545 20.808 Atomic orbital electron populations 1.22703 0.81755 1.02025 0.99755 1.87913 1.19072 1.27573 1.95056 1.23847 0.92803 0.84051 0.99621 0.92042 1.21567 0.88410 0.97084 0.89041 1.44234 1.20797 1.66091 1.01624 1.19034 1.02499 1.29259 0.84996 0.90203 1.24817 0.97289 1.00663 0.97508 1.69925 1.17679 1.47316 1.22076 0.86154 0.78636 0.78763 0.81944 1.21025 1.21567 1.21133 1.21849 0.97604 0.93712 0.86475 1.22412 0.96262 1.01152 0.77378 0.87519 1.45882 1.24576 1.58646 1.07276 1.20340 0.82784 0.79003 0.88102 1.90760 1.31150 1.40675 1.77166 1.19841 0.93096 1.01898 0.91691 0.86909 1.21845 0.94808 1.01350 1.02044 1.23916 1.01469 0.97365 1.04541 1.20038 0.95296 1.01033 1.00798 1.20049 1.00391 0.93122 1.03240 1.25695 1.03993 1.00675 1.05942 1.84354 1.21271 1.06524 1.47122 0.93601 0.94882 0.90270 0.91992 0.93388 0.93605 0.93232 0.96020 0.77060 0.91743 0.91002 0.91241 0.84555 0.84626 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.86 101.05 1.10 1.58 16 2 O -0.38 -6.91 10.43 -35.23 -0.37 -7.28 16 3 C 0.06 1.04 3.06 -24.89 -0.08 0.97 16 4 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 5 C 0.16 3.99 5.15 -3.06 -0.02 3.97 16 6 N -0.60 -15.48 3.40 -169.93 -0.58 -16.06 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 10 N -0.92 -27.02 10.31 55.49 0.57 -26.44 16 11 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 C 0.13 2.81 6.94 -2.41 -0.02 2.79 16 16 C 0.13 2.49 3.16 -65.66 -0.21 2.28 16 17 H 0.11 2.31 7.54 -51.93 -0.39 1.92 16 18 N -0.71 -10.18 5.10 -51.62 -0.26 -10.44 16 19 C 0.51 7.61 7.12 -10.99 -0.08 7.53 16 20 O -0.52 -10.00 14.91 5.56 0.08 -9.91 16 21 C -0.04 -0.45 3.10 -92.92 -0.29 -0.74 16 22 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 23 C -0.14 -1.20 9.01 37.16 0.33 -0.86 16 24 C -0.15 -1.85 4.60 -36.00 -0.17 -2.02 16 25 C -0.14 -1.53 10.01 -41.21 -0.41 -1.95 16 26 C -0.14 -1.41 10.18 -41.21 -0.42 -1.83 16 27 C -0.23 -2.40 11.23 29.04 0.33 -2.07 16 28 S 0.14 1.75 22.19 -107.50 -2.39 -0.63 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.72 7.30 -51.93 -0.38 1.34 16 33 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 34 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.40 4.33 7.98 -40.82 -0.33 4.01 16 38 H 0.06 0.62 8.00 -51.93 -0.42 0.20 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 41 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -33.69 368.21 -9.05 -42.74 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.46 Total: 2.53 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.17 Total: 2.74 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.27 Total: -52.94 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.28 Total: -17.19 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.39 Total: -0.63 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.69 -9.05 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082125021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.084 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds